FC925221

Overview
NameFC925221
Unique NameFC925221
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925221 vs. ExPASy Swiss-Prot
Match: YECC_ECOLI (Uncharacterized amino-acid ABC transporter ATP-binding protein yecC OS=Escherichia coli (strain K12) GN=yecC PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 59/218 (27.06%), Postives = 97/218 (44.50%), Query Frame = 1
Query:   88 LLHSVSGAFRPGILTALMGVSGAGKTTLM---DVLAGRKTGGYIEGDIKISGYPKNQETFARVS------GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 714
            +LH +    +PG + A++G SG+GKTTL+   ++L   + G    GDI I       +  + +       G+  QN    P+ TV E+++    +     V  + ++       EL+    L       P    LS  Q++R+ IA  L   P +I  DEPTS LD      V+ T+R      RT+V   H+ S    +  D  + + + GR++  G
Sbjct:   18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRSINLLEQPEAGTITVGDITIDTARSLSQQKSLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVI-----VKGEPKEEATARARELLAKVGLAGKETSYP--RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSF-ARDVADRAIFMDQ-GRIVEQG 226          
BLAST of FC925221 vs. ExPASy Swiss-Prot
Match: Y5847_STRAW (Putative ABC transporter ATP-binding protein SAV_5847 OS=Streptomyces avermitilis GN=SAV_5847 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 62/207 (29.95%), Postives = 100/207 (48.31%), Query Frame = 1
Query:  121 GILTALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIKISGYPKNQET---FARVSGYCEQNDI-HSPYVTVYESLLYSAW-LRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 714
            G L  L+G SG GK+T++  ++G     TGG + G + ++G           A V G   Q+ + H    TV + L Y    L ++ DV  ++    V+E ++L+ L  L D  +     S LS  Q++R+ I   L  +P ++ +DEPTS LD  AA  V+  ++  V D G TV+   H+    + +  D + LL   G  +  G
Sbjct:   29 GELVLLVGPSGVGKSTVLGAVSGLVPHFTGGTLRGRVTVAGRDTRTHKPRELADVVGTVGQDPLSHFVTDTVEDELAYGMESLGIAPDVMRRR----VEETLDLLGLAELRDRPI-----STLSGGQQQRVAIGSVLTPHPKVLVLDEPTSALDPAAAEEVLAVLQRLVHDLGTTVLMAEHRLE-RVVQYADRVALLPAPGAPLTLG 225          
BLAST of FC925221 vs. ExPASy Swiss-Prot
Match: RBSA_STRA5 (Ribose import ATP-binding protein rbsA OS=Streptococcus agalactiae serotype V GN=rbsA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 60/210 (28.57%), Postives = 101/210 (48.10%), Query Frame = 1
Query:   85 QLLHSVSGAFRPGILTALMGVSGAGKTTLMDVLAG---RKTGG-YIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLP---GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 693
            ++L  +    + G + ALMG +GAGK+TLM++L G     TG  YI+G+ +    P+  E F     + E N    P +TV E+L     ++ +  +  +K       +M    L++     V +P    +  LS  Q++ + IA  L+   SI+ MDEPT+ L  R    + R +R     G  VV   H+   +IF+  D + +++ G
Sbjct:   16 KVLEKIDLELQSGQIHALMGENGAGKSTLMNILTGLFPASTGTIYIDGEERTFSNPQEAEEFGISFIHQEMNTW--PEMTVLENLFLGREIKTTFGLLNQK-------LMRQKALETFKRLGVTIPLDIPIGNLSVGQQQMIEIAKSLLNQLSILVMDEPTAALTDRETENLFRVIRGLKQEGVGVVYISHRME-EIFKITDFVTVMRDG 215          
BLAST of FC925221 vs. ExPASy Swiss-Prot
Match: RBSA_STRA3 (Ribose import ATP-binding protein rbsA OS=Streptococcus agalactiae serotype III GN=rbsA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 59/210 (28.10%), Postives = 102/210 (48.57%), Query Frame = 1
Query:   85 QLLHSVSGAFRPGILTALMGVSGAGKTTLMDVLAG---RKTGG-YIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLP---GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 693
            ++L  +    + G + ALMG +GAGK+TLM++L G     TG  YI+G+ +    P+  E F     + E N    P +TV E+L     ++ +  +  +K       +M    L++     V +P    +  LS  Q++ + IA  L+   SI+ MDEPT+ L  R    + R +R+    G  +V   H+   +IF+  D + +++ G
Sbjct:   16 KVLEKIDLELQSGQIHALMGENGAGKSTLMNILTGLFPASTGTIYIDGEERTFSNPQEAEEFGISFIHQEMNTW--PEMTVLENLFLGREIKTTFGLLNQK-------LMRQKALEAFKRLGVTIPLDIPIGNLSVGQQQMIEIAKSLLNQLSILVMDEPTAALTDRETENLFRVIRSLKQEGVGIVYISHRME-EIFKITDFVTVMRDG 215          
BLAST of FC925221 vs. ExPASy Swiss-Prot
Match: RBSA_BACSK (Ribose import ATP-binding protein rbsA OS=Bacillus clausii (strain KSM-K16) GN=rbsA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 63/220 (28.64%), Postives = 100/220 (45.45%), Query Frame = 1
Query:   85 QLLHSVSGAFRPGILTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG------YPKNQETFARVSGYCEQNDIHSPYVTVYESLLY--------SAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRV 702
            Q+L +VS     G + ALMG +GAGK+TLM +L G       EG +++ G      +PK+ E       + E N +  P ++V E+L          + WL+      TKK   + ++ +  + LK       G      LS  +++ + IA  L+ N  II MDEPT+ L  R    +   +R   + G T V   H+   +IF     + +L+ G  V
Sbjct:   16 QVLKNVSFTLEKGEIHALMGENGAGKSTLMKILTGIYPRD--EGVVRVKGKEVAYTHPKDAEKDGIAVIHQELNIL--PELSVAENLFLGNEYTVGKTGWLK------TKKMNEYAEQQLAELGLKVKASDRAG-----ALSVGKQQLIEIAKALMTNADIIIMDEPTAALTDREIDTLFTVIRGLQEKGVTFVYISHRME-EIFSLCQRITVLRDGNYV 219          
BLAST of FC925221 vs. ExPASy Swiss-Prot
Match: PHNC_PSEST (Phosphonates import ATP-binding protein phnC OS=Pseudomonas stutzeri GN=phnC PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 68/230 (29.57%), Postives = 107/230 (46.52%), Query Frame = 1
Query:   85 QLLHSVSGAFRPGILTALMGVSGAGKTTLMDVLAG-----RKTGGYIE---GDIKISGYPKNQETFARVS-GYCEQNDIHSPYVTVYESLL---------YSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 717
            Q L  +  A +PG + AL+G SG+GK+TL+  LAG     R  GG IE    +++ +G    +    R   GY  Q       ++V +++L         +   L + SD + K++ M   E + L E  +           S LS  Q++R+ IA  L     +I  DEP + LD  +A  VM  + +     G+TVV T+HQ  +D    +    +  +GGR+ Y GP
Sbjct:   18 QALFDLGLAIQPGEMVALIGASGSGKSTLLRHLAGLACCDRSAGGRIEVLGREVQATGRLHGEVRRLRADIGYIFQQFNLVTRLSVLDNVLLGFLGRMPRWRGSLGMFSD-EQKRQAMAALERVGLAERAAQR--------ASTLSGGQQQRVAIARALTQQAEVILADEPIASLDPESARKVMEILADINRQDGKTVVVTLHQ--VDYALRYCSRAVALKGGRIHYDGP 236          
BLAST of FC925221 vs. ExPASy Swiss-Prot
Match: MDR3_CAEEL (Multidrug resistance protein 3 OS=Caenorhabditis elegans GN=pgp-3 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 67/236 (28.39%), Postives = 103/236 (43.64%), Query Frame = 1
Query:    7 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGILTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP---KNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS----IDIFEAFDELLLLKRG 693
            LTFD + +      E+K          +L  VS    PG   AL+G SG GK+T + +L   +      G IK+ G P    N        G  +Q  I     TV E++     L    D++   +     E   + +L    D+++G  G   LS  Q++R+ IA  +V  P I+ +DE TS LD  +  +V +T  +    GRT +C  H+ S          FD+ L+ +RG
Sbjct:  376 LTFDGIEFTYPTRPELK----------ILKGVSFEVNPGETVALVGHSGCGKSTSIGLL--MRFYNQCAGMIKLDGIPIQEYNIRWLRSTIGIVQQEPIIF-VATVAENIRMGDVLITDQDIEEACKMANAHEF--ICKLSDRYDTVIG-AGAVQLSGGQKQRVAIARAIVRKPQILLLDEATSALDTESERMV-QTALDKASEGRTTLCIAHRLSTIRNASKILVFDQGLIAERG 594          
BLAST of FC925221 vs. ExPASy Swiss-Prot
Match: CYSA_METCA (Sulfate/thiosulfate import ATP-binding protein cysA OS=Methylococcus capsulatus GN=cysA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 56/208 (26.92%), Postives = 96/208 (46.15%), Query Frame = 1
Query:   85 QLLHSVSGAFRPGILTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK-NQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSS----DVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 693
            Q L  +      G L AL+G SG GKTTL+ ++AG +      G I + G    ++    R  G+  Q+     +++V+E++ +   +R       + + ++R   V E++ELV+L  L D   G      LS  QR+R+ +A  L   P ++ +DEP   LDA+    + R +R   D        +     +  E  D +++L  G
Sbjct:   16 QALKGIDLTIGSGELVALLGPSGCGKTTLLRIIAGLEAAD--SGQILLHGEDTTHRHVRERRVGFVFQHYALFRHMSVFENIAFGLRVRPRGQRPPEAEIRRR---VQELLELVQLDWLADRHPGQ-----LSGGQRQRIALARALAVEPKVLLLDEPFGALDAKVRKDLRRWLRRLHDGLHITSVFVTHDQEEALEVADRVVVLNAG 213          
BLAST of FC925221 vs. ExPASy Swiss-Prot
Match: CYSA_BORPE (Sulfate/thiosulfate import ATP-binding protein cysA OS=Bordetella pertussis GN=cysA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 55/203 (27.09%), Postives = 96/203 (47.29%), Query Frame = 1
Query:   91 LHSVSGAFRPGILTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKR-KMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 693
            L  VS     G L AL+G SG GKTTL+ ++AG ++     G +  +G    + +   R  G+  Q+     ++TV+E++ +   +R  S   ++ R +  V +++ LV+L  L D        + LS  QR+R+ +A  L   P ++ +DEP   LDA+    + R +R   D        +     +  E  D ++L+  G
Sbjct:   18 LDEVSLHIETGELVALLGPSGCGKTTLLRIIAGLESAD--AGSVLFAGEDATEVDVRQRQVGFVFQHYALFKHMTVFENVAFGLRVRHRSQRPSEARIRAKVLDLLGLVQLDWLADRYP-----AQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRLHDELHVASVFVTHDQEEALEVTDRVVLMNAG 213          
BLAST of FC925221 vs. ExPASy Swiss-Prot
Match: CYSA_BORPA (Sulfate/thiosulfate import ATP-binding protein cysA OS=Bordetella parapertussis GN=cysA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 55/203 (27.09%), Postives = 96/203 (47.29%), Query Frame = 1
Query:   91 LHSVSGAFRPGILTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKR-KMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 693
            L  VS     G L AL+G SG GKTTL+ ++AG ++     G +  +G    + +   R  G+  Q+     ++TV+E++ +   +R  S   ++ R +  V +++ LV+L  L D        + LS  QR+R+ +A  L   P ++ +DEP   LDA+    + R +R   D        +     +  E  D ++L+  G
Sbjct:   18 LDEVSLHIETGELVALLGPSGCGKTTLLRIIAGLESAD--AGSVLFAGEDATEVDVRQRQVGFVFQHYALFKHMTVFENVAFGLRVRHRSQRPSEARIRAKVLDLLGLVQLDWLADRYP-----AQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRLHDELHVASVFVTHDQEEALEVADRVVLMNAG 213          
The following BLAST results are available for this feature:
BLAST of FC925221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 300
Match NameE-valueIdentityDescription
YECC_ECOLI9.112e-1127.06Uncharacterized amino-acid ABC transporter ATP-bin... [more]
Y5847_STRAW9.112e-1129.95Putative ABC transporter ATP-binding protein SAV_5... [more]
RBSA_STRA59.112e-1128.57Ribose import ATP-binding protein rbsA OS=Streptoc... [more]
RBSA_STRA39.112e-1128.10Ribose import ATP-binding protein rbsA OS=Streptoc... [more]
RBSA_BACSK9.112e-1128.64Ribose import ATP-binding protein rbsA OS=Bacillus... [more]
PHNC_PSEST9.112e-1129.57Phosphonates import ATP-binding protein phnC OS=Ps... [more]
MDR3_CAEEL9.112e-1128.39Multidrug resistance protein 3 OS=Caenorhabditis e... [more]
CYSA_METCA9.112e-1126.92Sulfate/thiosulfate import ATP-binding protein cys... [more]
CYSA_BORPE9.112e-1127.09Sulfate/thiosulfate import ATP-binding protein cys... [more]
CYSA_BORPA9.112e-1127.09Sulfate/thiosulfate import ATP-binding protein cys... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YF19FM1 TF Citrus clementina cDNA clone KN0AAP8YF19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925221 ID=FC925221; Name=FC925221; organism=Citrus clementina; type=EST; length=733bp
CTTTCACTTACATTCGACAATATGAGCTACTTCGTGGATATGCCTGCAGA
AATGAAGACTGAAGGAGTTGGAGAAGATCGTCTTCAACTGCTACACAGTG
TCAGCGGTGCATTCAGGCCAGGAATATTGACAGCATTAATGGGTGTAAGT
GGTGCGGGGAAGACAACTCTGATGGATGTATTGGCAGGAAGGAAGACCGG
AGGATATATTGAAGGGGACATTAAAATTTCTGGTTACCCCAAAAACCAAG
AAACATTTGCTCGAGTGAGTGGTTATTGTGAACAGAATGACATTCATTCA
CCCTATGTTACTGTCTATGAATCTCTCCTCTACTCAGCATGGCTTCGTCT
TTCTTCAGACGTTGATACGAAAAAAAGAAAGATGTTTGTTGATGAAGTTA
TGGAGCTTGTTGAGCTCAAATCATTGAATGATTCTATGGTTGGCCTTCCC
GGAGTAAGTGGTCTTTCGACAGAGCAAAGGAAGAGATTGACGATTGCTGT
AGAATTGGTTGCTAACCCTTCTATCATCTTCATGGATGAGCCTACATCTG
GGCTTGATGCTAGAGCTGCTGCTATTGTCATGCGTACTGTTAGAAATACA
GTGGATACAGGGAGAACAGTTGTGTGTACAATCCACCAGCCAAGCATAGA
CATTTTTGAAGCATTTGACGAGCTATTGTTGTTGAAAAGAGGGGGCCGCG
TCATTTATGCTGGACCTCTTGGTCACGAATCTC
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