FC925221

Overview
NameFC925221
Unique NameFC925221
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925221 vs. ExPASy Swiss-Prot
Match: WHT3_CAEEL (ABC transporter ATP-binding protein/permease wht-3 OS=Caenorhabditis elegans GN=wht-3 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.762e-38
Identity = 92/218 (42.20%), Postives = 142/218 (65.14%), Query Frame = 1
Query:   85 QLLHSVSGAFRPGILTALMGVSGAGKTTLMDVLAGRKTGGYIE-GDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPG-VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHES 732
            QLL+ VSG  +PG + ALMG SGAGKTTLM+VL  R   G  + G +K++G    +E  + +SG+ +Q +I  P +TV E L+  A LR+ ++  T++ +  VDE++E++ L++  D  +G PG V G+S  + +RLT A EL++NPS++F DEPTSGLD+  AA V++ ++N  ++GRT+   IHQP+ ++F  FD+++ L  G       P  HES
Sbjct:   55 QLLNRVSGIAKPGEMVALMGASGAGKTTLMNVLMCRNMKGLEKNGTVKVNGTKIGKE-ISLISGFAQQQEIFIPTLTVDEYLMIQARLRMKANKHTRRER--VDEIIEMLRLQNCRDLKIGTPGLVKGISGGEARRLTFACELLSNPSLLFADEPTSGLDSFMAASVVQILKNLANSGRTL---IHQPTAELFFQFDKIIFLSMGKTAFMGTP--HES 264          
BLAST of FC925221 vs. ExPASy Swiss-Prot
Match: AB28G_ARATH (ABC transporter G family member 28 OS=Arabidopsis thaliana GN=ABCG28 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.762e-38
Identity = 78/211 (36.97%), Postives = 134/211 (63.51%), Query Frame = 1
Query:   88 LLHSVSGAFRPGILTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 720
            L+  V+G   PG ++A+MG SGAGKTT +  L G+  G  + G I ++G  ++ +++ ++ G+  Q+DI    +TV E+L +SA  RL +D+   ++ + V+ V+E + L+ + DS+VG     G+S  QRKR+ + +E+V  PS++ +DEPTSGLD+ ++ +++R +R     G  +   +HQPS  +F  FD+L+LL +GG + Y GP+
Sbjct:  515 LMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPGCIMTGMILVNGKVESIQSYKKIIGFVPQDDIVHGNLTVEENLWFSARCRLPADLPKPEKVLVVERVIESLGLQHVRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVVHQPSYTLFRMFDDLILLAKGGLICYQGPV 725          
BLAST of FC925221 vs. ExPASy Swiss-Prot
Match: ABCG1_MOUSE (ATP-binding cassette sub-family G member 1 OS=Mus musculus GN=Abcg1 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.005e-38
Identity = 98/243 (40.33%), Postives = 151/243 (62.14%), Query Frame = 1
Query:    1 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGILTALMGVSGAGKTTLMDVLAG-RKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH 726
            +++ F ++SY V      K +G       LL  +SG F  G L A+MG SGAGK+TLM++LAG R+TG  ++G + I+G P++   F +VS Y  Q+D+  P++TV E+++ SA L+L  + D  +R+M V E++  + L    ++  G      LS  QRKRL IA+ELV NP ++F DEPTSGLD+ +   V+  ++     GR++VCTIHQPS  +FE FD+L +L + G+ +Y G + +
Sbjct:   75 VNIEFKDLSYSVPEGPWWKKKGYKT----LLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETG--MKGAVLINGMPRDLRCFRKVSCYIMQDDMLLPHLTVQEAMMVSAHLKLQ-EKDEGRREM-VKEILTALGLLPCANTRTG-----SLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQGGRSIVCTIHQPSAKLFELFDQLYVLSQ-GQCVYRGKVSN 303          
BLAST of FC925221 vs. ExPASy Swiss-Prot
Match: ABCG1_HUMAN (ATP-binding cassette sub-family G member 1 OS=Homo sapiens GN=ABCG1 PE=2 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 3.925e-38
Identity = 97/239 (40.59%), Postives = 150/239 (62.76%), Query Frame = 1
Query:    1 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGILTALMGVSGAGKTTLMDVLAG-RKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 714
            +++ F ++SY V      + +G       LL  +SG F  G L A+MG SGAGK+TLM++LAG R+TG  ++G + I+G P++   F +VS Y  Q+D+  P++TV E+++ SA L+L  + D  +R+M V E++  + L S  ++  G      LS  QRKRL IA+ELV NP ++F DEPTSGLD+ +   V+  ++     GR+++CTIHQPS  +FE FD+L +L + G+ +Y G
Sbjct:   75 VNIEFRDLSYSVPEGPWWRKKGYKT----LLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETG--MKGAVLINGLPRDLRCFRKVSCYIMQDDMLLPHLTVQEAMMVSAHLKLQ-EKDEGRREM-VKEILTALGLLSCANTRTG-----SLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQGGRSIICTIHQPSAKLFELFDQLYVLSQ-GQCVYRG 299          
BLAST of FC925221 vs. ExPASy Swiss-Prot
Match: ABCG1_DICDI (ABC transporter G family member 1 OS=Dictyostelium discoideum GN=abcG1 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.744e-38
Identity = 85/239 (35.56%), Postives = 146/239 (61.09%), Query Frame = 1
Query:    1 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGILTALMGVSGAGKTTLMDVLAGR-KTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPG--VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 708
            +  +F +++++V +  + K + + +   Q+L +++G    G + A+MG SGAGKTTL+D+LA R    G   G + ++G   +   F ++ GY  Q+D   P +TV E+L + A L++  DV  K++   V ++++ + L    D++VG     + G+S  +R+R+TI++EL+  PS+I +DEPTSGLDA  +  VM  ++    +GRT++CTIHQP  +I++ FD LLLL  G  + Y
Sbjct:  112 IDFSFKDINHYVQITEKGKKKKISK---QILTNINGHIESGTIFAIMGPSGAGKTTLLDILAHRLNING--SGTMYLNGNKSDFNIFKKLCGYVTQSDSLMPSLTVRETLNFYAQLKMPRDVPLKEKLQRVQDIIDEMGLNRCADTLVGTADNKIRGISGGERRRVTISIELLTGPSVILLDEPTSGLDASTSFYVMSALKKLAKSGRTIICTIHQPRSNIYDMFDNLLLLGDGNTIYY 345          
BLAST of FC925221 vs. ExPASy Swiss-Prot
Match: ABCGM_DICDI (ABC transporter G family member 22 OS=Dictyostelium discoideum GN=abcG22 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.948e-37
Identity = 95/250 (38.00%), Postives = 150/250 (60.00%), Query Frame = 1
Query:    1 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGILTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVG--LPG---VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG--PLGH 726
            L++TF +++Y V          V + ++Q+L  VSG   PG L A+ G SG+GKTTL+D+LA RK  G I G + I+G  +  + + R+  Y  Q D+  P +TV E+L + A L+L      K++   +++++E + L    D+ +G  LPG   + GLS  +++R++I   LV +PSI+ +DEPTSGLD  +A  VM+T V  T     TV+CTIHQP  +IF+ F ++++L   GR++Y G  P+ H
Sbjct:   29 LTITFKDLAYSVT---------VKKKKMQILKGVSGTVTPGELVAVFGPSGSGKTTLLDILANRKESGEISGAVLING-NEIDDDYKRLCSYVVQEDVLLPTITVRETLRFYADLKLPKSWTEKEKHERIEQILEQIGLSHRADAKIGGVLPGGIVLRGLSGGEKRRVSIGCGLVTSPSIVLLDEPTSGLDTTSAMAVMKTLVELTQQKSVTVICTIHQPRSEIFKLFTKIMVLAE-GRLVYYGNRPVEH 267          
BLAST of FC925221 vs. ExPASy Swiss-Prot
Match: AB7G_ARATH (ABC transporter G family member 7 OS=Arabidopsis thaliana GN=ABCG7 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.948e-37
Identity = 87/217 (40.09%), Postives = 138/217 (63.59%), Query Frame = 1
Query:   88 LLHSVSGAFRPGILTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHE 729
            LL +VSG  +PG L A+MG SG+GKTTL++VLAG+ +     ++ G ++++G P + + +     +  Q D+    +TV E+L ++A L+L      ++R  +V+ ++  + L S  DS VG   V G+S  ++KRL++A EL+A+PS+IF DEPT+GLDA  A  VM T++     G TV+C+IHQP   ++  FD+++LL   G ++YAGP G E
Sbjct:   90 LLKNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLSLSPRLHLSGLLEVNGKPSSSKAYKLA--FVRQEDLFFSQLTVRETLSFAAELQLPEISSAEERDEYVNNLLLKLGLVSCADSCVGDAKVRGISGGEKKRLSLACELIASPSVIFADEPTTGLDAFQAEKVMETLQKLAQDGHTVICSIHQPRGSVYAKFDDIVLLTE-GTLVYAGPAGKE 303          
BLAST of FC925221 vs. ExPASy Swiss-Prot
Match: WBC30_ARATH (Putative white-brown complex homolog protein 30 OS=Arabidopsis thaliana GN=WBC30 PE=2 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 4.340e-37
Identity = 76/209 (36.36%), Postives = 133/209 (63.64%), Query Frame = 1
Query:   88 LLHSVSGAFRPGILTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 714
            +L SV+G   PG ++A+MG SGAGKTT +  LAG+ TG    G I I+G   +  ++ +++G+  Q+D+    +TV E+L +SA  RLS+ +    + + ++ V+E + L+ + DS+VG     G+S  QRKR+ + VE+V  PS++ +DEPT+GLD+ ++ +++R +R     G  +   +HQPS  +++ FD++++L +GG  +Y G
Sbjct:  481 ILRSVTGKIMPGRVSAVMGPSGAGKTTFLSALAGKATGCTRTGLILINGRNDSINSYKKITGFVPQDDVVHGNLTVEENLRFSARCRLSAYMSKADKVLIIERVIESLGLQHVRDSLVGTIEKRGISGGQRKRVNVGVEMVMEPSLLILDEPTTGLDSASSQLLLRALRREALEGVNICMVVHQPSYTMYKMFDDMIILAKGGLTVYHG 689          
BLAST of FC925221 vs. ExPASy Swiss-Prot
Match: ABCG8_DICDI (ABC transporter G family member 8 OS=Dictyostelium discoideum GN=abcG8 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.263e-36
Identity = 98/263 (37.26%), Postives = 155/263 (58.94%), Query Frame = 1
Query:    1 LSLTFDNMSYFVD--------------------MPAEMKTEGVGEDRLQLLHSVSGAFRPGILTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVG--LPG---VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 714
            + LTF N+SY V+                    +  + KTE   E  + +L++V G    G L ALMG SG+GK+TL+D+LA RK+ G I G + ++G  +  E + +   Y  Q D+     TV+E+L + A L+L    + +K K  V++V+E V L    DS VG  L G   V+GLS  +++R++I   L+ NPS+IF+DEPTSGLD+ AA  +M+T+ N    G TV+C+IHQP  +IF+  ++++++ + G++IY+G
Sbjct:   23 VQLTFKNISYKVENKNYNKNKKEKNKNKIDPEFVNLDNKTENSNEKEITILYNVGGVIEKGELVALMGPSGSGKSTLLDILAQRKSTGKITGQLLVNG-KEIGEAYKKYCSYVTQEDVLLQTYTVFETLKFYADLKLPGVSEIEKIKR-VEKVIEDVGLTLKRDSRVGGVLAGGVAVTGLSGGEKRRVSIGCGLITNPSLIFLDEPTSGLDSVAALQIMKTLLNLTLKGVTVICSIHQPRPEIFQLINKVMVIIK-GKMIYSG 282          
BLAST of FC925221 vs. ExPASy Swiss-Prot
Match: ABCG4_HUMAN (ATP-binding cassette sub-family G member 4 OS=Homo sapiens GN=ABCG4 PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.649e-36
Identity = 86/202 (42.57%), Postives = 128/202 (63.37%), Query Frame = 1
Query:   88 LLHSVSGAFRPGILTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 693
            LL  +SG F    L  +MG SGAGK+T M++LAG +  G ++G I ++G P+   TF ++S Y  Q+D+  P++TV E+++ SA L+LS   + KK    V E++  + L S + +   L     LS  QRKRL IA+ELV NP ++F DEPTSGLD+ +   V+  +++    GRT++CTIHQPS  +FE FD+L +L +G
Sbjct:   84 LLKCLSGKFCRRELIGIMGPSGAGKSTFMNILAGYRESG-MKGQILVNGRPRELRTFRKMSCYIMQDDMLLPHLTVLEAMMVSANLKLSEKQEVKKE--LVTEILTALGLMSCSHTRTAL-----LSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKSLAQGGRTIICTIHQPSAKLFEMFDKLYILSQG 277          
The following BLAST results are available for this feature:
BLAST of FC925221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 300
Match NameE-valueIdentityDescription
WHT3_CAEEL1.762e-3842.20ABC transporter ATP-binding protein/permease wht-3... [more]
AB28G_ARATH1.762e-3836.97ABC transporter G family member 28 OS=Arabidopsis ... [more]
ABCG1_MOUSE3.005e-3840.33ATP-binding cassette sub-family G member 1 OS=Mus ... [more]
ABCG1_HUMAN3.925e-3840.59ATP-binding cassette sub-family G member 1 OS=Homo... [more]
ABCG1_DICDI8.744e-3835.56ABC transporter G family member 1 OS=Dictyostelium... [more]
ABCGM_DICDI1.948e-3738.00ABC transporter G family member 22 OS=Dictyosteliu... [more]
AB7G_ARATH1.948e-3740.09ABC transporter G family member 7 OS=Arabidopsis t... [more]
WBC30_ARATH4.340e-3736.36Putative white-brown complex homolog protein 30 OS... [more]
ABCG8_DICDI1.263e-3637.26ABC transporter G family member 8 OS=Dictyostelium... [more]
ABCG4_HUMAN1.649e-3642.57ATP-binding cassette sub-family G member 4 OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YF19FM1 TF Citrus clementina cDNA clone KN0AAP8YF19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925221 ID=FC925221; Name=FC925221; organism=Citrus clementina; type=EST; length=733bp
CTTTCACTTACATTCGACAATATGAGCTACTTCGTGGATATGCCTGCAGA
AATGAAGACTGAAGGAGTTGGAGAAGATCGTCTTCAACTGCTACACAGTG
TCAGCGGTGCATTCAGGCCAGGAATATTGACAGCATTAATGGGTGTAAGT
GGTGCGGGGAAGACAACTCTGATGGATGTATTGGCAGGAAGGAAGACCGG
AGGATATATTGAAGGGGACATTAAAATTTCTGGTTACCCCAAAAACCAAG
AAACATTTGCTCGAGTGAGTGGTTATTGTGAACAGAATGACATTCATTCA
CCCTATGTTACTGTCTATGAATCTCTCCTCTACTCAGCATGGCTTCGTCT
TTCTTCAGACGTTGATACGAAAAAAAGAAAGATGTTTGTTGATGAAGTTA
TGGAGCTTGTTGAGCTCAAATCATTGAATGATTCTATGGTTGGCCTTCCC
GGAGTAAGTGGTCTTTCGACAGAGCAAAGGAAGAGATTGACGATTGCTGT
AGAATTGGTTGCTAACCCTTCTATCATCTTCATGGATGAGCCTACATCTG
GGCTTGATGCTAGAGCTGCTGCTATTGTCATGCGTACTGTTAGAAATACA
GTGGATACAGGGAGAACAGTTGTGTGTACAATCCACCAGCCAAGCATAGA
CATTTTTGAAGCATTTGACGAGCTATTGTTGTTGAAAAGAGGGGGCCGCG
TCATTTATGCTGGACCTCTTGGTCACGAATCTC
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