FC925225

Overview
NameFC925225
Unique NameFC925225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925225 vs. ExPASy Swiss-Prot
Match: ODO1_PETHY (Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 9.962e-20
Identity = 44/110 (40.00%), Postives = 59/110 (53.64%), Query Frame = 3
Query:  228 DQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 557
            D+  +++GPWT EED  L  +I  +G+  W  V K AG                             LKR GKSCRLRW NYL+PD+KRG L+  E+ L+++LHS+ GNR
Sbjct:    8 DKLGVKKGPWTAEEDKKLISFILTNGQCCWRAVPKLAG-----------------------------LKRCGKSCRLRWTNYLRPDLKRGLLSDAEEKLVIDLHSRLGNR 88          

HSP 2 Score: 35.039 bits (79), Expect = 9.962e-20
Identity = 17/21 (80.95%), Postives = 18/21 (85.71%), Query Frame = 1
Query:  655 IGNFRWSKIAQCLPGRTDNEI 717
            +GN RWSKIA  LPGRTDNEI
Sbjct:   85 LGN-RWSKIAARLPGRTDNEI 104          
BLAST of FC925225 vs. ExPASy Swiss-Prot
Match: MYB15_ANTMA (Myb-related protein 315 OS=Antirrhinum majus GN=MYB315 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.987e-20
Identity = 44/106 (41.51%), Postives = 57/106 (53.77%), Query Frame = 3
Query:  240 LRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 557
            L+RGPWT EED  LT Y+ ++G   W ++ K AG                             L R GKSCRLRW+NYL+PD+K+G LT  E+  I+ELH+  GNR
Sbjct:   12 LKRGPWTEEEDQKLTSYVLKNGIQGWRVIPKLAG-----------------------------LSRCGKSCRLRWMNYLRPDLKKGPLTEMEENQIIELHAHLGNR 88          

HSP 2 Score: 33.8834 bits (76), Expect = 9.987e-20
Identity = 16/21 (76.19%), Postives = 18/21 (85.71%), Query Frame = 1
Query:  655 IGNFRWSKIAQCLPGRTDNEI 717
            +GN RWSKIA  +PGRTDNEI
Sbjct:   85 LGN-RWSKIALHIPGRTDNEI 104          
BLAST of FC925225 vs. ExPASy Swiss-Prot
Match: MYBC_MAIZE (Anthocyanin regulatory C1 protein OS=Zea mays GN=C1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.298e-19
Identity = 43/109 (39.45%), Postives = 59/109 (54.13%), Query Frame = 3
Query:  231 QQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 557
            ++ ++RG WT +ED  L  Y+  HGEG+W  V + AG                             L+R GKSCRLRWLNYL+P+I+RGN++  E+ LI+ LH   GNR
Sbjct:    9 KEGVKRGAWTSKEDDALAAYVKAHGEGKWREVPQKAG-----------------------------LRRCGKSCRLRWLNYLRPNIRRGNISYDEEDLIIRLHRLLGNR 88          

HSP 2 Score: 33.4982 bits (75), Expect = 1.298e-19
Identity = 17/22 (77.27%), Postives = 18/22 (81.82%), Query Frame = 1
Query:  652 LIGNFRWSKIAQCLPGRTDNEI 717
            L+GN RWS IA  LPGRTDNEI
Sbjct:   84 LLGN-RWSLIAGRLPGRTDNEI 104          
BLAST of FC925225 vs. ExPASy Swiss-Prot
Match: MYB39_ARATH (Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.372e-18
Identity = 40/111 (36.04%), Postives = 57/111 (51.35%), Query Frame = 3
Query:  225 EDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 557
            +  + +++GPW  EED  LT YI+++G G W  + K AG                             L R GKSCRLRW+NYL+PDI+RG  +  E+  I+ LH+  GN+
Sbjct:    8 DQDKGVKKGPWLPEEDDKLTAYINENGYGNWRSLPKLAG-----------------------------LNRCGKSCRLRWMNYLRPDIRRGKFSDGEESTIVRLHALLGNK 89          

HSP 2 Score: 35.039 bits (79), Expect = 1.372e-18
Identity = 17/22 (77.27%), Postives = 19/22 (86.36%), Query Frame = 1
Query:  652 LIGNFRWSKIAQCLPGRTDNEI 717
            L+GN +WSKIA  LPGRTDNEI
Sbjct:   85 LLGN-KWSKIAGHLPGRTDNEI 105          
BLAST of FC925225 vs. ExPASy Swiss-Prot
Match: MYB2_PHYPA (Myb-related protein Pp2 OS=Physcomitrella patens GN=PP2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.005e-18
Identity = 44/106 (41.51%), Postives = 53/106 (50.00%), Query Frame = 3
Query:  240 LRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 557
            LRRGPWT EED  L  +I  +G   W  + K AG                             L R GKSCRLRW NYL+PD+KRG  +  E+ LIL+LH+  GNR
Sbjct:   12 LRRGPWTSEEDQKLVSHITNNGLSCWRAIPKLAG-----------------------------LLRCGKSCRLRWTNYLRPDLKRGIFSEAEENLILDLHATLGNR 88          

HSP 2 Score: 33.8834 bits (76), Expect = 3.005e-18
Identity = 16/21 (76.19%), Postives = 18/21 (85.71%), Query Frame = 1
Query:  655 IGNFRWSKIAQCLPGRTDNEI 717
            +GN RWS+IA  LPGRTDNEI
Sbjct:   85 LGN-RWSRIAAQLPGRTDNEI 104          
BLAST of FC925225 vs. ExPASy Swiss-Prot
Match: MYB3_ARATH (Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.400e-18
Identity = 45/110 (40.91%), Postives = 60/110 (54.55%), Query Frame = 3
Query:  228 DQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 557
            ++  + +G WT EED LL  YI +HGEG W  + + AG                             L+R GKSCRLRW+NYL+PD+KRGN T +E  LI++LHS  GN+
Sbjct:    8 EKAHMNKGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAG-----------------------------LQRCGKSCRLRWMNYLRPDLKRGNFTEEEDELIIKLHSLLGNK 88          
BLAST of FC925225 vs. ExPASy Swiss-Prot
Match: MYB86_ARATH (Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.796e-17
Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = 3
Query:  231 QQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 557
            +Q+LR+G W+ EED  L +YI +HG G W+ V K AG                             L+R GKSCRLRW+NYL+PD+KRG  +  E+ LI+ELH+  GNR
Sbjct:    9 KQKLRKGLWSPEEDEKLLNYITRHGHGCWSSVPKLAG-----------------------------LQRCGKSCRLRWINYLRPDLKRGAFSQDEESLIIELHAALGNR 88          
BLAST of FC925225 vs. ExPASy Swiss-Prot
Match: MYB3_HORVU (Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB2 PE=2 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 5.437e-17
Identity = 42/115 (36.52%), Postives = 58/115 (50.43%), Query Frame = 3
Query:  213 NSSEEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 557
            +S    Q ++R+G W+ EED  L ++I +HG G W+ V + A                              L R GKSCRLRW+NYL+PD+KRG  + QE+  I+ LH   GNR
Sbjct:    5 SSGAVGQPKVRKGLWSPEEDEKLYNHIIRHGVGCWSSVPRLAA-----------------------------LNRCGKSCRLRWINYLRPDLKRGCFSQQEEDHIVALHQILGNR 90          

HSP 2 Score: 34.6538 bits (78), Expect = 5.437e-17
Identity = 16/22 (72.73%), Postives = 19/22 (86.36%), Query Frame = 1
Query:  652 LIGNFRWSKIAQCLPGRTDNEI 717
            ++GN RWS+IA  LPGRTDNEI
Sbjct:   86 ILGN-RWSQIASHLPGRTDNEI 106          
BLAST of FC925225 vs. ExPASy Swiss-Prot
Match: MYB06_ANTMA (Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.551e-16
Identity = 40/110 (36.36%), Postives = 54/110 (49.09%), Query Frame = 3
Query:  228 DQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 557
            D+  +++GPWT EED +L  YI +HG G W  +                                +GL R  KSCRLRW NYL+P IKRG+ T  E+ +I+ L +  GNR
Sbjct:    8 DKIGVKKGPWTPEEDIILVSYIQEHGPGNWRAIPSN-----------------------------TGLLRCSKSCRLRWTNYLRPGIKRGDFTEHEEKMIIHLQALLGNR 88          

HSP 2 Score: 29.6462 bits (65), Expect = 1.551e-16
Identity = 14/22 (63.64%), Postives = 17/22 (77.27%), Query Frame = 1
Query:  652 LIGNFRWSKIAQCLPGRTDNEI 717
            L+GN RW+ IA  LP RTDN+I
Sbjct:   84 LLGN-RWAAIASYLPHRTDNDI 104          
BLAST of FC925225 vs. ExPASy Swiss-Prot
Match: MYB38_MAIZE (Myb-related protein Zm38 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.823e-16
Identity = 46/110 (41.82%), Postives = 55/110 (50.00%), Query Frame = 3
Query:  228 DQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 557
            ++    RG WT EED  L  YI  HGEG W  + K AG                             L R GKSCRLRW+NYL+PD+KRGN T  E  LI++LHS  GN+
Sbjct:    8 EKAHTNRGAWTKEEDERLVAYIRAHGEGCWRSLPKAAG-----------------------------LLRCGKSCRLRWINYLRPDLKRGNFTADEDDLIVKLHSLLGNK 88          
The following BLAST results are available for this feature:
BLAST of FC925225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
ODO1_PETHY9.962e-2040.00Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 S... [more]
MYB15_ANTMA9.987e-2041.51Myb-related protein 315 OS=Antirrhinum majus GN=MY... [more]
MYBC_MAIZE1.298e-1939.45Anthocyanin regulatory C1 protein OS=Zea mays GN=C... [more]
MYB39_ARATH1.372e-1836.04Transcription factor MYB39 OS=Arabidopsis thaliana... [more]
MYB2_PHYPA3.005e-1841.51Myb-related protein Pp2 OS=Physcomitrella patens G... [more]
MYB3_ARATH7.400e-1840.91Transcription factor MYB3 OS=Arabidopsis thaliana ... [more]
MYB86_ARATH4.796e-1742.20Transcription factor MYB86 OS=Arabidopsis thaliana... [more]
MYB3_HORVU5.437e-1736.52Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB... [more]
MYB06_ANTMA1.551e-1636.36Myb-related protein 306 OS=Antirrhinum majus GN=MY... [more]
MYB38_MAIZE1.823e-1641.82Myb-related protein Zm38 OS=Zea mays PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YF20FM1 TF Citrus clementina cDNA clone KN0AAP8YF20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925225 ID=FC925225; Name=FC925225; organism=Citrus clementina; type=EST; length=719bp
TTCTTTTTCCGGTTTTCTGTAGTGTTTGTTTGAACTAGGTAGCTATCCTA
AATGATTGTTTATTATTACTAGCTACCGGTTTCACATTCGCTCTCATTTT
GCCCGTTTCTACTCTCTCGCTTGCTTCTAGCCTTGACCAACAAAAACCTC
GTAGGGACACAAAAATGCACACAATGAGAGCAGCAAGGGCTGCTGGTACA
AAGAGAGAGTGCAATTCCAGTGAAGAAGATCAACAAGAGCTGAGAAGAGG
GCCATGGACTCTTGAAGAAGACACACTTCTTACTCATTACATACATCAAC
ACGGCGAAGGTCGTTGGAATATGGTAGCTAAATGTGCAGGTAACTAAATA
CATGCATAAAAGTTTTTTACATCATGATGTCTGTTATATATGTTAGTTAC
TAAATTGGCCTGACTTATAATTTCAGGACTCAAAAGAACTGGAAAGAGTT
GCAGATTGAGATGGCTAAATTATTTGAAACCCGATATTAAACGCGGGAAC
CTAACTCCGCAGGAGCAGTTCTTGATTCTTGAACTCCATTCTAAGTGGGG
TAACAGGTAAATTAATATCCCTATTATACAGTACAACACTAGAGTCGGAA
TTTTTTTTCTTTTCTTTTGATGAAGTTCTAATCGAATTTAATTATGCGAT
GTTAATTGGCAACTTTAGGTGGTCAAAAATTGCACAATGTCTGCCTGGAA
GAACAGACAATGAAATCAA
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