FC925225

Overview
NameFC925225
Unique NameFC925225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925225 vs. ExPASy Swiss-Prot
Match: MYB30_ANTMA (Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.823e-16
Identity = 44/110 (40.00%), Postives = 57/110 (51.82%), Query Frame = 3
Query:  228 DQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 557
            ++    +G WT EED  L +YI  HGEG W  + K AG                             L R GKSCRLRW+NYL+PD+KRGN T +E  +I++LHS  GN+
Sbjct:    8 EKAHTNKGAWTKEEDQRLINYIRAHGEGCWRSLPKAAG-----------------------------LLRCGKSCRLRWINYLRPDLKRGNFTEEEDEIIIKLHSLLGNK 88          
BLAST of FC925225 vs. ExPASy Swiss-Prot
Match: MYB08_ANTMA (Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.823e-16
Identity = 45/110 (40.91%), Postives = 56/110 (50.91%), Query Frame = 3
Query:  228 DQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 557
            ++    +G WT EED  L  YI  HGEG W  + K AG                             L R GKSCRLRW+NYL+PD+KRGN T +E  LI++LHS  GN+
Sbjct:    8 EKAHTNKGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAG-----------------------------LLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNK 88          
BLAST of FC925225 vs. ExPASy Swiss-Prot
Match: MYB4_ARATH (Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.380e-16
Identity = 45/110 (40.91%), Postives = 56/110 (50.91%), Query Frame = 3
Query:  228 DQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 557
            ++    +G WT EED  L  YI  HGEG W  + K AG                             L R GKSCRLRW+NYL+PD+KRGN T +E  LI++LHS  GN+
Sbjct:    8 EKAHTNKGAWTKEEDERLVAYIKAHGEGCWRSLPKAAG-----------------------------LLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNK 88          
BLAST of FC925225 vs. ExPASy Swiss-Prot
Match: MYB1_HORVU (Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.380e-16
Identity = 45/110 (40.91%), Postives = 57/110 (51.82%), Query Frame = 3
Query:  228 DQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 557
            ++    +G WT EED  LT YI  HGEG W  + K AG                             L R GKSCRLRW+NYL+PD+KRGN + +E  LI++LHS  GN+
Sbjct:    8 EKAHTNKGAWTKEEDDRLTAYIKAHGEGCWRSLPKAAG-----------------------------LLRCGKSCRLRWINYLRPDLKRGNFSHEEDELIIKLHSLLGNK 88          
BLAST of FC925225 vs. ExPASy Swiss-Prot
Match: MYB6_ARATH (Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.060e-16
Identity = 44/110 (40.00%), Postives = 55/110 (50.00%), Query Frame = 3
Query:  228 DQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 557
            ++    +G WT EED  L  YI  HGEG W  + K AG                             L R GKSCRLRW+NYL+PD+KRGN T  E  +I++LHS  GN+
Sbjct:    8 EKAHTNKGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAG-----------------------------LLRCGKSCRLRWINYLRPDLKRGNFTDDEDQIIIKLHSLLGNK 88          
BLAST of FC925225 vs. ExPASy Swiss-Prot
Match: MYB32_ARATH (Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.060e-16
Identity = 44/110 (40.00%), Postives = 57/110 (51.82%), Query Frame = 3
Query:  228 DQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 557
            ++    +G WT EED  L  YI  HGEG W  + + AG                             L+R GKSCRLRW+NYL+PD+KRGN T +E  LI++LHS  GN+
Sbjct:    8 EKDHTNKGAWTKEEDDKLISYIKAHGEGCWRSLPRSAG-----------------------------LQRCGKSCRLRWINYLRPDLKRGNFTLEEDDLIIKLHSLLGNK 88          
BLAST of FC925225 vs. ExPASy Swiss-Prot
Match: MYB46_ARATH (Transcription factor MYB46 OS=Arabidopsis thaliana GN=MYB46 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15
Identity = 44/114 (38.60%), Postives = 63/114 (55.26%), Query Frame = 3
Query:  216 SSEEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 557
            +S    +++++G W+ EED+ L  Y+  +G+G W+ VAK AG                             L+R GKSCRLRW+NYL+PD+KRG  +PQE+ LI+  HS  GNR
Sbjct:   10 ASTHQVKKMKKGLWSPEEDSKLMQYMLSNGQGCWSDVAKNAG-----------------------------LQRCGKSCRLRWINYLRPDLKRGAFSPQEEDLIIRFHSILGNR 94          
BLAST of FC925225 vs. ExPASy Swiss-Prot
Match: MYB75_ARATH (Transcription factor MYB75 OS=Arabidopsis thaliana GN=MYB75 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.543e-15
Identity = 46/112 (41.07%), Postives = 58/112 (51.79%), Query Frame = 3
Query:  222 EEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 557
            E   + LR+G WT EED+LL   I+++GEG+W+ V                              + +GL R  KSCRLRWLNYLKP IKRG L+  E  L+L LH   GNR
Sbjct:    2 EGSSKGLRKGAWTTEEDSLLRQCINKYGEGKWHQVP-----------------------------VRAGLNRCRKSCRLRWLNYLKPSIKRGKLSSDEVDLLLRLHRLLGNR 84          
BLAST of FC925225 vs. ExPASy Swiss-Prot
Match: MY113_ARATH (Transcription factor MYB113 OS=Arabidopsis thaliana GN=MYB113 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.863e-15
Identity = 46/111 (41.44%), Postives = 55/111 (49.55%), Query Frame = 3
Query:  225 EDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 557
            E  + LR+G WT EED LL   I ++GEG+W+ V                              + +GL R  KSCRLRWLNYLKP IKRG L   E  L+L LH   GNR
Sbjct:    3 ESPKGLRKGTWTTEEDILLRQCIDKYGEGKWHRVP-----------------------------LRTGLNRCRKSCRLRWLNYLKPSIKRGKLCSDEVDLVLRLHKLLGNR 84          
BLAST of FC925225 vs. ExPASy Swiss-Prot
Match: MYB90_ARATH (Transcription factor MYB90 OS=Arabidopsis thaliana GN=MYB90 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.658e-15
Identity = 46/112 (41.07%), Postives = 57/112 (50.89%), Query Frame = 3
Query:  222 EEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 557
            E   + LR+G WT EED+LL   I ++GEG+W+ V                              + +GL R  KSCRLRWLNYLKP IKRG L+  E  L+L LH   GNR
Sbjct:    2 EGSSKGLRKGAWTAEEDSLLRLCIDKYGEGKWHQVP-----------------------------LRAGLNRCRKSCRLRWLNYLKPSIKRGRLSNDEVDLLLRLHKLLGNR 84          
The following BLAST results are available for this feature:
BLAST of FC925225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
MYB30_ANTMA1.823e-1640.00Myb-related protein 330 OS=Antirrhinum majus GN=MY... [more]
MYB08_ANTMA1.823e-1640.91Myb-related protein 308 OS=Antirrhinum majus GN=MY... [more]
MYB4_ARATH2.380e-1640.91Transcription repressor MYB4 OS=Arabidopsis thalia... [more]
MYB1_HORVU2.380e-1640.91Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1... [more]
MYB6_ARATH4.060e-1640.00Transcription repressor MYB6 OS=Arabidopsis thalia... [more]
MYB32_ARATH4.060e-1640.00Transcription factor MYB32 OS=Arabidopsis thaliana... [more]
MYB46_ARATH1.181e-1538.60Transcription factor MYB46 OS=Arabidopsis thaliana... [more]
MYB75_ARATH1.543e-1541.07Transcription factor MYB75 OS=Arabidopsis thaliana... [more]
MY113_ARATH5.863e-1541.44Transcription factor MYB113 OS=Arabidopsis thalian... [more]
MYB90_ARATH7.658e-1541.07Transcription factor MYB90 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YF20FM1 TF Citrus clementina cDNA clone KN0AAP8YF20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925225 ID=FC925225; Name=FC925225; organism=Citrus clementina; type=EST; length=719bp
TTCTTTTTCCGGTTTTCTGTAGTGTTTGTTTGAACTAGGTAGCTATCCTA
AATGATTGTTTATTATTACTAGCTACCGGTTTCACATTCGCTCTCATTTT
GCCCGTTTCTACTCTCTCGCTTGCTTCTAGCCTTGACCAACAAAAACCTC
GTAGGGACACAAAAATGCACACAATGAGAGCAGCAAGGGCTGCTGGTACA
AAGAGAGAGTGCAATTCCAGTGAAGAAGATCAACAAGAGCTGAGAAGAGG
GCCATGGACTCTTGAAGAAGACACACTTCTTACTCATTACATACATCAAC
ACGGCGAAGGTCGTTGGAATATGGTAGCTAAATGTGCAGGTAACTAAATA
CATGCATAAAAGTTTTTTACATCATGATGTCTGTTATATATGTTAGTTAC
TAAATTGGCCTGACTTATAATTTCAGGACTCAAAAGAACTGGAAAGAGTT
GCAGATTGAGATGGCTAAATTATTTGAAACCCGATATTAAACGCGGGAAC
CTAACTCCGCAGGAGCAGTTCTTGATTCTTGAACTCCATTCTAAGTGGGG
TAACAGGTAAATTAATATCCCTATTATACAGTACAACACTAGAGTCGGAA
TTTTTTTTCTTTTCTTTTGATGAAGTTCTAATCGAATTTAATTATGCGAT
GTTAATTGGCAACTTTAGGTGGTCAAAAATTGCACAATGTCTGCCTGGAA
GAACAGACAATGAAATCAA
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