FC925239

Overview
NameFC925239
Unique NameFC925239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length585
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: AB34G_ARATH (ABC transporter G family member 34 OS=Arabidopsis thaliana GN=ABCG34 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 2.134e-59
Identity = 111/178 (62.36%), Postives = 134/178 (75.28%), Query Frame = 1
Query:   19 GTVQLSNCGESGNDNRERNSSS---SLTE--AEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            G  + +   E G D  + + S    S+ E  + +SH  K+GMVLPF+P SL F+ V Y VDMP +MK QGV  D+L LL  V GAFRPGVLTAL+GVSGAGKTTLMDVLAGRKTGGY+ G I ISGYPK Q TFAR+SGYCEQNDIHSP VT+YESL YSAWLRL  +++++TR+MF+
Sbjct:  802 GNSKATTVVEEGKDKHKGSHSGTGGSVVELTSTSSHGPKKGMVLPFQPLSLAFNNVNYYVDMPAEMKAQGVEGDRLQLLRDVGGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYVEGSINISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLIYSAWLRLSADIDTKTREMFV 979          

HSP 2 Score: 30.8018 bits (68), Expect = 2.134e-59
Identity = 15/22 (68.18%), Postives = 15/22 (68.18%), Query Frame = 2
Query:  518 KPERCLFEEVMELVELKPLRQS 583
            K      EEVMELVELKPLR S
Sbjct:  973 KTREMFVEEVMELVELKPLRNS 994          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: AB39G_ARATH (ABC transporter G family member 39 OS=Arabidopsis thaliana GN=ABCG39 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.783e-59
Identity = 110/169 (65.09%), Postives = 130/169 (76.92%), Query Frame = 1
Query:   46 ESGNDNRE---RNSSSSLTEAEASHPK--KRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            E G D ++   R +  S+ E  +S  K  KRGMVLPF+P SL F+ V Y VDMP +MK QGV  D+L LL  V GAFRPG+LTAL+GVSGAGKTTLMDVLAGRKTGGYI G I ISGYPK Q TFAR+SGYCEQNDIHSP VT+YESL YSAWLRL  +++ +TR++F+
Sbjct:  812 EEGKDKQKGENRGTEGSVVELNSSSNKGPKRGMVLPFQPLSLAFNNVNYYVDMPSEMKAQGVEGDRLQLLRDVGGAFRPGILTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKNQTTFARVSGYCEQNDIHSPHVTVYESLIYSAWLRLSTDIDIKTRELFV 980          

HSP 2 Score: 31.5722 bits (70), Expect = 2.783e-59
Identity = 15/23 (65.22%), Postives = 16/23 (69.57%), Query Frame = 2
Query:  515 LKPERCLFEEVMELVELKPLRQS 583
            +K      EEVMELVELKPLR S
Sbjct:  973 IKTRELFVEEVMELVELKPLRNS 995          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: PDR2_NICPL (Pleiotropic drug resistance protein 2 OS=Nicotiana plumbaginifolia GN=PDR2 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.939e-57
Identity = 103/144 (71.53%), Postives = 121/144 (84.03%), Query Frame = 1
Query:  106 SHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            ++  ++GM+LPF+P SL F+ V Y VDMP +MK QGV E++L LL   SGAFRPG+LTAL+GVSGAGKTTLMDVLAGRKTGGYI G I ISGYPK Q TFAR+SGYCEQNDIHSP+VT+YESL YSAWLRL  +V +ETRKMF+
Sbjct:  843 NNESRKGMILPFQPLSLAFNHVNYYVDMPAEMKTQGVEEERLQLLRDASGAFRPGILTALVGVSGAGKTTLMDVLAGRKTGGYIEGSINISGYPKNQTTFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLASDVKTETRKMFV 986          

HSP 2 Score: 25.0238 bits (53), Expect = 1.939e-57
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = 2
Query:  539 EEVMELVELKPLRQS 583
            EEVMELVELK LR +
Sbjct:  987 EEVMELVELKLLRNA 1001          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: AB29G_ARATH (ABC transporter G family member 29 OS=Arabidopsis thaliana GN=ABCG29 PE=2 SV=2)

HSP 1 Score: 216.083 bits (549), Expect = 1.038e-55
Identity = 112/164 (68.29%), Postives = 127/164 (77.44%), Query Frame = 1
Query:   46 ESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            E+  +NR  N S S      S   KRGMVLPF P +++FD V Y VDMP++MK QGV +DKL LL  V+G FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI GDIRISG+PK+QETFARISGYCEQNDIHSP VT+ ESL YSA+LRLP EV    +  F+
Sbjct:  783 ENTEENRAENGSKS-----KSIDVKRGMVLPFTPLTMSFDNVNYYVDMPKEMKEQGVSKDKLQLLKEVTGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKRQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLPKEVTKYEKMRFV 941          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: AB36G_ARATH (ABC transporter G family member 36 OS=Arabidopsis thaliana GN=ABCG36 PE=1 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 2.312e-55
Identity = 107/156 (68.59%), Postives = 124/156 (79.49%), Query Frame = 1
Query:   70 RNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            R S  S  EA      K+GMVLPF P +++FD+V Y VDMP +M+ QGV E +L LL GV+GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI GD+RISG+PK QETFARISGYCEQ DIHSP VT+ ESL +SA+LRLP EV  + + MF+
Sbjct:  839 RMSRDSAAEASGGAGNKKGMVLPFTPLAMSFDDVKYFVDMPGEMRDQGVTETRLQLLKGVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDVRISGFPKVQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLPKEVGKDEKMMFV 994          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: PDR15_ORYSJ (Pleiotropic drug resistance protein 15 OS=Oryza sativa subsp. japonica GN=PDR15 PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 5.151e-55
Identity = 108/159 (67.92%), Postives = 127/159 (79.87%), Query Frame = 1
Query:   61 NRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            N    S S +  A  + P  RGMVLPFEP  ++F+E+ Y VDMP +MK QGV  DKL LL+G+SGAFRPGVLTALMGVSGAGKTTLMDVL+GRKTGGYI G+I ISGYPK Q TFARISGYCEQNDIHSP +T+ ESL +SA+LRLP EVN + +K+F+
Sbjct:  878 NTSDRSHSYINAAGRTAPG-RGMVLPFEPLYMSFNEINYYVDMPLEMKSQGVTADKLQLLSGISGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYIEGEIYISGYPKNQATFARISGYCEQNDIHSPQITVRESLLFSAFLRLPKEVNDQEKKIFV 1035          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: PDR5_ORYSJ (Pleiotropic drug resistance protein 5 OS=Oryza sativa subsp. japonica GN=PDR5 PE=2 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 2.556e-54
Identity = 103/164 (62.80%), Postives = 128/164 (78.05%), Query Frame = 1
Query:   46 ESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            E+ ++  + +   + T    +   +RGMVLPF+P SL+F+ + Y VDMP +MK QG  E +L LL+ +SGAFRPGVLTAL+GVSGAGKTTLMDVLAGRKT G I GDI++SGYPKKQETFARISGYCEQ DIHSP +T+YES+ YSAWLRL  EV+  TRK+F+
Sbjct:  816 EAESNQEQMSEVINGTNGTENRRSQRGMVLPFQPLSLSFNHMNYYVDMPAEMKAQGFTESRLQLLSDISGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTSGTIEGDIKLSGYPKKQETFARISGYCEQTDIHSPNLTVYESIVYSAWLRLSSEVDKNTRKVFV 979          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: AB35G_ARATH (ABC transporter G family member 35 OS=Arabidopsis thaliana GN=ABCG35 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 2.556e-54
Identity = 107/164 (65.24%), Postives = 129/164 (78.66%), Query Frame = 1
Query:   46 ESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            E   + + +  S+  TE E+   KK GMVLPF P +++FD+V Y VDMP +M+ QGV E +L LL GV+ AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI GD+R+SG+PKKQETFARISGYCEQ DIHSP VT+ ESL +SA+LRL  EV+ E + MF+
Sbjct:  805 EEDEEAKGKAGSNKETEMESVSAKK-GMVLPFTPLAMSFDDVKYFVDMPAEMREQGVQETRLQLLKGVTSAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDVRVSGFPKKQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLAKEVSKEDKLMFV 967          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: AB38G_ARATH (ABC transporter G family member 38 OS=Arabidopsis thaliana GN=ABCG38 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 3.339e-54
Identity = 95/135 (70.37%), Postives = 121/135 (89.63%), Query Frame = 1
Query:  133 LPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            +PF+P  +TF+ + YSVD P++MK +G+ E+KLVLLNG+SGAFRPGVLTALMGVSGAGKTTLMDVLAGRK  GYI G+I +SG+PKKQ++FAR+SGYCEQ+DIHSP +T+YESL YSAWLRLPP++++ TR++FI
Sbjct:  814 IPFKPLYMTFENITYSVDTPKEMKEKGIRENKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKNTGYIQGEIYVSGFPKKQDSFARVSGYCEQSDIHSPLLTVYESLLYSAWLRLPPDIDTHTRELFI 948          

HSP 2 Score: 69.3218 bits (168), Expect = 1.569e-11
Identity = 38/98 (38.78%), Postives = 63/98 (64.29%), Query Frame = 1
Query:  202 KLQGVPEDK--LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR-KTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSA 486
            K++ +P+ K  + +LN VSG  +PG LT L+G  G+GK+TL+  L+G+ +TG   TG +  +G+   +    R +GY +Q D+H P +T+ E+L +SA
Sbjct:  148 KIRVLPDRKKRISILNDVSGIIKPGRLTLLLGPPGSGKSTLLKALSGKTETGLRSTGKVTYNGHELHEFVPERTAGYIDQYDVHLPDLTVRETLKFSA 245          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: PDR12_ORYSJ (Pleiotropic drug resistance protein 12 OS=Oryza sativa subsp. japonica GN=PDR12 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.403e-52
Identity = 100/134 (74.63%), Postives = 115/134 (85.82%), Query Frame = 1
Query:  118 KRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSE 519
            +RGMVLPF P S++FD+V Y VDMP +MK QGV +D+L LL  V+G+FRP VLTALMGVSGAGKTTLMDVLAGRKTGGYI GD+RISGYPK QETFARISGYCEQNDIHSP VT+ ESL YSA+LRLP ++  +
Sbjct:  882 RRGMVLPFTPLSMSFDDVNYYVDMPAEMKQQGVVDDRLQLLRDVTGSFRPAVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDMRISGYPKNQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPEKIGDQ 1015          
The following BLAST results are available for this feature:
BLAST of FC925239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
AB34G_ARATH2.134e-5962.36ABC transporter G family member 34 OS=Arabidopsis ... [more]
AB39G_ARATH2.783e-5965.09ABC transporter G family member 39 OS=Arabidopsis ... [more]
PDR2_NICPL1.939e-5771.53Pleiotropic drug resistance protein 2 OS=Nicotiana... [more]
AB29G_ARATH1.038e-5568.29ABC transporter G family member 29 OS=Arabidopsis ... [more]
AB36G_ARATH2.312e-5568.59ABC transporter G family member 36 OS=Arabidopsis ... [more]
PDR15_ORYSJ5.151e-5567.92Pleiotropic drug resistance protein 15 OS=Oryza sa... [more]
PDR5_ORYSJ2.556e-5462.80Pleiotropic drug resistance protein 5 OS=Oryza sat... [more]
AB35G_ARATH2.556e-5465.24ABC transporter G family member 35 OS=Arabidopsis ... [more]
AB38G_ARATH3.339e-5470.37ABC transporter G family member 38 OS=Arabidopsis ... [more]
PDR12_ORYSJ1.403e-5274.63Pleiotropic drug resistance protein 12 OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YE18FM1 TF Citrus clementina cDNA clone KN0AAP3YE18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925239 ID=FC925239; Name=FC925239; organism=Citrus clementina; type=EST; length=585bp
CAAGATAACACATTTGGAGGAACTGTTCAGTTATCAAACTGTGGAGAGAG
TGGAAATGACAATAGGGAAAGAAACTCCTCCTCATCCCTTACAGAAGCAG
AGGCCAGTCATCCAAAGAAAAGAGGAATGGTTCTTCCATTTGAACCTTAT
TCCCTTACCTTTGATGAGGTTGTATACTCCGTTGACATGCCACAGCAAAT
GAAACTTCAAGGAGTTCCTGAAGATAAATTAGTGCTTTTGAATGGTGTGA
GCGGTGCTTTTCGGCCTGGTGTACTAACCGCTTTAATGGGTGTCAGTGGT
GCTGGTAAAACTACTTTGATGGATGTATTGGCTGGCAGGAAAACGGGTGG
ATATATTACTGGGGATATAAGAATATCTGGTTACCCAAAGAAGCAAGAAA
CGTTTGCTCGTATTTCAGGATACTGTGAGCAAAATGACATCCACTCTCCT
TTTGTTACTATATATGAGTCCTTGTTCTATTCGGCCTGGCTACGTTTACC
ACCTGAAGTTAATTCTGAAACCAGAAAGATGTTTATTTGAGGAAGTCATG
GAGCTTGTGGAGCTGAAACCATTGAGACAGTCACT
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