FC925239

Overview
NameFC925239
Unique NameFC925239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length585
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: AB32G_ARATH (ABC transporter G family member 32 OS=Arabidopsis thaliana GN=ABCG32 PE=1 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 2.645e-51
Identity = 96/141 (68.09%), Postives = 119/141 (84.40%), Query Frame = 1
Query:  115 KKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            K RGMVLPF+P SL+F  + Y VD+P  +K QG+ ED+L LL  ++GAFRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG I GD+ ISG+PK+QETFARISGYCEQND+HSP +T+ ESL +SA LRLP +++SET++ F+
Sbjct:  805 KNRGMVLPFQPLSLSFSNINYYVDVPLGLKEQGILEDRLQLLVNITGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGTIEGDVYISGFPKRQETFARISGYCEQNDVHSPCLTVVESLLFSACLRLPADIDSETQRAFV 945          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: AB31G_ARATH (ABC transporter G family member 31 OS=Arabidopsis thaliana GN=ABCG31 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 5.893e-51
Identity = 97/141 (68.79%), Postives = 118/141 (83.69%), Query Frame = 1
Query:  115 KKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            +K+GM+LPF+P ++TF  V Y VDMP++M+ QGVPE +L LL+ VSG F PGVLTAL+G SGAGKTTLMDVLAGRKTGGY  GDIRISG+PK+Q+TFARISGY EQNDIHSP VT+ ESL++SA LRLP E+  E +K F+
Sbjct:  813 EKKGMILPFKPLTMTFHNVNYYVDMPKEMRSQGVPETRLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYTEGDIRISGHPKEQQTFARISGYVEQNDIHSPQVTVEESLWFSASLRLPKEITKEQKKEFV 953          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: AB37G_ARATH (ABC transporter G family member 37 OS=Arabidopsis thaliana GN=ABCG37 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.715e-50
Identity = 97/170 (57.06%), Postives = 128/170 (75.29%), Query Frame = 1
Query:   28 QLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            +L    +S  D+  R  +   T++     ++  MVLPF+P ++TF ++ Y VDMP +M+ QG  + KL LL+ ++GAFRPG+LTALMGVSGAGKTTL+DVLAGRKT GYI GDIRISG+PK QETFAR+SGYCEQ DIHSP +T+ ES+ YSAWLRL PE+++ T+  F+
Sbjct:  811 ELQGTEKSTEDSSVRKKT---TDSPVKTEEEDKMVLPFKPLTVTFQDLNYFVDMPVEMRDQGYDQKKLQLLSDITGAFRPGILTALMGVSGAGKTTLLDVLAGRKTSGYIEGDIRISGFPKVQETFARVSGYCEQTDIHSPNITVEESVIYSAWLRLAPEIDATTKTKFV 977          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: PDR6_ORYSJ (Pleiotropic drug resistance protein 6 OS=Oryza sativa subsp. japonica GN=PDR6 PE=2 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 8.510e-50
Identity = 94/140 (67.14%), Postives = 114/140 (81.43%), Query Frame = 1
Query:  118 KRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            ++GMVLPF+P S+ F  + Y VD+P ++K QG+ ED+L LL  V+GAFRPG+LTAL+GVSGAGKTTLMDVLAGRKTGG I G I ISGYPK QETF RISGYCEQND+HSP +T+ ESL YSA LRLP  V+  TR++F+
Sbjct:  812 QKGMVLPFQPLSMCFKNINYYVDVPAELKSQGIVEDRLQLLIDVTGAFRPGILTALVGVSGAGKTTLMDVLAGRKTGGLIEGSITISGYPKNQETFTRISGYCEQNDVHSPCLTVIESLLYSACLRLPSHVDVNTRRVFV 951          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: AB33G_ARATH (ABC transporter G family member 33 OS=Arabidopsis thaliana GN=ABCG33 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.234e-49
Identity = 92/137 (67.15%), Postives = 114/137 (83.21%), Query Frame = 1
Query:  127 MVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            M+LPF+P ++TF ++ Y VD+P +MK QG  E KL LL+ ++GAFRPGVLTALMG+SGAGKTTL+DVLAGRKT GYI G+IRISG+ K QETFAR+SGYCEQ DIHSP +T+ ESL YSAWLRL PE+N +T+  F+
Sbjct:  804 MILPFKPLTITFQDLNYYVDVPVEMKGQGYNEKKLQLLSEITGAFRPGVLTALMGISGAGKTTLLDVLAGRKTSGYIEGEIRISGFLKVQETFARVSGYCEQTDIHSPSITVEESLIYSAWLRLVPEINPQTKIRFV 940          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: PDR13_ORYSJ (Pleiotropic drug resistance protein 13 OS=Oryza sativa subsp. japonica GN=PDR13 PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.096e-48
Identity = 93/148 (62.84%), Postives = 119/148 (80.41%), Query Frame = 1
Query:   94 EAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            E +     K+GM+LPF+P ++TF  V Y V+MP++M+ +GVPE +L LL+ VSG FRP VLTAL+G SG+GKTTLMDVLAGRKTGGYI GDIRISG+ K+Q TFARI+GY EQNDIHSP VT+ ESL++S+ LRLP +++ ETR  F+
Sbjct:  818 EGQTECKSKKGMILPFQPLTMTFHNVNYYVNMPKEMQAKGVPEKRLQLLSEVSGIFRPRVLTALVGASGSGKTTLMDVLAGRKTGGYIEGDIRISGHKKEQRTFARIAGYVEQNDIHSPQVTVEESLWFSSTLRLPNDISRETRHAFV 965          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: PDR3_TOBAC (Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum GN=PDR3 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 7.965e-48
Identity = 97/178 (54.49%), Postives = 125/178 (70.22%), Query Frame = 1
Query:   76 SSSSLTEAEA---------SHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI*GSHGACGAETIETV 582
            SS S+ +A+A         SH +   MVLPFEP SL F +V Y VD P  M   G  + +L LL+ ++GA RPG+LTALMGVSGAGKTTL+DVLAGRKT GY+ G+I++ GYPK QETFAR+SGYCEQ DIHSP +T+ ES+ +SAWLRL P+++S+T+  F+         E IET+
Sbjct:  812 SSDSIDKADAAENSKATMDSHERAGRMVLPFEPLSLVFQDVQYYVDTPAAMTELGFTQKRLQLLSDITGALRPGILTALMGVSGAGKTTLLDVLAGRKTTGYVEGEIKVGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLHPQIDSKTKYEFV--------KEVIETI 981          

HSP 2 Score: 67.781 bits (164), Expect = 4.565e-11
Identity = 34/88 (38.64%), Postives = 54/88 (61.36%), Query Frame = 1
Query:  226 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSA 486
            K+ +LN VSG  +PG +T L+G  G GKT+L+  L+G       ++G+I  +GY  ++    + S Y  QND+H P +T+ E+L YS+
Sbjct:  184 KIKILNDVSGVIKPGRMTLLLGPPGCGKTSLLKALSGNLDKSLKVSGEISYNGYKLEEFVPQKTSAYVSQNDLHIPEMTVRETLDYSS 271          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: AB43G_ARATH (ABC transporter G family member 43 OS=Arabidopsis thaliana GN=ABCG43 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.114e-41
Identity = 89/160 (55.62%), Postives = 115/160 (71.88%), Query Frame = 1
Query:   61 NRERNSSSSLTEAE-ASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            + ++N+ SS  +++ ASH K     LPFEP + TF +V Y ++ PQ  KLQ        LL+ V+GAF+PGVLTALMGVSGAGKTTL+DVL+GRKT G I G I + GY K Q+TF+R+SGYCEQ DIHSP +T+ ESL YSAWLRLP  ++SET+   +
Sbjct:  769 SHDKNTQSSEKDSKIASHSKN---ALPFEPLTFTFQDVQYFIETPQGKKLQ--------LLSDVTGAFKPGVLTALMGVSGAGKTTLLDVLSGRKTRGDIKGQIEVGGYVKVQDTFSRVSGYCEQFDIHSPNLTVQESLKYSAWLRLPCNISSETKSAIV 917          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: AB42G_ARATH (ABC transporter G family member 42 OS=Arabidopsis thaliana GN=ABCG42 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 5.529e-41
Identity = 87/155 (56.13%), Postives = 112/155 (72.26%), Query Frame = 1
Query:   61 NRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETR 525
            + E+N+ SS  +++ +   K    LPFEP + TF +V Y ++ PQ  KLQ        LL+GV+GAF+PGVLTALMGVSGAGKTTL+DVL+GRKT G I G I + GY K Q+TF+R+SGYCEQ DIHSP +T+ ESL YSAWLRL   ++SET+
Sbjct:  771 SHEKNTQSSENDSKIASRFKNA--LPFEPLTFTFQDVQYIIETPQGKKLQ--------LLSGVTGAFKPGVLTALMGVSGAGKTTLLDVLSGRKTFGDIKGQIEVGGYVKVQDTFSRVSGYCEQFDIHSPNLTVQESLKYSAWLRLTSNISSETK 915          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: AB30G_ARATH (ABC transporter G family member 30 OS=Arabidopsis thaliana GN=ABCG30 PE=2 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 7.983e-40
Identity = 84/159 (52.83%), Postives = 110/159 (69.18%), Query Frame = 1
Query:  106 SHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI*GSHGACGAETIETV 582
            S  K   ++LPF+P ++TF  V Y ++ PQ    Q        LL+ ++GA +PGVLT+LMGVSGAGKTTL+DVL+GRKT G I G+I++ GYPK QETFAR+SGYCEQ DIHSP +T+ ESL YSAWLRLP  ++S+T+   +         E +ETV
Sbjct:  792 SRAKTGKIILPFKPLTVTFQNVQYYIETPQGKTRQ--------LLSDITGALKPGVLTSLMGVSGAGKTTLLDVLSGRKTRGIIKGEIKVGGYPKVQETFARVSGYCEQFDIHSPNITVEESLKYSAWLRLPYNIDSKTKNELV--------KEVLETV 934          
The following BLAST results are available for this feature:
BLAST of FC925239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
AB32G_ARATH2.645e-5168.09ABC transporter G family member 32 OS=Arabidopsis ... [more]
AB31G_ARATH5.893e-5168.79ABC transporter G family member 31 OS=Arabidopsis ... [more]
AB37G_ARATH1.715e-5057.06ABC transporter G family member 37 OS=Arabidopsis ... [more]
PDR6_ORYSJ8.510e-5067.14Pleiotropic drug resistance protein 6 OS=Oryza sat... [more]
AB33G_ARATH3.234e-4967.15ABC transporter G family member 33 OS=Arabidopsis ... [more]
PDR13_ORYSJ2.096e-4862.84Pleiotropic drug resistance protein 13 OS=Oryza sa... [more]
PDR3_TOBAC7.965e-4854.49Pleiotropic drug resistance protein 3 OS=Nicotiana... [more]
AB43G_ARATH1.114e-4155.63ABC transporter G family member 43 OS=Arabidopsis ... [more]
AB42G_ARATH5.529e-4156.13ABC transporter G family member 42 OS=Arabidopsis ... [more]
AB30G_ARATH7.983e-4052.83ABC transporter G family member 30 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YE18FM1 TF Citrus clementina cDNA clone KN0AAP3YE18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925239 ID=FC925239; Name=FC925239; organism=Citrus clementina; type=EST; length=585bp
CAAGATAACACATTTGGAGGAACTGTTCAGTTATCAAACTGTGGAGAGAG
TGGAAATGACAATAGGGAAAGAAACTCCTCCTCATCCCTTACAGAAGCAG
AGGCCAGTCATCCAAAGAAAAGAGGAATGGTTCTTCCATTTGAACCTTAT
TCCCTTACCTTTGATGAGGTTGTATACTCCGTTGACATGCCACAGCAAAT
GAAACTTCAAGGAGTTCCTGAAGATAAATTAGTGCTTTTGAATGGTGTGA
GCGGTGCTTTTCGGCCTGGTGTACTAACCGCTTTAATGGGTGTCAGTGGT
GCTGGTAAAACTACTTTGATGGATGTATTGGCTGGCAGGAAAACGGGTGG
ATATATTACTGGGGATATAAGAATATCTGGTTACCCAAAGAAGCAAGAAA
CGTTTGCTCGTATTTCAGGATACTGTGAGCAAAATGACATCCACTCTCCT
TTTGTTACTATATATGAGTCCTTGTTCTATTCGGCCTGGCTACGTTTACC
ACCTGAAGTTAATTCTGAAACCAGAAAGATGTTTATTTGAGGAAGTCATG
GAGCTTGTGGAGCTGAAACCATTGAGACAGTCACT
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