FC925239

Overview
NameFC925239
Unique NameFC925239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length585
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: AB41G_ARATH (ABC transporter G family member 41 OS=Arabidopsis thaliana GN=ABCG41 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.323e-39
Identity = 84/159 (52.83%), Postives = 109/159 (68.55%), Query Frame = 1
Query:  106 SHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI*GSHGACGAETIETV 582
            S  K   ++LPF+P ++TF  V Y ++ PQ    Q        LL  ++GA +PGVLT+LMGVSGAGKTTL+DVL+GRKT G I G+IR+ GYPK QETFAR+SGYCEQ DIHSP +T+ ESL YSAWLRLP  ++++T+   +         E +ETV
Sbjct:  789 SRAKTGKVILPFKPLTVTFQNVQYYIETPQGKTRQ--------LLFDITGALKPGVLTSLMGVSGAGKTTLLDVLSGRKTRGIIKGEIRVGGYPKVQETFARVSGYCEQFDIHSPNITVEESLKYSAWLRLPYNIDAKTKNELV--------KEVLETV 931          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: ABCG6_DICDI (ABC transporter G family member 6 OS=Dictyostelium discoideum GN=abcG6 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.702e-24
Identity = 66/163 (40.49%), Postives = 94/163 (57.67%), Query Frame = 1
Query:   49 SGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            S ++N   N+S+  ++       + G  L F+      D  V   D P++ K Q     +L LL  + G  +PG + ALMG SGAGK+TL+DVLA RKTGG+ITG+I I+G P  + T  RI  Y EQ D+  P  T+ E++ +SA  RLPPEV  E R+ ++
Sbjct:  885 SPSNNNNNNNSNEKSKNGKDIGSETGSYLQFKKLCYAVDVKVDDPDNPKKKKSQ-----RLQLLTDIDGYVKPGQMLALMGPSGAGKSTLLDVLAQRKTGGHITGEILINGKPPSEFT-NRIRAYVEQMDVLPPTQTVREAIAFSARCRLPPEVTKEERESYV 1041          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: ABCG5_DICDI (ABC transporter G family member 5 OS=Dictyostelium discoideum GN=abcG5 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.021e-24
Identity = 67/163 (41.10%), Postives = 93/163 (57.06%), Query Frame = 1
Query:   49 SGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            S N N  +    S ++ + S   + G  L F+      D      D P++ K Q     +L LL  + G  +PG + ALMG SGAGK+TL+DVLA RKTGG+ITG+I I+G P  + T  RI  Y EQ D+  P  T+ E++ +SA  RLPPEV  E R++F+
Sbjct:  862 SKNGNHSKQKPISTSQKDIS--SETGSYLQFKKLCYAVDVKADDPDNPKKKKSQ-----RLQLLTDIDGYVKPGQMLALMGPSGAGKSTLLDVLAQRKTGGHITGEILINGKPPSEFT-NRIRAYVEQMDVLPPTQTVREAIAFSARCRLPPEVTKEEREIFV 1016          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: PDR5_YEAST (Pleiotropic ABC efflux transporter of multiple drugs OS=Saccharomyces cerevisiae GN=PDR5 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.580e-22
Identity = 53/101 (52.48%), Postives = 70/101 (69.31%), Query Frame = 1
Query:  235 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            +LN V G  +PG LTALMG SGAGKTTL+D LA R T G ITGDI ++G P + ++F R  GYC+Q D+H    T+ ESL +SA+LR P EV+ E +  ++
Sbjct:  887 ILNNVDGWVKPGTLTALMGASGAGKTTLLDCLAERVTMGVITGDILVNGIP-RDKSFPRSIGYCQQQDLHLKTATVRESLRFSAYLRQPAEVSIEEKNRYV 986          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: PDH1_CANGA (ATP-binding cassette transporter CGR1 OS=Candida glabrata GN=PDH1 PE=3 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 1.280e-21
Identity = 51/101 (50.50%), Postives = 69/101 (68.32%), Query Frame = 1
Query:  235 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            +LN V G  +PG LTALMG SGAGKTTL+D LA R T G ITGD+ ++G P +  +F+R  GYC+Q D+H    T+ ESL +SA+LR P  V+ E +  ++
Sbjct:  903 ILNNVDGWVKPGTLTALMGASGAGKTTLLDCLAERTTMGVITGDVMVNGRP-RDTSFSRSIGYCQQQDLHLKTATVRESLRFSAYLRQPSSVSIEEKNEYV 1002          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: ABCG2_DICDI (ABC transporter G family member 2 OS=Dictyostelium discoideum GN=abcG2 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 2.853e-21
Identity = 63/168 (37.50%), Postives = 98/168 (58.33%), Query Frame = 1
Query:   55 NDNRERNSSS-------SLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            ND R + +S        S  + + +   K    +P   Y + + ++VY VD+ +  K Q     +L LLN ++G  +PG+L ALMG SGAGK+TL+DVLA RKTGG+  G I I+G  ++ + F R+S Y EQ D+  P  T+ E++ +SA  RLP ++ +E +  F+
Sbjct:  676 NDKRSKKASKRSKKIKDSKVDIKENRMVKAQKEIPIGCY-MQWKDLVYEVDVKKDGKNQ-----RLRLLNEINGYVKPGMLLALMGPSGAGKSTLLDVLANRKTGGHTKGQILING-QERTKYFTRLSAYVEQFDVLPPTQTVKEAILFSAKTRLPSDMPNEEKIKFV 836          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: ABCGI_DICDI (ABC transporter G family member 18 OS=Dictyostelium discoideum GN=abcG18 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.726e-21
Identity = 57/128 (44.53%), Postives = 83/128 (64.84%), Query Frame = 1
Query:  154 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            + + ++VY VD+ +  K Q     +L LLNG++G  +PG+L ALMG SGAGK+TL+DVLA RKTGG+  G I I+G  ++ + F R S Y EQ DI +P  T+ E + +SA  RLP  V  + ++ F+
Sbjct:  808 MQWKDLVYEVDVKKDGKNQ-----RLRLLNGINGYVKPGMLVALMGPSGAGKSTLLDVLANRKTGGHTKGQILING-QERTKYFTRTSAYVEQMDILTPVSTVREVILFSAKNRLPNSVPIQEKEEFV 929          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: ABCGE_DICDI (ABC transporter G family member 14 OS=Dictyostelium discoideum GN=abcG14 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.866e-21
Identity = 53/108 (49.07%), Postives = 75/108 (69.44%), Query Frame = 1
Query:  214 VPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            VP  + +LLN + G  +PG +TALMG SGAGKTTL+DVLA RKT G + GD  ++G  + +  F RI+GY EQ D+H+P +T+ E+L +SA LR  PEV+ E +  ++
Sbjct:  816 VPGGERLLLNNIEGWIKPGQMTALMGSSGAGKTTLLDVLAKRKTLGVVEGDSHLNG-RELEIDFERITGYVEQMDVHNPGLTVREALRFSAKLRQEPEVSLEEKFKYV 922          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: ABCGB_DICDI (ABC transporter G family member 11 OS=Dictyostelium discoideum GN=abcG11 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.355e-21
Identity = 67/181 (37.02%), Postives = 103/181 (56.91%), Query Frame = 1
Query:    4 DNTFGG-TVQLSNCGESG--NDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            D+T GG T ++   G++   ND  E    +++     S+ K     L  +    T+  + Y+V +P   +L         LL+ + G  +PG +TALMG SGAGKTTL+DVLA RKT G + GD  ++G  + +  F RI+GY EQ D+H+P +T+ E+L +SA LR  PEV+ E +  ++
Sbjct:  758 DHTSGGYTHKVYKKGKAPKMNDVEEEKQQNAIVAKATSNMKD---TLHMDGGIFTWQNIRYTVKVPGGERL---------LLDNIEGWIKPGQMTALMGSSGAGKTTLLDVLAKRKTLGVVEGDSHLNG-RELEIDFERITGYVEQMDVHNPGLTVREALRFSAKLRQEPEVSLEEKFKYV 925          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: ABCGA_DICDI (ABC transporter G family member 10 OS=Dictyostelium discoideum GN=abcG10 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.416e-20
Identity = 61/161 (37.89%), Postives = 91/161 (56.52%), Query Frame = 1
Query:   55 NDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            ND+ E    +++ E   S  K     L       T++ + Y+V +  +          L+LLN V G  +PG +TALMG SGAGKTTL+DVLA RKT G +TG   ++G  +    F RI+GY EQ D+H+P +T+ E+L +SA LR  P V+ + +  ++
Sbjct:  808 NDDEEERQQNAMVENATSKMKD---TLKMRESCFTWNHIHYTVQLNGK---------DLLLLNDVEGWIKPGQMTALMGSSGAGKTTLLDVLAKRKTMGTVTGKCLLNG-KELNIDFERITGYVEQMDVHNPGLTVREALRFSAKLRQEPTVSLQDKYEYV 955          
The following BLAST results are available for this feature:
BLAST of FC925239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
AB41G_ARATH2.323e-3952.83ABC transporter G family member 41 OS=Arabidopsis ... [more]
ABCG6_DICDI4.702e-2440.49ABC transporter G family member 6 OS=Dictyostelium... [more]
ABCG5_DICDI8.021e-2441.10ABC transporter G family member 5 OS=Dictyostelium... [more]
PDR5_YEAST2.580e-2252.48Pleiotropic ABC efflux transporter of multiple dru... [more]
PDH1_CANGA1.280e-2150.50ATP-binding cassette transporter CGR1 OS=Candida g... [more]
ABCG2_DICDI2.853e-2137.50ABC transporter G family member 2 OS=Dictyostelium... [more]
ABCGI_DICDI3.726e-2144.53ABC transporter G family member 18 OS=Dictyosteliu... [more]
ABCGE_DICDI4.866e-2149.07ABC transporter G family member 14 OS=Dictyosteliu... [more]
ABCGB_DICDI6.355e-2137.02ABC transporter G family member 11 OS=Dictyosteliu... [more]
ABCGA_DICDI1.416e-2037.89ABC transporter G family member 10 OS=Dictyosteliu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP3YE18FM1 TF Citrus clementina cDNA clone KN0AAP3YE18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925239 ID=FC925239; Name=FC925239; organism=Citrus clementina; type=EST; length=585bp
CAAGATAACACATTTGGAGGAACTGTTCAGTTATCAAACTGTGGAGAGAG
TGGAAATGACAATAGGGAAAGAAACTCCTCCTCATCCCTTACAGAAGCAG
AGGCCAGTCATCCAAAGAAAAGAGGAATGGTTCTTCCATTTGAACCTTAT
TCCCTTACCTTTGATGAGGTTGTATACTCCGTTGACATGCCACAGCAAAT
GAAACTTCAAGGAGTTCCTGAAGATAAATTAGTGCTTTTGAATGGTGTGA
GCGGTGCTTTTCGGCCTGGTGTACTAACCGCTTTAATGGGTGTCAGTGGT
GCTGGTAAAACTACTTTGATGGATGTATTGGCTGGCAGGAAAACGGGTGG
ATATATTACTGGGGATATAAGAATATCTGGTTACCCAAAGAAGCAAGAAA
CGTTTGCTCGTATTTCAGGATACTGTGAGCAAAATGACATCCACTCTCCT
TTTGTTACTATATATGAGTCCTTGTTCTATTCGGCCTGGCTACGTTTACC
ACCTGAAGTTAATTCTGAAACCAGAAAGATGTTTATTTGAGGAAGTCATG
GAGCTTGTGGAGCTGAAACCATTGAGACAGTCACT
back to top