FC925239

Overview
NameFC925239
Unique NameFC925239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length585
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: PDR15_YEAST (ATP-dependent permease PDR15 OS=Saccharomyces cerevisiae GN=PDR15 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.154e-20
Identity = 51/101 (50.50%), Postives = 67/101 (66.34%), Query Frame = 1
Query:  235 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            +LN V G  +PG LTALMG SGAGKTTL+D LA R T G ITG+I + G   + E+F R  GYC+Q D+H    T+ ESL +SA+LR P  V+ E +  ++
Sbjct:  902 ILNNVDGWVKPGTLTALMGASGAGKTTLLDCLAERVTMGVITGNIFVDG-RLRDESFPRSIGYCQQQDLHLKTATVRESLRFSAYLRQPSSVSIEEKNRYV 1001          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: PDR10_YEAST (ATP-dependent permease PDR10 OS=Saccharomyces cerevisiae GN=PDR10 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.380e-20
Identity = 50/108 (46.30%), Postives = 70/108 (64.81%), Query Frame = 1
Query:  214 VPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            +   K  +L+ V G  +PG LTAL+G SGAGKTTL+D LA R T G ITGD+ + G P+ Q +F R  GYC+Q D+H    T+ ESL +SA+LR   +V+ E +  ++
Sbjct:  934 IKNGKRRILDNVDGWVKPGTLTALIGASGAGKTTLLDCLAERTTMGLITGDVFVDGRPRDQ-SFPRSIGYCQQQDLHLKTATVRESLRFSAYLRQADDVSIEEKDKYV 1040          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: ADP1_YEAST (Probable ATP-dependent permease OS=Saccharomyces cerevisiae GN=ADP1 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 9.177e-20
Identity = 48/126 (38.10%), Postives = 84/126 (66.67%), Query Frame = 1
Query:  151 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRK 528
            +L+F+ + YSV     +   GV E    +LN +SG  +PG + A+MG SGAGKTTL+D+LA ++  G+++G I+++G    +++F++I G+ +Q+D   P +T++E++  SA LRLP  ++ E +K
Sbjct:  383 TLSFENITYSVP---SINSDGVEE---TVLNEISGIVKPGQILAIMGGSGAGKTTLLDILAMKRKTGHVSGSIKVNGISMDRKSFSKIIGFVDQDDFLLPTLTVFETVLNSALLRLPKALSFEAKK 502          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: ABCGL_DICDI (ABC transporter G family member 21 OS=Dictyostelium discoideum GN=abcG21 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.487e-19
Identity = 51/100 (51.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query:  226 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETR 525
            K +LL+ V G  +PG +TALMG SGAGKTTL+DVLA RKT G + G   ++G P + + F RI+GY EQ D+H+P +T+ E+L +SA LR  P V+ E +
Sbjct:  833 KRLLLDNVEGWIKPGQMTALMGSSGAGKTTLLDVLAKRKTMGEVQGKCFLNGKPLEID-FERITGYVEQMDVHNPGLTVREALRFSAKLRQEPSVSLEEK 931          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: ABCG9_DICDI (ABC transporter G family member 9 OS=Dictyostelium discoideum GN=abcG9 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.948e-19
Identity = 60/161 (37.27%), Postives = 88/161 (54.66%), Query Frame = 1
Query:   55 NDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            ND  E    + +     S  K     L       T++ + Y+V + +  KL         LL+ V G  +PG +TALMG SGAGKTTL+DVLA RKT G + G   ++G   + + F RI+GY EQ D+H+P +T+ E+L +SA LR  P V+ E +  ++
Sbjct:  792 NDAEEERKQNEIVAKATSEMKD---TLKMRGGVFTWENIKYTVPVGKTQKL---------LLDDVEGWIKPGQMTALMGSSGAGKTTLLDVLAKRKTLGTVQGKTFLNGKALEID-FERITGYVEQMDVHNPGLTVREALRFSAKLRQEPSVSLEEKYDYV 939          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: ABCGJ_DICDI (ABC transporter G family member 19 OS=Dictyostelium discoideum GN=abcG19 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.015e-18
Identity = 51/100 (51.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:  226 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETR 525
            K +LL+ V G  +PG +TALMG SGAGKTTL+DVLA RKT G + G   ++G P + + F RI+GY EQ D+H+P +T+ E+L +SA LR  P V  E +
Sbjct:  833 KRLLLDNVEGWIKPGQMTALMGSSGAGKTTLLDVLAKRKTMGEVQGKCFLNGKPLEID-FERITGYVEQMDVHNPGLTVREALRFSAKLRQEPSVLLEEK 931          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: ABCGF_DICDI (ABC transporter G family member 15 OS=Dictyostelium discoideum GN=abcG15 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.952e-18
Identity = 59/158 (37.34%), Postives = 91/158 (57.59%), Query Frame = 1
Query:   67 ERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMP-QQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            E     +L   +A++  K  + +P   +  T+  + YSV +    MKL         LL+ + G  +PG +TALMG SGAGKTTL+DVLA RKT G + G   ++G P + + F RI+GY EQ D+ +P +T+ E+L +SA LR  P ++ E +  ++
Sbjct:  815 ENEKQQNLLVQQATNNMKESLSMPGGLF--TWQHMYYSVPIGGNTMKL---------LLDDIQGWIKPGQMTALMGSSGAGKTTLLDVLAKRKTTGQVQGTTLLNGKPLEID-FERITGYVEQMDVLNPALTVRETLRFSAKLRGEPTISLEEKFKYV 960          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: ABCGH_DICDI (ABC transporter G family member 17 OS=Dictyostelium discoideum GN=abcG17-1 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.035e-18
Identity = 48/102 (47.06%), Postives = 71/102 (69.61%), Query Frame = 1
Query:  232 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            +LL+ + G  +PG +TALMG SGAGKTTL+DVLA RKT G +TG+  ++G  + +  F RI+GY EQ D+H+P +T+ E+L +SA LR  P V  + +  ++
Sbjct:  855 LLLDDIMGWIKPGQMTALMGSSGAGKTTLLDVLAKRKTMGTVTGESLLNG-KQLEIDFERITGYVEQMDVHNPGLTVREALRFSAKLRQEPWVPLKDKYQYV 955          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: ABCG3_DICDI (ABC transporter G family member 3 OS=Dictyostelium discoideum GN=abcG3 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.913e-17
Identity = 59/129 (45.74%), Postives = 73/129 (56.59%), Query Frame = 1
Query:  154 LTFDEVVYSVDMPQQMKLQGVPED-KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            +TF  + Y V   +  K  G  E   L LL  V+G   PG + ALMG SGAGK+TLMDVLA RK  G ITGDIRI+G   K     R +GY EQ DI S  +T+ E++ +SA  RLP     + R   I
Sbjct:  783 MTFQNLNYVVPSVKDNKETGKKEKVTLELLKDVNGFIVPG-MCALMGPSGAGKSTLMDVLAKRKNVGTITGDIRINGQLVKDMNITRFTGYVEQQDILSANLTVREAIEFSANCRLPSSYLQKDRVKLI 910          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: ABCGG_DICDI (ABC transporter G family member 16 OS=Dictyostelium discoideum GN=abcG16 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.271e-17
Identity = 56/164 (34.15%), Postives = 85/164 (51.83%), Query Frame = 1
Query:   49 SGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYS---LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKM 531
            +GN N   N   S+ E       K+     FE      LTF  + Y V     +K +   +    LL+ ++G  +PG + AL+G SGAGK+TL+D+LA RK  G I+G+I ++G   + + F R   Y EQ D    F T+ E++ +SA LRLP +  +   K+
Sbjct:  799 NGNGNNNYNGKESINEESIKLSIKQHQQKQFESNEKCYLTFKNLTYKV----LIKKKNHQKVSRTLLHDINGYVKPGSMVALIGSSGAGKSTLLDILANRKDQGIISGEILLNG-KARDKCFNRYVAYVEQEDTLPDFQTVREAITFSALLRLPNDTMTHQDKL 957          
The following BLAST results are available for this feature:
BLAST of FC925239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
PDR15_YEAST3.154e-2050.50ATP-dependent permease PDR15 OS=Saccharomyces cere... [more]
PDR10_YEAST5.380e-2046.30ATP-dependent permease PDR10 OS=Saccharomyces cere... [more]
ADP1_YEAST9.177e-2038.10Probable ATP-dependent permease OS=Saccharomyces c... [more]
ABCGL_DICDI3.487e-1951.00ABC transporter G family member 21 OS=Dictyosteliu... [more]
ABCG9_DICDI5.948e-1937.27ABC transporter G family member 9 OS=Dictyostelium... [more]
ABCGJ_DICDI1.015e-1851.00ABC transporter G family member 19 OS=Dictyosteliu... [more]
ABCGF_DICDI2.952e-1837.34ABC transporter G family member 15 OS=Dictyosteliu... [more]
ABCGH_DICDI5.035e-1847.06ABC transporter G family member 17 OS=Dictyosteliu... [more]
ABCG3_DICDI1.913e-1745.74ABC transporter G family member 3 OS=Dictyostelium... [more]
ABCGG_DICDI7.271e-1734.15ABC transporter G family member 16 OS=Dictyosteliu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YE18FM1 TF Citrus clementina cDNA clone KN0AAP3YE18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925239 ID=FC925239; Name=FC925239; organism=Citrus clementina; type=EST; length=585bp
CAAGATAACACATTTGGAGGAACTGTTCAGTTATCAAACTGTGGAGAGAG
TGGAAATGACAATAGGGAAAGAAACTCCTCCTCATCCCTTACAGAAGCAG
AGGCCAGTCATCCAAAGAAAAGAGGAATGGTTCTTCCATTTGAACCTTAT
TCCCTTACCTTTGATGAGGTTGTATACTCCGTTGACATGCCACAGCAAAT
GAAACTTCAAGGAGTTCCTGAAGATAAATTAGTGCTTTTGAATGGTGTGA
GCGGTGCTTTTCGGCCTGGTGTACTAACCGCTTTAATGGGTGTCAGTGGT
GCTGGTAAAACTACTTTGATGGATGTATTGGCTGGCAGGAAAACGGGTGG
ATATATTACTGGGGATATAAGAATATCTGGTTACCCAAAGAAGCAAGAAA
CGTTTGCTCGTATTTCAGGATACTGTGAGCAAAATGACATCCACTCTCCT
TTTGTTACTATATATGAGTCCTTGTTCTATTCGGCCTGGCTACGTTTACC
ACCTGAAGTTAATTCTGAAACCAGAAAGATGTTTATTTGAGGAAGTCATG
GAGCTTGTGGAGCTGAAACCATTGAGACAGTCACT
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