FC925239

Overview
NameFC925239
Unique NameFC925239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length585
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: CDR4_CANAL (ABC transporter CDR4 OS=Candida albicans GN=CDR4 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.763e-16
Identity = 47/118 (39.83%), Postives = 74/118 (62.71%), Query Frame = 1
Query:  184 DMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            D+  Q+K++   ED+ V+L+ VSG  +PG +TALMG SGAGKTTL++ L+ R T G +T  IR+        +F R  GY +Q D+H    T+ E+L ++A+LR P  V+ + +  ++
Sbjct:  850 DLTYQVKIKS--EDR-VILDHVSGWVKPGQVTALMGASGAGKTTLLNALSDRLTTGVVTEGIRLVNGRPLDSSFQRSIGYVQQQDLHLETSTVREALEFAAYLRQPKSVSRKEKNEYV 964          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: ABCGO_DICDI (ABC transporter G family member 24 OS=Dictyostelium discoideum GN=abcG24 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.609e-16
Identity = 45/98 (45.92%), Postives = 66/98 (67.35%), Query Frame = 1
Query:  235 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRK 528
            +L+ V+G   PG LTALMG+SG+GKT+L+D+L+GRK  G I G + I+G P   + F RISGY  Q+DI    +T  E L ++A L+LP  ++ E ++
Sbjct:  479 ILDNVNGVCPPGQLTALMGLSGSGKTSLLDILSGRKNVGNIDGKVLINGAP-VGKNFKRISGYVTQDDIQIGTLTCREHLMFAALLKLPENMSLEIKQ 575          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: BFR1_SCHPO (Brefeldin A resistance protein OS=Schizosaccharomyces pombe GN=bfr1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.713e-16
Identity = 48/92 (52.17%), Postives = 60/92 (65.22%), Query Frame = 1
Query:  235 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEV 510
            LLNGV G   PG LTALMG SGAGKTTL++VLA R   G +TGD+ ++G      TF R +GY +Q D+H    T+ E+L +SA LR P  V
Sbjct:  900 LLNGVQGFVVPGKLTALMGESGAGKTTLLNVLAQRVDTGVVTGDMLVNG-RGLDSTFQRRTGYVQQQDVHIGESTVREALRFSAALRQPASV 990          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: AB17G_ARATH (ABC transporter G family member 17 OS=Arabidopsis thaliana GN=ABCG17 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.713e-16
Identity = 44/134 (32.84%), Postives = 77/134 (57.46%), Query Frame = 1
Query:  133 LPFEPYSLTFDEVVYSVDMPQQMKLQ--GVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRK 528
            +P  P+ L F+++ Y+V + Q+  L+    P     LLNG++G  + G + A++G SGAGK+TL+D LAG+   G + G + ++G   +      IS Y  Q D+  P +T+ E+L ++A  RLP  ++   ++
Sbjct:   15 IPPIPFVLAFNDLTYNVTLQQRFGLRFGHSPAKIKTLLNGITGEAKEGEILAILGASGAGKSTLIDALAGQIAEGSLKGTVTLNGEALQSRLLRVISAYVMQEDLLFPMLTVEETLMFAAEFRLPRSLSKSKKR 148          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: AB14G_ARATH (ABC transporter G family member 14 OS=Arabidopsis thaliana GN=ABCG14 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.713e-16
Identity = 47/135 (34.81%), Postives = 79/135 (58.52%), Query Frame = 1
Query:  124 GMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDK-LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETR 525
            G+ +   P +L F+EVVY V + Q  +  G  + K   +LNG++G   PG   A++G SG+GKTTL+  L GR +  + +G +  +G P       R +G+  Q+D+  P +T++E+LF++A LRLP  +  + +
Sbjct:   43 GLQMSMYPITLKFEEVVYKVKIEQTSQCMGSWKSKEKTILNGITGMVCPGEFLAMLGPSGSGKTTLLSALGGRLSKTF-SGKVMYNGQP-FSGCIKRRTGFVAQDDVLYPHLTVWETLFFTALLRLPSSLTRDEK 175          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: AB20G_ARATH (ABC transporter G family member 20 OS=Arabidopsis thaliana GN=ABCG20 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.155e-16
Identity = 54/177 (30.51%), Postives = 91/177 (51.41%), Query Frame = 1
Query:   31 LSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKL-----------QGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRK 528
            L +  + G+D       +  +   +S P  R  V    P+ L+F ++ YSV + ++ K              +  +  VLLNG+SG  R G + A++G SG+GK+TL+D LA R +   + GDI ++G   +      IS Y  Q+D+  P +T+ E+L +SA  RLP  ++ + +K
Sbjct:   49 LMSVEDEGDDQSRAMDIAVASNFWSSVPSSR--VPSSSPFVLSFKDLTYSVKIKKKFKPFPCCGNSPFDGNDMEMNTKVLLNGISGEAREGEMMAVLGASGSGKSTLIDALANRISKESLRGDITLNGEVLESSLHKVISAYVMQDDLLFPMLTVEETLMFSAEFRLPSSLSKKKKK 223          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: CDR1_CANAL (Multidrug resistance protein CDR1 OS=Candida albicans GN=CDR1 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.050e-15
Identity = 47/124 (37.90%), Postives = 76/124 (61.29%), Query Frame = 1
Query:  166 EVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            E+ +  D+  Q+K++   ED+ V+L+ V G  +PG +TALMG SGAGKTTL++ L+ R T G IT   R+        +F R  GY +Q D+H P  T+ E+L +SA+LR   +++ + +  ++
Sbjct:  857 EIFFWRDLTYQVKIK--KEDR-VILDHVDGWVKPGQITALMGASGAGKTTLLNCLSERVTTGIITDGERLVNGHALDSSFQRSIGYVQQQDVHLPTSTVREALQFSAYLRQSNKISKKEKDDYV 977          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: SNQ2_YEAST (Protein SNQ2 OS=Saccharomyces cerevisiae GN=SNQ2 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.055e-15
Identity = 47/104 (45.19%), Postives = 66/104 (63.46%), Query Frame = 1
Query:  226 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            K +LL+ VSG   PG +TALMG SGAGKTTL++ LA R   G ITGD+ ++G P    +F R +GY +Q DIH   +T+ ESL +SA +R P  +    +  ++
Sbjct:  868 KRMLLDNVSGYCIPGTMTALMGESGAGKTTLLNTLAQRNV-GIITGDMLVNGRP-IDASFERRTGYVQQQDIHIAELTVRESLQFSARMRRPQHLPDSEKMDYV 969          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: ABCGM_DICDI (ABC transporter G family member 22 OS=Dictyostelium discoideum GN=abcG22 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.055e-15
Identity = 46/117 (39.32%), Postives = 70/117 (59.83%), Query Frame = 1
Query:  151 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLP 501
            ++TF ++ YSV          V + K+ +L GVSG   PG L A+ G SG+GKTTL+D+LA RK  G I+G + I+G  +  + + R+  Y  Q D+  P +T+ E+L + A L+LP
Sbjct:   30 TITFKDLAYSVT---------VKKKKMQILKGVSGTVTPGELVAVFGPSGSGKTTLLDILANRKESGEISGAVLING-NEIDDDYKRLCSYVVQEDVLLPTITVRETLRFYADLKLP 136          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: CDR3_CANAL (Opaque-specific ABC transporter CDR3 OS=Candida albicans GN=CDR3 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.211e-15
Identity = 42/108 (38.89%), Postives = 64/108 (59.26%), Query Frame = 1
Query:  214 VPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            +  ++ V+LN + G  +PG +TALMG SGAGKTTL++ L+ R T G IT   R+    +   +F R  GY +Q D+H    T+ E+L +SA LR P  V+   +  ++
Sbjct:  851 IKSEERVILNNIDGWVKPGEVTALMGASGAGKTTLLNALSERLTTGVITSGTRMVNGGELDSSFQRSIGYVQQQDLHLETSTVREALKFSARLRQPNSVSIAEKDSYV 958          
The following BLAST results are available for this feature:
BLAST of FC925239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
CDR4_CANAL2.763e-1639.83ABC transporter CDR4 OS=Candida albicans GN=CDR4 P... [more]
ABCGO_DICDI3.609e-1645.92ABC transporter G family member 24 OS=Dictyosteliu... [more]
BFR1_SCHPO4.713e-1652.17Brefeldin A resistance protein OS=Schizosaccharomy... [more]
AB17G_ARATH4.713e-1632.84ABC transporter G family member 17 OS=Arabidopsis ... [more]
AB14G_ARATH4.713e-1634.81ABC transporter G family member 14 OS=Arabidopsis ... [more]
AB20G_ARATH6.155e-1630.51ABC transporter G family member 20 OS=Arabidopsis ... [more]
CDR1_CANAL1.050e-1537.90Multidrug resistance protein CDR1 OS=Candida albic... [more]
SNQ2_YEAST3.055e-1545.19Protein SNQ2 OS=Saccharomyces cerevisiae GN=SNQ2 P... [more]
ABCGM_DICDI3.055e-1539.32ABC transporter G family member 22 OS=Dictyosteliu... [more]
CDR3_CANAL5.211e-1538.89Opaque-specific ABC transporter CDR3 OS=Candida al... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YE18FM1 TF Citrus clementina cDNA clone KN0AAP3YE18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925239 ID=FC925239; Name=FC925239; organism=Citrus clementina; type=EST; length=585bp
CAAGATAACACATTTGGAGGAACTGTTCAGTTATCAAACTGTGGAGAGAG
TGGAAATGACAATAGGGAAAGAAACTCCTCCTCATCCCTTACAGAAGCAG
AGGCCAGTCATCCAAAGAAAAGAGGAATGGTTCTTCCATTTGAACCTTAT
TCCCTTACCTTTGATGAGGTTGTATACTCCGTTGACATGCCACAGCAAAT
GAAACTTCAAGGAGTTCCTGAAGATAAATTAGTGCTTTTGAATGGTGTGA
GCGGTGCTTTTCGGCCTGGTGTACTAACCGCTTTAATGGGTGTCAGTGGT
GCTGGTAAAACTACTTTGATGGATGTATTGGCTGGCAGGAAAACGGGTGG
ATATATTACTGGGGATATAAGAATATCTGGTTACCCAAAGAAGCAAGAAA
CGTTTGCTCGTATTTCAGGATACTGTGAGCAAAATGACATCCACTCTCCT
TTTGTTACTATATATGAGTCCTTGTTCTATTCGGCCTGGCTACGTTTACC
ACCTGAAGTTAATTCTGAAACCAGAAAGATGTTTATTTGAGGAAGTCATG
GAGCTTGTGGAGCTGAAACCATTGAGACAGTCACT
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