FC925239

Overview
NameFC925239
Unique NameFC925239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length585
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: CDR2_CANAL (Multidrug resistance protein CDR2 OS=Candida albicans GN=CDR2 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.211e-15
Identity = 46/124 (37.10%), Postives = 75/124 (60.48%), Query Frame = 1
Query:  166 EVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            E+ +  D+  Q+K++   ED+ V+L+ V G  +PG +TALMG SGAGKTTL++ L+ R T G IT   R+        +F R  GY +Q D+H    T+ E+L +SA+LR   +++ + +  ++
Sbjct:  855 EIFFWRDLTYQVKIK--KEDR-VILDHVDGWVKPGQITALMGASGAGKTTLLNCLSERVTTGIITDGERLVNGHALDSSFQRSIGYVQQQDVHLETTTVREALQFSAYLRQSNKISKKEKDDYV 975          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: YN99_YEAST (Uncharacterized ABC transporter ATP-binding protein/permease YNR070W OS=Saccharomyces cerevisiae GN=YNR070W PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.161e-14
Identity = 45/101 (44.55%), Postives = 63/101 (62.38%), Query Frame = 1
Query:  235 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            LL+ VSG   PG LTAL+G SGAGKTTL++ LA R   G ITGD+ + G P    +F R +GY +Q D+H   +T+ ESL +SA +R P  +    +  ++
Sbjct:  747 LLDSVSGYCVPGTLTALIGESGAGKTTLLNTLAQRNV-GTITGDMLVDGLP-MDASFKRRTGYVQQQDLHVAELTVKESLQFSARMRRPQSIPDAEKMEYV 845          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: AB22G_ARATH (ABC transporter G family member 22 OS=Arabidopsis thaliana GN=ABCG22 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.161e-14
Identity = 52/145 (35.86%), Postives = 79/145 (54.48%), Query Frame = 1
Query:   94 EAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRK 528
            + EA   K +    P  P  L F +V Y V +    KL    E ++  L G+SG+  PG + ALMG SG+GKTTL+ +LAGR +     G +  +  P  +   ++I G+  Q+D+  P +T+ E+L Y+A LRLP  +  E +K
Sbjct:  137 DIEAGKKKPKFQAEPTLPIFLKFRDVTYKVVIK---KLTSSVEKEI--LTGISGSVNPGEVLALMGPSGSGKTTLLSLLAGRISQSSTGGSVTYNDKPYSKYLKSKI-GFVTQDDVLFPHLTVKETLTYAARLRLPKTLTREQKK 275          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: AB2G_ARATH (ABC transporter G family member 2 OS=Arabidopsis thaliana GN=ABCG2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.516e-14
Identity = 50/160 (31.25%), Postives = 84/160 (52.50%), Query Frame = 1
Query:   73 NSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPE--------DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRK 528
            NS++S   + AS P      +   P+ L+F ++ YSV + ++                +  +LLNG+SG  R G + A++G SG+GK+TL+D LA R     + G I ++G   +      IS Y  Q+D+  P +T+ E+L +SA  RLP  ++ + +K
Sbjct:   74 NSAASSFNSWASAPASS---ISSSPFVLSFTDLTYSVKIQKKFNPLACCRRSGNDSSVNTKILLNGISGEAREGEMMAVLGASGSGKSTLIDALANRIAKDSLRGSITLNGEVLESSMQKVISAYVMQDDLLFPMLTVEETLMFSAEFRLPRSLSKKKKK 230          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: AB10G_ARATH (ABC transporter G family member 10 OS=Arabidopsis thaliana GN=ABCG10 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.516e-14
Identity = 39/93 (41.94%), Postives = 61/93 (65.59%), Query Frame = 1
Query:  220 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRL 498
            +++ V+L  VS   R   +TA+ G SGAGKTTL+++LAG+ + G ++G + ++G P     + R+SG+  Q D   PF+T+ E+L YSA LRL
Sbjct:   45 KEEKVILKDVSCDARSAEITAIAGPSGAGKTTLLEILAGKVSHGKVSGQVLVNGRPMDGPEYRRVSGFVPQEDALFPFLTVQETLTYSALLRL 137          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: AB21G_ARATH (ABC transporter G family member 21 OS=Arabidopsis thaliana GN=ABCG21 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.980e-14
Identity = 56/181 (30.94%), Postives = 90/181 (49.72%), Query Frame = 1
Query:    1 QDNTFGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVL--PFEPYSLTFDEVVYSVDMPQQMKLQGV----PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETR 525
            Q+N F     ++ C +  ND+              SH  ++  VL     P  L F+E+ YS+               P+   ++L  VSG  +PG L A++G SG+GKTTL+  LAGR   G ++G +  +G P    +  R +G+  Q+D+  P +T+ E+L Y+A LRLP E+  + +
Sbjct:   26 QENRFSSPSHVNPCLDDDNDHDG-----------PSHQSRQSSVLRQSLRPIILKFEELTYSIKSQTGKGSYWFGSQEPKPNRLVLKCVSGIVKPGELLAMLGPSGSGKTTLVTALAGR-LQGKLSGTVSYNGEP-FTSSVKRKTGFVTQDDVLYPHLTVMETLTYTALLRLPKELTRKEK 193          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: AB1G_ARATH (ABC transporter G family member 1 OS=Arabidopsis thaliana GN=ABCG1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.586e-14
Identity = 44/145 (30.34%), Postives = 77/145 (53.10%), Query Frame = 1
Query:  145 PYSLTFDEVVYSVDMPQQMKLQGV----------------PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKM 531
            P+ L+FD + Y+V +  ++  + +                P+ K  LLN +SG  R G + A++G SG+GK+TL+D LA R   G + G ++++G   +      IS Y  Q+D+  P +T+ E+L ++A  RLP  +    +K+
Sbjct:   64 PFVLSFDNLTYNVSVRPKLDFRNLFPRRRTEDPEIAQTARPKTK-TLLNNISGETRDGEIMAVLGASGSGKSTLIDALANRIAKGSLKGTVKLNGETLQSRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSLPKSKKKL 207          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: ABCG1_MOUSE (ATP-binding cassette sub-family G member 1 OS=Mus musculus GN=Abcg1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.378e-14
Identity = 47/117 (40.17%), Postives = 71/117 (60.68%), Query Frame = 1
Query:  151 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-RKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRL 498
            ++ F ++ YSV      K +G       LL G+SG F  G L A+MG SGAGK+TLM++LAG R+TG  + G + I+G P+    F ++S Y  Q+D+  P +T+ E++  SA L+L
Sbjct:   76 NIEFKDLSYSVPEGPWWKKKGYK----TLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETG--MKGAVLINGMPRDLRCFRKVSCYIMQDDMLLPHLTVQEAMMVSAHLKL 186          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: ABCG1_HUMAN (ATP-binding cassette sub-family G member 1 OS=Homo sapiens GN=ABCG1 PE=2 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 3.378e-14
Identity = 52/142 (36.62%), Postives = 84/142 (59.15%), Query Frame = 1
Query:   82 SSLTEAE--ASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-RKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRL 498
            ++LTEA+  +S P++  +       ++ F ++ YSV      + +G       LL G+SG F  G L A+MG SGAGK+TLM++LAG R+TG  + G + I+G P+    F ++S Y  Q+D+  P +T+ E++  SA L+L
Sbjct:   58 NNLTEAQRFSSLPRRAAV-------NIEFRDLSYSVPEGPWWRKKGYK----TLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETG--MKGAVLINGLPRDLRCFRKVSCYIMQDDMLLPHLTVQEAMMVSAHLKL 186          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: AB6G_ARATH (ABC transporter G family member 6 OS=Arabidopsis thaliana GN=ABCG6 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.378e-14
Identity = 43/142 (30.28%), Postives = 78/142 (54.93%), Query Frame = 1
Query:  145 PYSLTFDEVVYSVDMPQQMKLQ-------GVPEDKL------VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKM 531
            P+ L+F ++ YSV + ++   +       G P + +       LLNG++G  R G + A++G SG+GK+TL+D LA R   G + G++ ++G     +    IS Y  Q+D+  P +T+ E+L ++A  RLP  ++   + +
Sbjct:   65 PFVLSFTDLTYSVKVRRKFTWRRSVSSDPGAPSEGIFSSKTKTLLNGITGEARDGEILAVLGASGSGKSTLIDALANRIAKGSLKGNVTLNGEVLNSKMQKAISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSLSKSKKSL 206          
The following BLAST results are available for this feature:
BLAST of FC925239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
CDR2_CANAL5.211e-1537.10Multidrug resistance protein CDR2 OS=Candida albic... [more]
YN99_YEAST1.161e-1444.55Uncharacterized ABC transporter ATP-binding protei... [more]
AB22G_ARATH1.161e-1435.86ABC transporter G family member 22 OS=Arabidopsis ... [more]
AB2G_ARATH1.516e-1431.25ABC transporter G family member 2 OS=Arabidopsis t... [more]
AB10G_ARATH1.516e-1441.94ABC transporter G family member 10 OS=Arabidopsis ... [more]
AB21G_ARATH1.980e-1430.94ABC transporter G family member 21 OS=Arabidopsis ... [more]
AB1G_ARATH2.586e-1430.34ABC transporter G family member 1 OS=Arabidopsis t... [more]
ABCG1_MOUSE3.378e-1440.17ATP-binding cassette sub-family G member 1 OS=Mus ... [more]
ABCG1_HUMAN3.378e-1436.62ATP-binding cassette sub-family G member 1 OS=Homo... [more]
AB6G_ARATH3.378e-1430.28ABC transporter G family member 6 OS=Arabidopsis t... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP3YE18FM1 TF Citrus clementina cDNA clone KN0AAP3YE18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925239 ID=FC925239; Name=FC925239; organism=Citrus clementina; type=EST; length=585bp
CAAGATAACACATTTGGAGGAACTGTTCAGTTATCAAACTGTGGAGAGAG
TGGAAATGACAATAGGGAAAGAAACTCCTCCTCATCCCTTACAGAAGCAG
AGGCCAGTCATCCAAAGAAAAGAGGAATGGTTCTTCCATTTGAACCTTAT
TCCCTTACCTTTGATGAGGTTGTATACTCCGTTGACATGCCACAGCAAAT
GAAACTTCAAGGAGTTCCTGAAGATAAATTAGTGCTTTTGAATGGTGTGA
GCGGTGCTTTTCGGCCTGGTGTACTAACCGCTTTAATGGGTGTCAGTGGT
GCTGGTAAAACTACTTTGATGGATGTATTGGCTGGCAGGAAAACGGGTGG
ATATATTACTGGGGATATAAGAATATCTGGTTACCCAAAGAAGCAAGAAA
CGTTTGCTCGTATTTCAGGATACTGTGAGCAAAATGACATCCACTCTCCT
TTTGTTACTATATATGAGTCCTTGTTCTATTCGGCCTGGCTACGTTTACC
ACCTGAAGTTAATTCTGAAACCAGAAAGATGTTTATTTGAGGAAGTCATG
GAGCTTGTGGAGCTGAAACCATTGAGACAGTCACT
back to top