FC925239

Overview
NameFC925239
Unique NameFC925239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length585
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: AB19G_ARATH (ABC transporter G family member 19 OS=Arabidopsis thaliana GN=ABCG19 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.761e-14
Identity = 52/164 (31.71%), Postives = 88/164 (53.66%), Query Frame = 1
Query:   43 GESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFAR-ISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKM 531
            G+SG+  +  + +  + + EA + K         PY L F+ + Y V + ++         K  LL+ VSG    G + A++G SGAGK+TL+D LAGR   G + G + ++G    Q    + IS Y  Q+D+  P +T+ E+L +++  RLP  + S+++KM
Sbjct:   43 GDSGDGVKSDDPAHHIIDVEALYVKP-------VPYVLNFNNLQYDVTLRRRFGFSRQNGVK-TLLDDVSGEASDGDILAVLGASGAGKSTLIDALAGRVAEGSLRGSVTLNGEKVLQSRLLKVISAYVMQDDLLFPMLTVKETLMFASEFRLPRSL-SKSKKM 197          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: ABCGC_DICDI (ABC transporter G family member 12 OS=Dictyostelium discoideum GN=abcG12 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.283e-13
Identity = 51/140 (36.43%), Postives = 72/140 (51.43%), Query Frame = 1
Query:  154 LTFDEVVYSVDMPQQMKL---------------------QGVP---EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLP 501
            LTF  +VY VD  +  KL                      GV    E +L +LN VSG    G L ALMG SG+GK+TL+D+LA RK+ G ITG + ++G  +  E + +   Y  Q D+     T++E+L + A L+LP
Sbjct:   22 LTFKNIVYKVDNKKYKKLVKKQEKAKKKNDTESSTGDMNTGVSTTIEKELTILNNVSGVIEKGELVALMGPSGSGKSTLLDILAQRKSTGKITGQLLVNG-KEIGEAYKKYCSYVTQEDVLLQTSTVFETLKFYADLKLP 160          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: ABCG4_DICDI (ABC transporter G family member 4 OS=Dictyostelium discoideum GN=abcG4 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.676e-13
Identity = 41/108 (37.96%), Postives = 65/108 (60.19%), Query Frame = 1
Query:  196 QMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSE 519
            ++ +  + E +L +L+ VSG    G + ALMG SG+GK+TL+D+LA RK+ G ITG I ++G  +  E +     Y  Q ++     T+YE+L + A LRLP   ++E
Sbjct:  222 KLPIDRIIEKELTILSNVSGIVEKGEMVALMGPSGSGKSTLLDILANRKSTGTITGKILVNG-KEIGEAYKMFCSYVTQEEVFLETSTVYETLKFHADLRLPDMTDTE 328          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: AB27G_ARATH (ABC transporter G family member 27 OS=Arabidopsis thaliana GN=ABCG27 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.189e-13
Identity = 44/125 (35.20%), Postives = 72/125 (57.60%), Query Frame = 1
Query:  157 TFDEVVYSVDMPQQMKLQGVPED-KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRK 528
            TF   +  +D+  ++  +G+    +  +LNG+SG+  PG L ALMG SG+GKTTL++ L GR     I G +  +  P  +    RI G+  Q+D+  P +T+ E+L Y+A LRLP  +  + ++
Sbjct:  140 TFPIYLKFIDITYKVTTKGMTSSSEKSILNGISGSAYPGELLALMGPSGSGKTTLLNALGGRFNQQNIGGSVSYNDKPYSKHLKTRI-GFVTQDDVLFPHLTVKETLTYTALLRLPKTLTEQEKE 263          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: AB16G_ARATH (ABC transporter G family member 16 OS=Arabidopsis thaliana GN=ABCG16 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.859e-13
Identity = 42/136 (30.88%), Postives = 75/136 (55.15%), Query Frame = 1
Query:  145 PYSLTFDEVVYSVDMPQQMKLQG-VPEDKL------VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKM 531
            P+ L+F+ + Y+V + +++     VP  +        LL+ +SG  R G + A++G SG+GK+TL+D LA R   G + G + ++G   +      IS Y  Q+D+  P +T+ E+L ++A  RLP  +    +K+
Sbjct:   70 PFVLSFNNLTYNVSVRRKLDFHDLVPWRRTSFSKTKTLLDNISGETRDGEILAVLGASGSGKSTLIDALANRIAKGSLKGTVTLNGEALQSRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSLPKSKKKL 205          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: SCRT_DROME (Protein scarlet OS=Drosophila melanogaster GN=st PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 4.877e-13
Identity = 45/102 (44.12%), Postives = 62/102 (60.78%), Query Frame = 1
Query:  235 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            ++N  +GA +PG L ALMG SG+GKTTLM  LA R+  G  + GDI I+G  +      RISGY  Q+D+    +T+ E L + A LRL   V+ E R++ I
Sbjct:   90 IINNSTGAIQPGTLMALMGSSGSGKTTLMSTLAFRQPAGTVVQGDILING-RRIGPFMHRISGYVYQDDLFLGSLTVLEHLNFMAHLRLDRRVSKEERRLII 190          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: PDR12_YEAST (ATP-dependent permease PDR12 OS=Saccharomyces cerevisiae GN=PDR12 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.419e-12
Identity = 44/101 (43.56%), Postives = 61/101 (60.40%), Query Frame = 1
Query:  235 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            LL+ V G  +PG +TALMG SGAGKTTL++VLA R   G ITGD+ ++  P    +F R  GY  Q D H   +++ ESL ++A LR    V  E +  ++
Sbjct:  860 LLSDVFGYVKPGKMTALMGESGAGKTTLLNVLAQRINMGVITGDMLVNAKP-LPASFNRSCGYVAQADNHMAELSVRESLRFAAELRQQSSVPLEEKYEYV 959          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: PDR11_YEAST (ATP-dependent permease PDR11 OS=Saccharomyces cerevisiae GN=PDR11 PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 3.161e-12
Identity = 41/88 (46.59%), Postives = 54/88 (61.36%), Query Frame = 1
Query:  235 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ-ETFARISGYCEQNDIHSPFVTIYESLFYSAWLR 495
            L+N  SG    G LTALMG SGAGKTTL++VL+ R   G +TG++ I G P    + F R  G+ +Q D+H   +T+ ESL  S  LR
Sbjct:  765 LINDASGYISSG-LTALMGESGAGKTTLLNVLSQRTESGVVTGELLIDGQPLTNIDAFRRSIGFVQQQDVHLELLTVRESLEISCVLR 851          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: AB24G_ARATH (ABC transporter G family member 24 OS=Arabidopsis thaliana GN=ABCG24 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.161e-12
Identity = 35/101 (34.65%), Postives = 65/101 (64.36%), Query Frame = 1
Query:  235 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            +L  V+G+ +PG +TA+MG SGAGKT+L+  LAG+  G  ++G I I+G  +   ++ +I G+  Q+D+    +T+ E+L++ A  RLP +++   + + +
Sbjct:  493 VLRCVTGSMKPGRITAVMGPSGAGKTSLLSALAGKAVGCKLSGLILINGKQESIHSYKKIIGFVPQDDVVHGNLTVEENLWFHAKCRLPADLSKADKVLVV 593          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: AUS1_YEAST (ATP-dependent permease AUS1 OS=Saccharomyces cerevisiae GN=AUS1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.392e-12
Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = 1
Query:  235 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP-KKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLR 495
            L+N  SG    G LTALMG SGAGKTTL++VL+ R   G ++G+I I G+P   ++ F R  G+ +Q D+H   +++ ESL  S  LR
Sbjct:  765 LINNASGFISSG-LTALMGESGAGKTTLLNVLSQRVETGVVSGEILIDGHPLTDEDAFKRSIGFVQQQDLHLDLLSVKESLEISCLLR 851          
The following BLAST results are available for this feature:
BLAST of FC925239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
AB19G_ARATH5.761e-1431.71ABC transporter G family member 19 OS=Arabidopsis ... [more]
ABCGC_DICDI1.283e-1336.43ABC transporter G family member 12 OS=Dictyosteliu... [more]
ABCG4_DICDI1.676e-1337.96ABC transporter G family member 4 OS=Dictyostelium... [more]
AB27G_ARATH2.189e-1335.20ABC transporter G family member 27 OS=Arabidopsis ... [more]
AB16G_ARATH2.859e-1330.88ABC transporter G family member 16 OS=Arabidopsis ... [more]
SCRT_DROME4.877e-1344.12Protein scarlet OS=Drosophila melanogaster GN=st P... [more]
PDR12_YEAST1.419e-1243.56ATP-dependent permease PDR12 OS=Saccharomyces cere... [more]
PDR11_YEAST3.161e-1246.59ATP-dependent permease PDR11 OS=Saccharomyces cere... [more]
AB24G_ARATH3.161e-1234.65ABC transporter G family member 24 OS=Arabidopsis ... [more]
AUS1_YEAST5.392e-1245.45ATP-dependent permease AUS1 OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YE18FM1 TF Citrus clementina cDNA clone KN0AAP3YE18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925239 ID=FC925239; Name=FC925239; organism=Citrus clementina; type=EST; length=585bp
CAAGATAACACATTTGGAGGAACTGTTCAGTTATCAAACTGTGGAGAGAG
TGGAAATGACAATAGGGAAAGAAACTCCTCCTCATCCCTTACAGAAGCAG
AGGCCAGTCATCCAAAGAAAAGAGGAATGGTTCTTCCATTTGAACCTTAT
TCCCTTACCTTTGATGAGGTTGTATACTCCGTTGACATGCCACAGCAAAT
GAAACTTCAAGGAGTTCCTGAAGATAAATTAGTGCTTTTGAATGGTGTGA
GCGGTGCTTTTCGGCCTGGTGTACTAACCGCTTTAATGGGTGTCAGTGGT
GCTGGTAAAACTACTTTGATGGATGTATTGGCTGGCAGGAAAACGGGTGG
ATATATTACTGGGGATATAAGAATATCTGGTTACCCAAAGAAGCAAGAAA
CGTTTGCTCGTATTTCAGGATACTGTGAGCAAAATGACATCCACTCTCCT
TTTGTTACTATATATGAGTCCTTGTTCTATTCGGCCTGGCTACGTTTACC
ACCTGAAGTTAATTCTGAAACCAGAAAGATGTTTATTTGAGGAAGTCATG
GAGCTTGTGGAGCTGAAACCATTGAGACAGTCACT
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