FC925239

Overview
NameFC925239
Unique NameFC925239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length585
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: ABCG2_RAT (ATP-binding cassette sub-family G member 2 OS=Rattus norvegicus GN=Abcg2 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.392e-12
Identity = 42/124 (33.87%), Postives = 73/124 (58.87%), Query Frame = 1
Query:  154 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETR 525
            L+F  + Y V +     ++   E ++  L+ ++G  +PG L A++G +G GK++L+DVLA RK    ++GD+ I+G P +   F   SGY  Q+D+    +T+ E+L +SA LRLP  + +  +
Sbjct:   37 LSFHHITYRVKVKSGFLVRKTAEKEI--LSDINGIMKPG-LNAILGPTGGGKSSLLDVLAARKDPRGLSGDVLINGAP-QPANFKCSSGYVVQDDVVMGTLTVRENLQFSAALRLPKAMKTHEK 156          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: ABCG2_MOUSE (ATP-binding cassette sub-family G member 2 OS=Mus musculus GN=Abcg2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.392e-12
Identity = 42/124 (33.87%), Postives = 73/124 (58.87%), Query Frame = 1
Query:  154 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETR 525
            L+F  + Y V +     ++   E ++  L+ ++G  +PG L A++G +G GK++L+DVLA RK    ++GD+ I+G P+    F   SGY  Q+D+    +T+ E+L +SA LRLP  + +  +
Sbjct:   37 LSFHHITYRVKVKSGFLVRKTVEKEI--LSDINGIMKPG-LNAILGPTGGGKSSLLDVLAARKDPKGLSGDVLINGAPQPAH-FKCCSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMKNHEK 156          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: ABCG2_BOVIN (ATP-binding cassette sub-family G member 2 OS=Bos taurus GN=ABCG2 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.392e-12
Identity = 44/121 (36.36%), Postives = 71/121 (58.68%), Query Frame = 1
Query:  154 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNS 516
            L+F  + Y V +     L     +K +L N ++G  +PG L A++G +G GK++L+D+LA RK    ++GD+ I+G P +   F   SGY  Q+D+    +T+ E+L +SA LRLP  + S
Sbjct:   36 LSFHNICYRVKVKTGFLLCRKTIEKEILAN-INGVMKPG-LNAILGPTGGGKSSLLDILAARKDPHGLSGDVLINGAP-RPANFKCNSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTS 153          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: AB9G_ARATH (ABC transporter G family member 9 OS=Arabidopsis thaliana GN=ABCG9 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.392e-12
Identity = 41/123 (33.33%), Postives = 72/123 (58.54%), Query Frame = 1
Query:  145 PYSLTFDEVVYSVDMPQQMKLQGVPE--DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLP 501
            P +L F+ +VY+V +       G  +  ++  +L G++G  +PG + A++G SG+GKT+L+  L GR  +  G +TG+I  +  P   +   R +G+  Q+D   P +T+ E+L ++A LRLP
Sbjct:   34 PVTLKFENLVYTVKLKDSQGCFGKNDKTEERTILKGLTGIVKPGEILAMLGPSGSGKTSLLTALGGRVGEGKGKLTGNISYNNKP-LSKAVKRTTGFVTQDDALYPNLTVTETLVFTALLRLP 155          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: AB25G_ARATH (ABC transporter G family member 25 OS=Arabidopsis thaliana GN=ABCG25 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.392e-12
Identity = 45/143 (31.47%), Postives = 78/143 (54.55%), Query Frame = 1
Query:  145 PYSLTFDEVVYSV----------DMPQQMKLQGVPEDKL------VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETR 525
            P +L F +V Y V          ++ + + L+  P D+        +L+GV+G   PG   A++G SG+GK+TL++ +AGR  G  +TG I I+     ++T  R +G+  Q+D+  P +T+ E+L + A LRLP  +  + +
Sbjct:   37 PITLKFVDVCYRVKIHGMSNDSCNIKKLLGLKQKPSDETRSTEERTILSGVTGMISPGEFMAVLGPSGSGKSTLLNAVAGRLHGSNLTGKILINDGKITKQTLKR-TGFVAQDDLLYPHLTVRETLVFVALLRLPRSLTRDVK 178          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: AB13G_ARATH (ABC transporter G family member 13 OS=Arabidopsis thaliana GN=ABCG13 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.392e-12
Identity = 40/96 (41.67%), Postives = 59/96 (61.46%), Query Frame = 1
Query:  235 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-TGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSE 519
            LLNGV+G   P  + A+MG SG+GK+TL+D LAGR  G  + +G + ++G  KK+      + Y  Q D+    +T+ ES+ YSA LRLP ++  E
Sbjct:   30 LLNGVNGCGEPNRILAIMGPSGSGKSTLLDALAGRLAGNVVMSGKVLVNG--KKRRLDFGAAAYVTQEDVLLGTLTVRESISYSAHLRLPSKLTRE 123          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: ABCG8_DICDI (ABC transporter G family member 8 OS=Dictyostelium discoideum GN=abcG8 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.198e-12
Identity = 38/100 (38.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:  202 KLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLP 501
            K +   E ++ +L  V G    G L ALMG SG+GK+TL+D+LA RK+ G ITG + ++G  +  E + +   Y  Q D+     T++E+L + A L+LP
Sbjct:   61 KTENSNEKEITILYNVGGVIEKGELVALMGPSGSGKSTLLDILAQRKSTGKITGQLLVNG-KEIGEAYKKYCSYVTQEDVLLQTYTVFETLKFYADLKLP 159          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: ABCG2_PIG (ATP-binding cassette sub-family G member 2 OS=Sus scrofa GN=ABCG2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.198e-12
Identity = 43/124 (34.68%), Postives = 72/124 (58.06%), Query Frame = 1
Query:  154 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETR 525
            L+F ++ Y V +           +K +L N ++G  +PG L A++G +G GK++L+DVLA RK    ++GD+ I+G P +   F   SGY  Q+D+    +T+ E+L +SA LRLP  + +  +
Sbjct:   37 LSFHDICYRVKVKSGFLFCRKTVEKEILTN-INGIMKPG-LNAILGPTGGGKSSLLDVLAARKDPHGLSGDVLINGAP-RPANFKCNSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTNHEK 157          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: ABCG7_DICDI (ABC transporter G family member 7 OS=Dictyostelium discoideum GN=abcG7 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.201e-11
Identity = 51/161 (31.68%), Postives = 85/161 (52.80%), Query Frame = 1
Query:   25 VQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMK--LQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLP 501
            ++ SN   S +     +S+S L   + S    R  +LP    SL   ++  S++ PQQ +    G  E ++ +L+ VSG      +  L G SG+GK+TL+D+LA RK+ G I+G I ++G  +  + + +   Y  Q++I     T+ E+L + A LRLP
Sbjct:  191 MERSNSSNSNSSYDVESSASGLQTPQQS----RSSILPTN--SLNISKIDQSMN-PQQTRSTTNGKIEKEITILSNVSGIIEKSEMVGLFGPSGSGKSTLLDILANRKSTGTISGKILVNG-KEIGDAYKKYCSYVTQDEILLQTSTVEETLKFHADLRLP 343          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: ABCG4_HUMAN (ATP-binding cassette sub-family G member 4 OS=Homo sapiens GN=ABCG4 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.201e-11
Identity = 50/138 (36.23%), Postives = 76/138 (55.07%), Query Frame = 1
Query:   88 LTEAEA-SHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRL 498
            +TEA+  SH  KR  V       + F E+ YSV      + +G       LL  +SG F    L  +MG SGAGK+T M++LAG +  G + G I ++G P++  TF ++S Y  Q+D+  P +T+ E++  SA L+L
Sbjct:   44 ITEAQRFSHLPKRSAV------DIEFVELSYSVREGPCWRKRGYK----TLLKCLSGKFCRRELIGIMGPSGAGKSTFMNILAGYRESG-MKGQILVNGRPRELRTFRKMSCYIMQDDMLLPHLTVLEAMMVSANLKL 170          
The following BLAST results are available for this feature:
BLAST of FC925239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
ABCG2_RAT5.392e-1233.87ATP-binding cassette sub-family G member 2 OS=Ratt... [more]
ABCG2_MOUSE5.392e-1233.87ATP-binding cassette sub-family G member 2 OS=Mus ... [more]
ABCG2_BOVIN5.392e-1236.36ATP-binding cassette sub-family G member 2 OS=Bos ... [more]
AB9G_ARATH5.392e-1233.33ABC transporter G family member 9 OS=Arabidopsis t... [more]
AB25G_ARATH5.392e-1231.47ABC transporter G family member 25 OS=Arabidopsis ... [more]
AB13G_ARATH5.392e-1241.67ABC transporter G family member 13 OS=Arabidopsis ... [more]
ABCG8_DICDI9.198e-1238.00ABC transporter G family member 8 OS=Dictyostelium... [more]
ABCG2_PIG9.198e-1234.68ATP-binding cassette sub-family G member 2 OS=Sus ... [more]
ABCG7_DICDI1.201e-1131.68ABC transporter G family member 7 OS=Dictyostelium... [more]
ABCG4_HUMAN1.201e-1136.23ATP-binding cassette sub-family G member 4 OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YE18FM1 TF Citrus clementina cDNA clone KN0AAP3YE18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925239 ID=FC925239; Name=FC925239; organism=Citrus clementina; type=EST; length=585bp
CAAGATAACACATTTGGAGGAACTGTTCAGTTATCAAACTGTGGAGAGAG
TGGAAATGACAATAGGGAAAGAAACTCCTCCTCATCCCTTACAGAAGCAG
AGGCCAGTCATCCAAAGAAAAGAGGAATGGTTCTTCCATTTGAACCTTAT
TCCCTTACCTTTGATGAGGTTGTATACTCCGTTGACATGCCACAGCAAAT
GAAACTTCAAGGAGTTCCTGAAGATAAATTAGTGCTTTTGAATGGTGTGA
GCGGTGCTTTTCGGCCTGGTGTACTAACCGCTTTAATGGGTGTCAGTGGT
GCTGGTAAAACTACTTTGATGGATGTATTGGCTGGCAGGAAAACGGGTGG
ATATATTACTGGGGATATAAGAATATCTGGTTACCCAAAGAAGCAAGAAA
CGTTTGCTCGTATTTCAGGATACTGTGAGCAAAATGACATCCACTCTCCT
TTTGTTACTATATATGAGTCCTTGTTCTATTCGGCCTGGCTACGTTTACC
ACCTGAAGTTAATTCTGAAACCAGAAAGATGTTTATTTGAGGAAGTCATG
GAGCTTGTGGAGCTGAAACCATTGAGACAGTCACT
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