FC925239
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: ABCG2_RAT (ATP-binding cassette sub-family G member 2 OS=Rattus norvegicus GN=Abcg2 PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 5.392e-12 Identity = 42/124 (33.87%), Postives = 73/124 (58.87%), Query Frame = 1 Query: 154 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETR 525 L+F + Y V + ++ E ++ L+ ++G +PG L A++G +G GK++L+DVLA RK ++GD+ I+G P + F SGY Q+D+ +T+ E+L +SA LRLP + + + Sbjct: 37 LSFHHITYRVKVKSGFLVRKTAEKEI--LSDINGIMKPG-LNAILGPTGGGKSSLLDVLAARKDPRGLSGDVLINGAP-QPANFKCSSGYVVQDDVVMGTLTVRENLQFSAALRLPKAMKTHEK 156
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: ABCG2_MOUSE (ATP-binding cassette sub-family G member 2 OS=Mus musculus GN=Abcg2 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 5.392e-12 Identity = 42/124 (33.87%), Postives = 73/124 (58.87%), Query Frame = 1 Query: 154 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETR 525 L+F + Y V + ++ E ++ L+ ++G +PG L A++G +G GK++L+DVLA RK ++GD+ I+G P+ F SGY Q+D+ +T+ E+L +SA LRLP + + + Sbjct: 37 LSFHHITYRVKVKSGFLVRKTVEKEI--LSDINGIMKPG-LNAILGPTGGGKSSLLDVLAARKDPKGLSGDVLINGAPQPAH-FKCCSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMKNHEK 156
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: ABCG2_BOVIN (ATP-binding cassette sub-family G member 2 OS=Bos taurus GN=ABCG2 PE=3 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 5.392e-12 Identity = 44/121 (36.36%), Postives = 71/121 (58.68%), Query Frame = 1 Query: 154 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNS 516 L+F + Y V + L +K +L N ++G +PG L A++G +G GK++L+D+LA RK ++GD+ I+G P + F SGY Q+D+ +T+ E+L +SA LRLP + S Sbjct: 36 LSFHNICYRVKVKTGFLLCRKTIEKEILAN-INGVMKPG-LNAILGPTGGGKSSLLDILAARKDPHGLSGDVLINGAP-RPANFKCNSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTS 153
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: AB9G_ARATH (ABC transporter G family member 9 OS=Arabidopsis thaliana GN=ABCG9 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 5.392e-12 Identity = 41/123 (33.33%), Postives = 72/123 (58.54%), Query Frame = 1 Query: 145 PYSLTFDEVVYSVDMPQQMKLQGVPE--DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLP 501 P +L F+ +VY+V + G + ++ +L G++G +PG + A++G SG+GKT+L+ L GR + G +TG+I + P + R +G+ Q+D P +T+ E+L ++A LRLP Sbjct: 34 PVTLKFENLVYTVKLKDSQGCFGKNDKTEERTILKGLTGIVKPGEILAMLGPSGSGKTSLLTALGGRVGEGKGKLTGNISYNNKP-LSKAVKRTTGFVTQDDALYPNLTVTETLVFTALLRLP 155
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: AB25G_ARATH (ABC transporter G family member 25 OS=Arabidopsis thaliana GN=ABCG25 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 5.392e-12 Identity = 45/143 (31.47%), Postives = 78/143 (54.55%), Query Frame = 1 Query: 145 PYSLTFDEVVYSV----------DMPQQMKLQGVPEDKL------VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETR 525 P +L F +V Y V ++ + + L+ P D+ +L+GV+G PG A++G SG+GK+TL++ +AGR G +TG I I+ ++T R +G+ Q+D+ P +T+ E+L + A LRLP + + + Sbjct: 37 PITLKFVDVCYRVKIHGMSNDSCNIKKLLGLKQKPSDETRSTEERTILSGVTGMISPGEFMAVLGPSGSGKSTLLNAVAGRLHGSNLTGKILINDGKITKQTLKR-TGFVAQDDLLYPHLTVRETLVFVALLRLPRSLTRDVK 178
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: AB13G_ARATH (ABC transporter G family member 13 OS=Arabidopsis thaliana GN=ABCG13 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 5.392e-12 Identity = 40/96 (41.67%), Postives = 59/96 (61.46%), Query Frame = 1 Query: 235 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-TGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSE 519 LLNGV+G P + A+MG SG+GK+TL+D LAGR G + +G + ++G KK+ + Y Q D+ +T+ ES+ YSA LRLP ++ E Sbjct: 30 LLNGVNGCGEPNRILAIMGPSGSGKSTLLDALAGRLAGNVVMSGKVLVNG--KKRRLDFGAAAYVTQEDVLLGTLTVRESISYSAHLRLPSKLTRE 123
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: ABCG8_DICDI (ABC transporter G family member 8 OS=Dictyostelium discoideum GN=abcG8 PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 9.198e-12 Identity = 38/100 (38.00%), Postives = 59/100 (59.00%), Query Frame = 1 Query: 202 KLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLP 501 K + E ++ +L V G G L ALMG SG+GK+TL+D+LA RK+ G ITG + ++G + E + + Y Q D+ T++E+L + A L+LP Sbjct: 61 KTENSNEKEITILYNVGGVIEKGELVALMGPSGSGKSTLLDILAQRKSTGKITGQLLVNG-KEIGEAYKKYCSYVTQEDVLLQTYTVFETLKFYADLKLP 159
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: ABCG2_PIG (ATP-binding cassette sub-family G member 2 OS=Sus scrofa GN=ABCG2 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 9.198e-12 Identity = 43/124 (34.68%), Postives = 72/124 (58.06%), Query Frame = 1 Query: 154 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETR 525 L+F ++ Y V + +K +L N ++G +PG L A++G +G GK++L+DVLA RK ++GD+ I+G P + F SGY Q+D+ +T+ E+L +SA LRLP + + + Sbjct: 37 LSFHDICYRVKVKSGFLFCRKTVEKEILTN-INGIMKPG-LNAILGPTGGGKSSLLDVLAARKDPHGLSGDVLINGAP-RPANFKCNSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTNHEK 157
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: ABCG7_DICDI (ABC transporter G family member 7 OS=Dictyostelium discoideum GN=abcG7 PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.201e-11 Identity = 51/161 (31.68%), Postives = 85/161 (52.80%), Query Frame = 1 Query: 25 VQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMK--LQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLP 501 ++ SN S + +S+S L + S R +LP SL ++ S++ PQQ + G E ++ +L+ VSG + L G SG+GK+TL+D+LA RK+ G I+G I ++G + + + + Y Q++I T+ E+L + A LRLP Sbjct: 191 MERSNSSNSNSSYDVESSASGLQTPQQS----RSSILPTN--SLNISKIDQSMN-PQQTRSTTNGKIEKEITILSNVSGIIEKSEMVGLFGPSGSGKSTLLDILANRKSTGTISGKILVNG-KEIGDAYKKYCSYVTQDEILLQTSTVEETLKFHADLRLP 343
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: ABCG4_HUMAN (ATP-binding cassette sub-family G member 4 OS=Homo sapiens GN=ABCG4 PE=2 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 1.201e-11 Identity = 50/138 (36.23%), Postives = 76/138 (55.07%), Query Frame = 1 Query: 88 LTEAEA-SHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRL 498 +TEA+ SH KR V + F E+ YSV + +G LL +SG F L +MG SGAGK+T M++LAG + G + G I ++G P++ TF ++S Y Q+D+ P +T+ E++ SA L+L Sbjct: 44 ITEAQRFSHLPKRSAV------DIEFVELSYSVREGPCWRKRGYK----TLLKCLSGKFCRRELIGIMGPSGAGKSTFMNILAGYRESG-MKGQILVNGRPRELRTFRKMSCYIMQDDMLLPHLTVLEAMMVSANLKL 170 The following BLAST results are available for this feature:
BLAST of FC925239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 98
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Sequences
The
following sequences are available for this feature:
EST sequence >FC925239 ID=FC925239; Name=FC925239; organism=Citrus clementina; type=EST; length=585bpback to top |