FC925244

Overview
NameFC925244
Unique NameFC925244
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925244 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSI (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. indica GN=CSLD2 PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.960e-55
Identity = 97/190 (51.05%), Postives = 137/190 (72.11%), Query Frame = 3
Query:  150 RLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDDDGD--FAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKG 713
            ++K L+R+AY+N  +YP TSI LI YC LPA  L + +FI+  ++     + +++ +++    +LEI+WSG+ +E+WWRNEQFW+IGGTSAHL AV QGLLKV+AGI+ +FT+TSK+  D+ D  FA+LY+ KWTSL+IPP  +++VNL+ I  G S  I S    W  L G +FF+ WV+AHLYPF KG
Sbjct:  935 KMKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVRTLNVTFLTYLLVITLTMCMLAVLEIKWSGISLEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDEADDEFADLYIVKWTSLMIPPIVIMMVNLIAIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKG 1124          
BLAST of FC925244 vs. ExPASy Swiss-Prot
Match: CSLD6_ARATH (Putative cellulose synthase-like protein D6 OS=Arabidopsis thaliana GN=CSLD6 PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.703e-55
Identity = 92/192 (47.92%), Postives = 139/192 (72.40%), Query Frame = 3
Query:  150 RLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKAS----DDDGDFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKG 713
            +LKLL+R+AY+N  +YP TSI ++ YC LP   L +  F++  ++    ++ +++ +S+    +LE++WSG+ +E+WWRNEQFW+IGGTSAHL AV QG+LKV+AG++ +FT+TSK+S    D+D +FA+LY+FKWT+L+IPP T++I+N+V I+  V   + S    W  L G  FFA WV+ H+YPF KG
Sbjct:  745 KLKLLQRIAYLNVGIYPFTSIFILTYCFLPPLSLFSGHFVVETLTGSFLIYLLIITLSLCGLAVLEVKWSGISLEEWWRNEQFWLIGGTSAHLVAVLQGILKVIAGVEISFTLTSKSSTGGDDEDDEFADLYLFKWTALMIPPLTIIILNIVAILFAVCRTVFSANPQWSNLLGGTFFASWVLLHMYPFAKG 936          
BLAST of FC925244 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSJ (Cellulose synthase-like protein D5 OS=Oryza sativa subsp. japonica GN=CSLD5 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.703e-55
Identity = 99/190 (52.11%), Postives = 136/190 (71.58%), Query Frame = 3
Query:  150 RLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKAS--DDDGDFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKG 713
            RLK L+R+AY+N  +YP TS+ LI YC LPA  L + +FI+  +      + +L+ I++    +LE++WSG+G+E+WWRNEQFWVIGGTSAHL AV QGLLKV+AGI+ +FT+T+KA+  DDD  FAELY+ KWTSL IPP  V+ +N++ +V GVS  + +    +  L G  FF+ WV+AH YPF KG
Sbjct:  779 RLKFLQRMAYLNVGIYPFTSLFLIMYCLLPALSLFSGQFIVATLDPTFLSYLLLITITLMLLCLLEVKWSGIGLEEWWRNEQFWVIGGTSAHLAAVLQGLLKVVAGIEISFTLTAKAAAEDDDDPFAELYLIKWTSLFIPPLAVIGINIIALVVGVSRTVYAEIPQYSKLLGGGFFSFWVLAHYYPFAKG 968          
BLAST of FC925244 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSI (Putative cellulose synthase-like protein D5 OS=Oryza sativa subsp. indica GN=CSLD5 PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.703e-55
Identity = 99/190 (52.11%), Postives = 136/190 (71.58%), Query Frame = 3
Query:  150 RLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKAS--DDDGDFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKG 713
            RLK L+R+AY+N  +YP TS+ LI YC LPA  L + +FI+  +      + +L+ I++    +LE++WSG+G+E+WWRNEQFWVIGGTSAHL AV QGLLKV+AGI+ +FT+T+KA+  DDD  FAELY+ KWTSL IPP  V+ +N++ +V GVS  + +    +  L G  FF+ WV+AH YPF KG
Sbjct:  779 RLKFLQRMAYLNVGIYPFTSLFLIMYCLLPALSLFSGQFIVATLDPTFLSYLLLITITLMLLCLLEVKWSGIGLEEWWRNEQFWVIGGTSAHLAAVLQGLLKVVAGIEISFTLTAKAAAEDDDDPFAELYLIKWTSLFIPPLAVIGINIIALVVGVSRTVYAEIPQYSKLLGGGFFSFWVLAHYYPFAKG 968          
BLAST of FC925244 vs. ExPASy Swiss-Prot
Match: CSLD4_ARATH (Cellulose synthase-like protein D4 OS=Arabidopsis thaliana GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.076e-53
Identity = 92/190 (48.42%), Postives = 135/190 (71.05%), Query Frame = 3
Query:  150 RLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDDDGD--FAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKG 713
            RLK L+RLAY+N  +YP TS+ LI YC LPAF L + +FI+  +S    ++ +++ I +    +LE++WSG+G+E+WWRNEQ+W+I GTS+HL+AV QG+LKV+AGI+ +FT+T+K+  DD +  +A+LY+ KW+SL+IPP  + +VN++ IV      I      W  L G  FF+ WV+AHLYPF KG
Sbjct:  871 RLKFLQRLAYLNVGIYPFTSLFLILYCFLPAFSLFSGQFIVRTLSISFLVYLLMITICLIGLAVLEVKWSGIGLEEWWRNEQWWLISGTSSHLYAVVQGVLKVIAGIEISFTLTTKSGGDDNEDIYADLYIVKWSSLMIPPIVIAMVNIIAIVVAFIRTIYQAVPQWSKLIGGAFFSFWVLAHLYPFAKG 1060          
BLAST of FC925244 vs. ExPASy Swiss-Prot
Match: CSLD5_ARATH (Cellulose synthase-like protein D5 OS=Arabidopsis thaliana GN=CSLD5 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.087e-53
Identity = 92/191 (48.17%), Postives = 135/191 (70.68%), Query Frame = 3
Query:  150 RLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKAS---DDDGDFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKG 713
            R+K L+R+AY N  +YP TS+ LI YC LPA  L + +FI+  +     ++ + + +++    +LEI+WSG+ + +WWRNEQFWVIGGTSAH  AV QGLLKV+AG+D +FT+TSK+S   D D +FA+LYV KW+ L++PP T+++VN++ I  G++  + S +  W  L G +FF+ WV+ HLYPF KG
Sbjct:  946 RMKFLQRVAYFNVGMYPFTSLFLIVYCILPAISLFSGQFIVQSLDITFLIYLLSITLTLCMLSLLEIKWSGITLHEWWRNEQFWVIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKSSAPEDGDDEFADLYVVKWSFLMVPPLTIMMVNMIAIAVGLARTLYSPFPQWSKLVGGVFFSFWVLCHLYPFAKG 1136          
BLAST of FC925244 vs. ExPASy Swiss-Prot
Match: CSLD3_ORYSJ (Cellulose synthase-like protein D3 OS=Oryza sativa subsp. japonica GN=CSLD3 PE=2 SV=2)

HSP 1 Score: 204.912 bits (520), Expect = 3.460e-52
Identity = 94/190 (49.47%), Postives = 135/190 (71.05%), Query Frame = 3
Query:  150 RLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDDDGD--FAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKG 713
            +L LL+R++Y+N  +YP TSI L+ YC +PA  L +  FI+ ++      + + + I++ A GILE++WSG+ +EDWWRNEQFW+I GTSAHL+AV QGLLKV+AGI+ +FT+T+KA+ DD +  +A+LY+ KW+SLLIPP T+ +VN++ I    +  I S    WG   G  FF+ WV+AHL PF KG
Sbjct:  909 KLMLLQRISYLNVGIYPFTSIFLLVYCFIPALSLFSGFFIVQKLDIAFLCYLLTMTITLVALGILEVKWSGIELEDWWRNEQFWLISGTSAHLYAVVQGLLKVMAGIEISFTLTAKAAADDNEDIYADLYIVKWSSLLIPPITIGMVNIIAIAFAFARTIYSDNPRWGKFIGGGFFSFWVLAHLNPFAKG 1098          
BLAST of FC925244 vs. ExPASy Swiss-Prot
Match: CSLD4_ORYSJ (Cellulose synthase-like protein D4 OS=Oryza sativa subsp. japonica GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.929e-51
Identity = 93/200 (46.50%), Postives = 131/200 (65.50%), Query Frame = 3
Query:  150 RLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDDDGD------------FAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKG 713
            R+KLL+R+AY N  +YP TS+ L+AYC LPA  L + KFI+  +S     + +++ +++    +LEI+WSG+ + +WWRNEQFWVIGGTSAH  AV QGLLKV+AG+D +FT+TSK  +  GD            FAELY  +W+ L++PP T+++VN V I    +  + S +  W  L G  FF+ WV+ HLYPF KG
Sbjct:  968 RMKLLQRVAYFNAGMYPFTSVFLLAYCLLPAVSLFSGKFIVQRLSATFLAFLLVITLTLCLLALLEIKWSGITLHEWWRNEQFWVIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKPGNGGGDGGVGGEGNDDEAFAELYEVRWSYLMVPPVTIMMVNAVAIAVAAARTLYSEFPQWSKLLGGAFFSFWVLCHLYPFAKG 1167          
BLAST of FC925244 vs. ExPASy Swiss-Prot
Match: CESAB_ORYSJ (Putative cellulose synthase A catalytic subunit 11 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA11 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.318e-43
Identity = 94/209 (44.98%), Postives = 128/209 (61.24%), Query Frame = 3
Query:  129 LWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIP-EISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKAS--------DDDGD----FAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSG-YQSWGPLFGKLFFAIWVIAHLYPFLKG 713
            +W G   RL LL+RL Y+    YPL S+PL  YC LPA CLLT K   P ++S +  +  ILL  S+ A+  LE+RWS V +  WWR+E+ W++  TSA L AVFQG+L    GID  F+  + AS        +DDG+     A     +WT+LL+ PT+V++ NL G+VA V++ ++ G YQSWG L  KL  A WV+AHL  FL+G
Sbjct:  606 VWAGR--RLGLLQRLGYVARASYPLASLPLTVYCALPAVCLLTGKSTFPSDVSYYDGVLLILLLFSVAASVALELRWSRVPLRAWWRDEKLWMVTATSASLAAVFQGILSACTGIDVAFSTETAASPPKRPAAGNDDGEEEAALASEITMRWTNLLVAPTSVVVANLAGVVAAVAYGVDHGYYQSWGALGAKLALAGWVVAHLQGFLRG 812          
BLAST of FC925244 vs. ExPASy Swiss-Prot
Match: CSLF6_ORYSJ (Probable mixed-linked glucan synthase 6 OS=Oryza sativa subsp. japonica GN=CSLF6 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.253e-34
Identity = 70/187 (37.43%), Postives = 114/187 (60.96%), Query Frame = 3
Query:  162 LERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSK--ASDDDGD-FAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKG 713
            L+R+AYIN   YP T++ LI Y T+PA   +T  FI+   +    ++  ++  ++    +LE++W+GV + +W+RN QFW+    SA+L AV Q + KV+   D +F +TSK  A D+  D +A+LYV +WT L+I P  +++VN++G     +  ++  +  W  + G +FF  WV+ HLYPF KG
Sbjct:  702 LQRVAYINITTYPFTALFLIFYTTVPALSFVTGHFIVQRPTTMFYVYLAIVLGTLLILAVLEVKWAGVTVFEWFRNGQFWMTASCSAYLAAVLQVVTKVVFRRDISFKLTSKLPAGDEKKDPYADLYVVRWTWLMITPIIIILVNIIGSAVAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKG 888          
The following BLAST results are available for this feature:
BLAST of FC925244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CSLD2_ORYSI1.960e-5551.05Cellulose synthase-like protein D2 OS=Oryza sativa... [more]
CSLD6_ARATH5.703e-5547.92Putative cellulose synthase-like protein D6 OS=Ara... [more]
CSLD5_ORYSJ5.703e-5552.11Cellulose synthase-like protein D5 OS=Oryza sativa... [more]
CSLD5_ORYSI5.703e-5552.11Putative cellulose synthase-like protein D5 OS=Ory... [more]
CSLD4_ARATH1.076e-5348.42Cellulose synthase-like protein D4 OS=Arabidopsis ... [more]
CSLD5_ARATH4.087e-5348.17Cellulose synthase-like protein D5 OS=Arabidopsis ... [more]
CSLD3_ORYSJ3.460e-5249.47Cellulose synthase-like protein D3 OS=Oryza sativa... [more]
CSLD4_ORYSJ2.929e-5146.50Cellulose synthase-like protein D4 OS=Oryza sativa... [more]
CESAB_ORYSJ1.318e-4344.98Putative cellulose synthase A catalytic subunit 11... [more]
CSLF6_ORYSJ3.253e-3437.43Probable mixed-linked glucan synthase 6 OS=Oryza s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YG01FM1 TF Citrus clementina cDNA clone KN0AAP8YG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925244 ID=FC925244; Name=FC925244; organism=Citrus clementina; type=EST; length=715bp
GCTACCTTCATGGAACAGGGAGGCATTCCACCGACAACTAATCCTGCAAG
TCTTCTAAAGGAAGCAATCCATGTTATTAGTTGTGGTTATGAGGACAAGA
CTGAATGGGGCAAAGAGATTGGATGGATCTATGGTATGGCTACAATGGGA
GATTGAAGCTTTTGGAGAGACTGGCGTACATTAACACTATTGTCTACCCA
CTGACCTCCATCCCACTAATTGCTTACTGCACGCTTCCTGCTTTTTGCCT
TCTTACTAATAAATTCATCATTCCAGAGATAAGCAACTTTGCTAGCATGT
GGTTTATTCTACTTTTCATTTCCATTTTTGCTACTGGAATACTGGAGATT
AGATGGAGTGGGGTTGGTATTGAGGACTGGTGGAGGAATGAACAGTTCTG
GGTCATTGGTGGAACATCAGCACATCTATTTGCTGTTTTCCAAGGTCTCT
TGAAAGTGCTTGCTGGGATTGATACCAACTTTACTGTCACTTCAAAGGCT
TCTGATGATGATGGAGATTTTGCAGAGCTTTATGTATTCAAATGGACATC
TCTTCTCATCCCTCCAACTACAGTCCTGATTGTGAACTTGGTGGGTATTG
TAGCTGGTGTATCATGGGCCATAAACAGTGGTTACCAATCATGGGGTCCA
CTCTTTGGCAAGCTATTCTTTGCCATATGGGTCATTGCCCATCTGTATCC
TTTCCTGAAGGGTCT
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