FC925244

Overview
NameFC925244
Unique NameFC925244
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925244 vs. ExPASy Swiss-Prot
Match: CSLF7_ORYSJ (Probable mixed-linked glucan synthase 7 OS=Oryza sativa subsp. japonica GN=CSLF7 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.578e-31
Identity = 81/212 (38.21%), Postives = 113/212 (53.30%), Query Frame = 3
Query:  138 GYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLT-----NKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSK--------ASDDDGDFAELYVFKWTSLLIPPTTVLIVNLVGIVA---GVSW----AINSGYQSWGPLFGKLFFAIWVIAHLYPFLKG 713
            G   RL  L+R AY+NT VYP TS+ L+AYC  PA  L+      N    P    F +     L +++ A  +LE RWSG+ + +WWRNEQFW++  TSA+L AV Q  LKV  G + +F +TSK         +  D  +AELY  +WT+L+ P    L VN+  + A   G  W    A ++   +   L   + F +WV+ HLYPF  G
Sbjct:  589 GGRRRLHPLQRAAYLNTTVYPFTSLFLMAYCLFPAIPLIAGGGGWNAAPTPTYVAFLAA----LMVTLAAVAVLETRWSGIALGEWWRNEQFWMVSATSAYLAAVAQVALKVATGKEISFKLTSKHLASSATPVAGKDRQYAELYAVRWTALMAPTAAALAVNVASMAAAGGGGRWWWWDAPSAAAAAAAAL--PVAFNVWVVVHLYPFALG 794          
BLAST of FC925244 vs. ExPASy Swiss-Prot
Match: CSLF4_ORYSJ (Mixed-linked glucan synthase 4 OS=Oryza sativa subsp. japonica GN=CSLF4 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.259e-26
Identity = 66/194 (34.02%), Postives = 106/194 (54.64%), Query Frame = 3
Query:  150 RLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSK-ASDDDGD-FAELYVFKWTSLLIPPTTVLIVNL--VGIVAG--VSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKG 713
            RL  L+R+AY+N   YP+ ++ +  Y   P   L++ ++ I +      ++ + +   I   G+ E++WSG+ + DW RNEQF++IG T  +  AV    LK+  G   +F +TSK  +   GD FA+LY  +W  LLIP   VL VN+  VG+  G   +W + +    +  L   + F +W++A LYPF  G
Sbjct:  650 RLHPLQRIAYLNMSTYPIVTVFIFFYNLFPVMWLISEQYYIQQPFGEYLLYLVAIIAMIHVIGMFEVKWSGITVLDWCRNEQFYMIGSTGVYPTAVLYMALKLFTGKGIHFRLTSKQTTASSGDKFADLYTVRWVPLLIPTIVVLAVNVGAVGVAVGKAAAWGLLTEQGRFAVL--GMVFNVWILALLYPFALG 841          
BLAST of FC925244 vs. ExPASy Swiss-Prot
Match: CSLF1_ORYSJ (Putative mixed-linked glucan synthase 1 OS=Oryza sativa subsp. japonica GN=CSFL1 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.239e-25
Identity = 62/197 (31.47%), Postives = 102/197 (51.78%), Query Frame = 3
Query:  150 RLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSK--ASDDDGDFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGK-------LFFAIWVIAHLYPFLKG 713
            RL  L+R+AY+N   YP+ ++ +  Y   P   L++ ++ I        ++ + +   I   G+ E++W+G+ + DW RNEQF++IG T  +  AV    LK++ G    F +TSK  A+     FA+LY  +W  LLIP   +++VN+  +   V  A      +WGPL          + F +W++  LYPF  G
Sbjct:  611 RLHPLQRVAYLNMSTYPIVTVFIFFYNLFPVMWLISEQYYIQRPFGEYLLYLVAVIAMIHVIGMFEVKWAGITLLDWCRNEQFYMIGSTGVYPTAVLYMALKLVTGKGIYFRLTSKQTAASSGDKFADLYTVRWVPLLIPTIVIMVVNVAAVGVAVGKA-----AAWGPLTEPGWLAVLGMVFNVWILVLLYPFALG 802          
BLAST of FC925244 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSI (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. indica GN=CSLF3 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.114e-25
Identity = 67/207 (32.37%), Postives = 117/207 (56.52%), Query Frame = 3
Query:  123 MDLWYGYNG------RLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSK--ASDDDGDFAELYVFKWTSLLIPPTTVLIVNL--VGIVAG---VSWAINSGYQSWGPLFGKLFFAIWVIAHLYPF 704
            +++++ +N       RL+ L+R++Y+N  +YP+TS+ ++ Y   P   L+ ++  I        ++ +++ + I   G LEI+W+G+   D+WRNEQF++IG TSA+  AV   ++ +L     +F VTSK   +D +  FA+LY  +W  +LIP   VL+ N+  +G+  G   V   + +  Q    + G L F +WV+  LYPF
Sbjct:  620 LEMFFSHNNPLIGGRRLQPLQRVSYLNMTIYPVTSLFILLYAISPVMWLIPDEVYIQRPFTRYVVYLLMIILMIHMIGWLEIKWAGITWLDYWRNEQFFMIGSTSAYPTAVLHMVVNLLTKKGIHFRVTSKQTTADTNDKFADLYEMRWVPMLIPTMVVLVANIGAIGVAIGKMAVYMGVWTIAQKRHAIMG-LLFNMWVMFLLYPF 825          
BLAST of FC925244 vs. ExPASy Swiss-Prot
Match: CSLF2_ORYSJ (Mixed-linked glucan synthase 2 OS=Oryza sativa subsp. japonica GN=CSLF2 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.114e-25
Identity = 63/197 (31.98%), Postives = 103/197 (52.28%), Query Frame = 3
Query:  150 RLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSK-ASDDDGD-FAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGK-------LFFAIWVIAHLYPFLKG 713
            RL  L+R+AY+N   YP+ ++ +  Y   P   L++ ++ I        ++ + +   I   G+ E++W+G+ + DW RNEQF++IG T  +  AV    LK++ G    F +TSK  +   GD FA+LY  +W  LLIP   +++VN+  +   V  A      +WGPL          + F +W++  LYPF  G
Sbjct:  641 RLHPLQRVAYLNMSTYPIVTVFIFFYNLFPVMWLISEQYYIQRPFGEYLLYLVAVIAMIHVIGMFEVKWAGITLLDWCRNEQFYMIGSTGVYPTAVLYMALKLVTGKGIYFRLTSKQTTASSGDKFADLYTVRWVPLLIPTIVIIVVNVAAVGVAVGKA-----AAWGPLTEPGWLAVLGMVFNVWILVLLYPFALG 832          
BLAST of FC925244 vs. ExPASy Swiss-Prot
Match: CSLF8_ORYSJ (Probable mixed-linked glucan synthase 8 OS=Oryza sativa subsp. japonica GN=CSFL8 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.761e-25
Identity = 64/192 (33.33%), Postives = 99/192 (51.56%), Query Frame = 3
Query:  150 RLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKV--LAGIDTNFTVTSKASDDDGDFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGY--QSWGPLFGKLFFAIWVIAHLYPFLKG 713
            RL  ++R+AYIN   YP+TS+ L+ Y   P   +    F I +      ++ +++       G++EI+W+G+ + DW RNEQF++IG T+ +  AV   +LK   L G+    T    AS     FAELY  +W  LL P   V+ VN+  I A +  A+  G+     G     L F +W++  +YPF  G
Sbjct:  639 RLNFMQRIAYINMTGYPVTSVFLLFYLLFPVIWIFRGIFYIQKPFPTYVLYLVIVIFMSEMIGMVEIKWAGLTLLDWIRNEQFYIIGATAVYPLAVLHIVLKCFGLKGVSFKLTAKQVASSTSEKFAELYDVQWAPLLFPTIVVIAVNICAIGAAIGKALFGGWSLMQMGDASLGLVFNVWILLLIYPFALG 830          
BLAST of FC925244 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSJ (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. japonica GN=CSLF3 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.709e-25
Identity = 67/211 (31.75%), Postives = 117/211 (55.45%), Query Frame = 3
Query:  123 MDLWYGYNG------RLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSK--ASDDDGDFAELYVFKWTSLLIPPTTVLIVNL--VGIVAGVS------WAI-NSGYQSWGPLFGKLFFAIWVIAHLYPF 704
            +++++ +N       RL+ L+R++Y+N  +YP+TS+ ++ Y   P   L+ ++  I        ++ +++ + I   G LEI+W+G+   D+WRNEQF++IG TSA+  AV   ++ +L     +F VTSK   +D +  FA+LY  +W  +LIP   VL+ N+  +G+  G +      W I    + + G     L F +WV+  LYPF
Sbjct:  620 LEMFFSHNNPLIGGRRLQPLQRVSYLNMTIYPVTSLFILLYAISPVMWLIPDEVYIQRPFTRYVVYLLVIILMIHMIGWLEIKWAGITWLDYWRNEQFFMIGSTSAYPTAVLHMVVNLLTKKGIHFRVTSKQTTADTNDKFADLYEMRWVPMLIPTMVVLVANIGAIGVAIGKTAVYMGVWTIAQKRHAAMG-----LLFNMWVMFLLYPF 825          
BLAST of FC925244 vs. ExPASy Swiss-Prot
Match: CSLF9_ORYSJ (Probable mixed-linked glucan synthase 9 OS=Oryza sativa subsp. japonica GN=CSLF9 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.789e-24
Identity = 70/195 (35.90%), Postives = 107/195 (54.87%), Query Frame = 3
Query:  150 RLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTN-KFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGI-DTNFTVTSK--ASDDDGDFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGY---QSWGPLFGKLFFAIWVIAHLYPFLKG 713
            RL+ ++R+AY N   YP++++ ++ Y  LP   L  + +F I +  +    + + +   I   G++EI+W+G+ + DWWRNEQF++IG T  +L AV   +LK L G+    F +T+K  A      FAELY   W+ LL P   V+ VN+  I A    A+  G+   Q  G   G L F +WV+  LYPF  G
Sbjct:  627 RLRPMQRVAYANMTAYPVSALFMVVYDLLPVIWLSHHGEFHIQKPFSTYVAYLVAVIAMIEVIGLVEIKWAGLTLLDWWRNEQFYMIGATGVYLAAVLHIVLKRLLGLKGVRFKLTAKQLAGGARERFAELYDVHWSPLLAPTVVVMAVNVTAIGAAAGKAVVGGWTPAQVAGASAG-LVFNVWVLVLLYPFALG 820          
BLAST of FC925244 vs. ExPASy Swiss-Prot
Match: CSLG1_ARATH (Cellulose synthase-like protein G1 OS=Arabidopsis thaliana GN=CSLG1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.059e-16
Identity = 63/211 (29.86%), Postives = 97/211 (45.97%), Query Frame = 3
Query:   84 WL*GQD*MGQRDWMDLWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDDDGDFA--ELYVFKW---TSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYP 701
            W  G   M    +  + YG    L LL  L Y N+   P  SIPL  Y  LP   L++   + P+ S+     +I+LF   +A  + +    G     WW +++  +I G S+  F   + +LK L      F VTSKA+DDD      E  +F +   +S+ +P TTV IVNL+  V G+   +  G    G L+ +L    + + +  P
Sbjct:  489 WAVGLFEMSFSKYSPITYGIKS-LDLLMGLGYCNSPFKPFWSIPLTVYGLLPQLALISGVSVFPKASDPWFWLYIILFFGAYAQDLSDFLLEGGTYRKWWNDQRMLMIKGLSSFFFGFIEFILKTLNLSTPKFNVTSKANDDDEQRKRYEQEIFDFGTSSSMFLPLTTVAIVNLLAFVWGLYGILFCG----GELYLELMLVSFAVVNCLP 694          
BLAST of FC925244 vs. ExPASy Swiss-Prot
Match: CSLG3_ARATH (Cellulose synthase-like protein G3 OS=Arabidopsis thaliana GN=CSLG3 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.815e-16
Identity = 58/187 (31.02%), Postives = 91/187 (48.66%), Query Frame = 3
Query:  159 LLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDDDGDFA--ELYVFKW---TSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGP-LFGKLFFAIWVIAHLYP 701
            L+  + Y     +   S+PLI Y  LP   LL    + P+ S+     +I+LF+  +   +L+    G     WW +++ W I G S+HLF   +  LK L      F VTSKA+DD+      E  +F++   +S+ +P TTV IVNL+  V G+      G  +WG  L  +L  A + + +  P
Sbjct:  532 LVTGVGYCQYACWAFWSLPLIVYGFLPQLALLYQSSVFPKSSDPWFWLYIVLFLGAYGQDLLDFVLEGGTYGGWWNDQRMWSIRGFSSHLFGFIEFTLKTLNLSTHGFNVTSKANDDEEQSKRYEKEIFEFGPSSSMFLPLTTVAIVNLLAFVWGL-----YGLFAWGEGLVLELMLASFAVVNCLP 713          
The following BLAST results are available for this feature:
BLAST of FC925244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CSLF7_ORYSJ2.578e-3138.21Probable mixed-linked glucan synthase 7 OS=Oryza s... [more]
CSLF4_ORYSJ4.259e-2634.02Mixed-linked glucan synthase 4 OS=Oryza sativa sub... [more]
CSLF1_ORYSJ1.239e-2531.47Putative mixed-linked glucan synthase 1 OS=Oryza s... [more]
CSLF3_ORYSI2.114e-2532.37Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]
CSLF2_ORYSJ2.114e-2531.98Mixed-linked glucan synthase 2 OS=Oryza sativa sub... [more]
CSLF8_ORYSJ2.761e-2533.33Probable mixed-linked glucan synthase 8 OS=Oryza s... [more]
CSLF3_ORYSJ4.709e-2531.75Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]
CSLF9_ORYSJ1.789e-2435.90Probable mixed-linked glucan synthase 9 OS=Oryza s... [more]
CSLG1_ARATH3.059e-1629.86Cellulose synthase-like protein G1 OS=Arabidopsis ... [more]
CSLG3_ARATH6.815e-1631.02Cellulose synthase-like protein G3 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YG01FM1 TF Citrus clementina cDNA clone KN0AAP8YG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925244 ID=FC925244; Name=FC925244; organism=Citrus clementina; type=EST; length=715bp
GCTACCTTCATGGAACAGGGAGGCATTCCACCGACAACTAATCCTGCAAG
TCTTCTAAAGGAAGCAATCCATGTTATTAGTTGTGGTTATGAGGACAAGA
CTGAATGGGGCAAAGAGATTGGATGGATCTATGGTATGGCTACAATGGGA
GATTGAAGCTTTTGGAGAGACTGGCGTACATTAACACTATTGTCTACCCA
CTGACCTCCATCCCACTAATTGCTTACTGCACGCTTCCTGCTTTTTGCCT
TCTTACTAATAAATTCATCATTCCAGAGATAAGCAACTTTGCTAGCATGT
GGTTTATTCTACTTTTCATTTCCATTTTTGCTACTGGAATACTGGAGATT
AGATGGAGTGGGGTTGGTATTGAGGACTGGTGGAGGAATGAACAGTTCTG
GGTCATTGGTGGAACATCAGCACATCTATTTGCTGTTTTCCAAGGTCTCT
TGAAAGTGCTTGCTGGGATTGATACCAACTTTACTGTCACTTCAAAGGCT
TCTGATGATGATGGAGATTTTGCAGAGCTTTATGTATTCAAATGGACATC
TCTTCTCATCCCTCCAACTACAGTCCTGATTGTGAACTTGGTGGGTATTG
TAGCTGGTGTATCATGGGCCATAAACAGTGGTTACCAATCATGGGGTCCA
CTCTTTGGCAAGCTATTCTTTGCCATATGGGTCATTGCCCATCTGTATCC
TTTCCTGAAGGGTCT
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