FC925244
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC925244 vs. ExPASy Swiss-Prot
Match: CSLF7_ORYSJ (Probable mixed-linked glucan synthase 7 OS=Oryza sativa subsp. japonica GN=CSLF7 PE=1 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.578e-31 Identity = 81/212 (38.21%), Postives = 113/212 (53.30%), Query Frame = 3 Query: 138 GYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLT-----NKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSK--------ASDDDGDFAELYVFKWTSLLIPPTTVLIVNLVGIVA---GVSW----AINSGYQSWGPLFGKLFFAIWVIAHLYPFLKG 713 G RL L+R AY+NT VYP TS+ L+AYC PA L+ N P F + L +++ A +LE RWSG+ + +WWRNEQFW++ TSA+L AV Q LKV G + +F +TSK + D +AELY +WT+L+ P L VN+ + A G W A ++ + L + F +WV+ HLYPF G Sbjct: 589 GGRRRLHPLQRAAYLNTTVYPFTSLFLMAYCLFPAIPLIAGGGGWNAAPTPTYVAFLAA----LMVTLAAVAVLETRWSGIALGEWWRNEQFWMVSATSAYLAAVAQVALKVATGKEISFKLTSKHLASSATPVAGKDRQYAELYAVRWTALMAPTAAALAVNVASMAAAGGGGRWWWWDAPSAAAAAAAAL--PVAFNVWVVVHLYPFALG 794
BLAST of FC925244 vs. ExPASy Swiss-Prot
Match: CSLF4_ORYSJ (Mixed-linked glucan synthase 4 OS=Oryza sativa subsp. japonica GN=CSLF4 PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 4.259e-26 Identity = 66/194 (34.02%), Postives = 106/194 (54.64%), Query Frame = 3 Query: 150 RLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSK-ASDDDGD-FAELYVFKWTSLLIPPTTVLIVNL--VGIVAG--VSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKG 713 RL L+R+AY+N YP+ ++ + Y P L++ ++ I + ++ + + I G+ E++WSG+ + DW RNEQF++IG T + AV LK+ G +F +TSK + GD FA+LY +W LLIP VL VN+ VG+ G +W + + + L + F +W++A LYPF G Sbjct: 650 RLHPLQRIAYLNMSTYPIVTVFIFFYNLFPVMWLISEQYYIQQPFGEYLLYLVAIIAMIHVIGMFEVKWSGITVLDWCRNEQFYMIGSTGVYPTAVLYMALKLFTGKGIHFRLTSKQTTASSGDKFADLYTVRWVPLLIPTIVVLAVNVGAVGVAVGKAAAWGLLTEQGRFAVL--GMVFNVWILALLYPFALG 841
BLAST of FC925244 vs. ExPASy Swiss-Prot
Match: CSLF1_ORYSJ (Putative mixed-linked glucan synthase 1 OS=Oryza sativa subsp. japonica GN=CSFL1 PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.239e-25 Identity = 62/197 (31.47%), Postives = 102/197 (51.78%), Query Frame = 3 Query: 150 RLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSK--ASDDDGDFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGK-------LFFAIWVIAHLYPFLKG 713 RL L+R+AY+N YP+ ++ + Y P L++ ++ I ++ + + I G+ E++W+G+ + DW RNEQF++IG T + AV LK++ G F +TSK A+ FA+LY +W LLIP +++VN+ + V A +WGPL + F +W++ LYPF G Sbjct: 611 RLHPLQRVAYLNMSTYPIVTVFIFFYNLFPVMWLISEQYYIQRPFGEYLLYLVAVIAMIHVIGMFEVKWAGITLLDWCRNEQFYMIGSTGVYPTAVLYMALKLVTGKGIYFRLTSKQTAASSGDKFADLYTVRWVPLLIPTIVIMVVNVAAVGVAVGKA-----AAWGPLTEPGWLAVLGMVFNVWILVLLYPFALG 802
BLAST of FC925244 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSI (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. indica GN=CSLF3 PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.114e-25 Identity = 67/207 (32.37%), Postives = 117/207 (56.52%), Query Frame = 3 Query: 123 MDLWYGYNG------RLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSK--ASDDDGDFAELYVFKWTSLLIPPTTVLIVNL--VGIVAG---VSWAINSGYQSWGPLFGKLFFAIWVIAHLYPF 704 +++++ +N RL+ L+R++Y+N +YP+TS+ ++ Y P L+ ++ I ++ +++ + I G LEI+W+G+ D+WRNEQF++IG TSA+ AV ++ +L +F VTSK +D + FA+LY +W +LIP VL+ N+ +G+ G V + + Q + G L F +WV+ LYPF Sbjct: 620 LEMFFSHNNPLIGGRRLQPLQRVSYLNMTIYPVTSLFILLYAISPVMWLIPDEVYIQRPFTRYVVYLLMIILMIHMIGWLEIKWAGITWLDYWRNEQFFMIGSTSAYPTAVLHMVVNLLTKKGIHFRVTSKQTTADTNDKFADLYEMRWVPMLIPTMVVLVANIGAIGVAIGKMAVYMGVWTIAQKRHAIMG-LLFNMWVMFLLYPF 825
BLAST of FC925244 vs. ExPASy Swiss-Prot
Match: CSLF2_ORYSJ (Mixed-linked glucan synthase 2 OS=Oryza sativa subsp. japonica GN=CSLF2 PE=2 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.114e-25 Identity = 63/197 (31.98%), Postives = 103/197 (52.28%), Query Frame = 3 Query: 150 RLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSK-ASDDDGD-FAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGK-------LFFAIWVIAHLYPFLKG 713 RL L+R+AY+N YP+ ++ + Y P L++ ++ I ++ + + I G+ E++W+G+ + DW RNEQF++IG T + AV LK++ G F +TSK + GD FA+LY +W LLIP +++VN+ + V A +WGPL + F +W++ LYPF G Sbjct: 641 RLHPLQRVAYLNMSTYPIVTVFIFFYNLFPVMWLISEQYYIQRPFGEYLLYLVAVIAMIHVIGMFEVKWAGITLLDWCRNEQFYMIGSTGVYPTAVLYMALKLVTGKGIYFRLTSKQTTASSGDKFADLYTVRWVPLLIPTIVIIVVNVAAVGVAVGKA-----AAWGPLTEPGWLAVLGMVFNVWILVLLYPFALG 832
BLAST of FC925244 vs. ExPASy Swiss-Prot
Match: CSLF8_ORYSJ (Probable mixed-linked glucan synthase 8 OS=Oryza sativa subsp. japonica GN=CSFL8 PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.761e-25 Identity = 64/192 (33.33%), Postives = 99/192 (51.56%), Query Frame = 3 Query: 150 RLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKV--LAGIDTNFTVTSKASDDDGDFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGY--QSWGPLFGKLFFAIWVIAHLYPFLKG 713 RL ++R+AYIN YP+TS+ L+ Y P + F I + ++ +++ G++EI+W+G+ + DW RNEQF++IG T+ + AV +LK L G+ T AS FAELY +W LL P V+ VN+ I A + A+ G+ G L F +W++ +YPF G Sbjct: 639 RLNFMQRIAYINMTGYPVTSVFLLFYLLFPVIWIFRGIFYIQKPFPTYVLYLVIVIFMSEMIGMVEIKWAGLTLLDWIRNEQFYIIGATAVYPLAVLHIVLKCFGLKGVSFKLTAKQVASSTSEKFAELYDVQWAPLLFPTIVVIAVNICAIGAAIGKALFGGWSLMQMGDASLGLVFNVWILLLIYPFALG 830
BLAST of FC925244 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSJ (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. japonica GN=CSLF3 PE=2 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 4.709e-25 Identity = 67/211 (31.75%), Postives = 117/211 (55.45%), Query Frame = 3 Query: 123 MDLWYGYNG------RLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSK--ASDDDGDFAELYVFKWTSLLIPPTTVLIVNL--VGIVAGVS------WAI-NSGYQSWGPLFGKLFFAIWVIAHLYPF 704 +++++ +N RL+ L+R++Y+N +YP+TS+ ++ Y P L+ ++ I ++ +++ + I G LEI+W+G+ D+WRNEQF++IG TSA+ AV ++ +L +F VTSK +D + FA+LY +W +LIP VL+ N+ +G+ G + W I + + G L F +WV+ LYPF Sbjct: 620 LEMFFSHNNPLIGGRRLQPLQRVSYLNMTIYPVTSLFILLYAISPVMWLIPDEVYIQRPFTRYVVYLLVIILMIHMIGWLEIKWAGITWLDYWRNEQFFMIGSTSAYPTAVLHMVVNLLTKKGIHFRVTSKQTTADTNDKFADLYEMRWVPMLIPTMVVLVANIGAIGVAIGKTAVYMGVWTIAQKRHAAMG-----LLFNMWVMFLLYPF 825
BLAST of FC925244 vs. ExPASy Swiss-Prot
Match: CSLF9_ORYSJ (Probable mixed-linked glucan synthase 9 OS=Oryza sativa subsp. japonica GN=CSLF9 PE=2 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.789e-24 Identity = 70/195 (35.90%), Postives = 107/195 (54.87%), Query Frame = 3 Query: 150 RLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTN-KFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGI-DTNFTVTSK--ASDDDGDFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGY---QSWGPLFGKLFFAIWVIAHLYPFLKG 713 RL+ ++R+AY N YP++++ ++ Y LP L + +F I + + + + + I G++EI+W+G+ + DWWRNEQF++IG T +L AV +LK L G+ F +T+K A FAELY W+ LL P V+ VN+ I A A+ G+ Q G G L F +WV+ LYPF G Sbjct: 627 RLRPMQRVAYANMTAYPVSALFMVVYDLLPVIWLSHHGEFHIQKPFSTYVAYLVAVIAMIEVIGLVEIKWAGLTLLDWWRNEQFYMIGATGVYLAAVLHIVLKRLLGLKGVRFKLTAKQLAGGARERFAELYDVHWSPLLAPTVVVMAVNVTAIGAAAGKAVVGGWTPAQVAGASAG-LVFNVWVLVLLYPFALG 820
BLAST of FC925244 vs. ExPASy Swiss-Prot
Match: CSLG1_ARATH (Cellulose synthase-like protein G1 OS=Arabidopsis thaliana GN=CSLG1 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.059e-16 Identity = 63/211 (29.86%), Postives = 97/211 (45.97%), Query Frame = 3 Query: 84 WL*GQD*MGQRDWMDLWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDDDGDFA--ELYVFKW---TSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYP 701 W G M + + YG L LL L Y N+ P SIPL Y LP L++ + P+ S+ +I+LF +A + + G WW +++ +I G S+ F + +LK L F VTSKA+DDD E +F + +S+ +P TTV IVNL+ V G+ + G G L+ +L + + + P Sbjct: 489 WAVGLFEMSFSKYSPITYGIKS-LDLLMGLGYCNSPFKPFWSIPLTVYGLLPQLALISGVSVFPKASDPWFWLYIILFFGAYAQDLSDFLLEGGTYRKWWNDQRMLMIKGLSSFFFGFIEFILKTLNLSTPKFNVTSKANDDDEQRKRYEQEIFDFGTSSSMFLPLTTVAIVNLLAFVWGLYGILFCG----GELYLELMLVSFAVVNCLP 694
BLAST of FC925244 vs. ExPASy Swiss-Prot
Match: CSLG3_ARATH (Cellulose synthase-like protein G3 OS=Arabidopsis thaliana GN=CSLG3 PE=2 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 6.815e-16 Identity = 58/187 (31.02%), Postives = 91/187 (48.66%), Query Frame = 3 Query: 159 LLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDDDGDFA--ELYVFKW---TSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGP-LFGKLFFAIWVIAHLYP 701 L+ + Y + S+PLI Y LP LL + P+ S+ +I+LF+ + +L+ G WW +++ W I G S+HLF + LK L F VTSKA+DD+ E +F++ +S+ +P TTV IVNL+ V G+ G +WG L +L A + + + P Sbjct: 532 LVTGVGYCQYACWAFWSLPLIVYGFLPQLALLYQSSVFPKSSDPWFWLYIVLFLGAYGQDLLDFVLEGGTYGGWWNDQRMWSIRGFSSHLFGFIEFTLKTLNLSTHGFNVTSKANDDEEQSKRYEKEIFEFGPSSSMFLPLTTVAIVNLLAFVWGL-----YGLFAWGEGLVLELMLASFAVVNCLP 713 The following BLAST results are available for this feature:
BLAST of FC925244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 59
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Sequences
The
following sequences are available for this feature:
EST sequence >FC925244 ID=FC925244; Name=FC925244; organism=Citrus clementina; type=EST; length=715bpback to top |