FC925249

Overview
NameFC925249
Unique NameFC925249
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925249 vs. ExPASy Swiss-Prot
Match: TPSDV_ABIGR (Abietadiene synthase, chloroplastic OS=Abies grandis GN=ag22 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.177e-33
Identity = 77/228 (33.77%), Postives = 125/228 (54.82%), Query Frame = 2
Query:   26 LSFARNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKHAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHE-TGASEEVAREHIKDMM 706
            L+F R R+   +       FEP+F+ CR V T +     ++DD+YD +G+LD+L++FT++V RWD++  +  +P  MK+CF+  YN  N+ A    ++Q  D+L  I++ W   ++AY  EA+W  +KY P   EY+EN  VSI    ++ IS L     +  + L  ++     +       RL +D  T   E  +G+V  +IQCYM +    SEE A +H+  +M
Sbjct:  580 LNFTRERVTEIYFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLS-LVDQMPQQMKICFVGFYNTFNDIAKEGRERQGRDVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLISALFTGEVLTDEVLSKIDRESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVM 806          
BLAST of FC925249 vs. ExPASy Swiss-Prot
Match: TPSD6_ABIGR (Camphene synthase, chloroplastic OS=Abies grandis GN=ag6 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.844e-33
Identity = 95/240 (39.58%), Postives = 130/240 (54.17%), Query Frame = 2
Query:    2 KDTGLGEKLSFARNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKHAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPI---IKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHET-GASEEVAREHIKDMMR 709
            KD+G  E ++F R+R V  +  +  IAFEPQ +  R   T    LITV+DD+YDV+GT+DELE+FT  + RWD + A++ LP YMK  ++ +Y+ VNE A    K Q  D L   + AW     +Y+ EAKW  + Y P  EEYLENG VS           L+   P    I KE++F     D++     I RL+ D      +  RG+   SI CYM +  G +EE A  HI  M+R
Sbjct:  321 KDSGSPE-MTFCRHRHVEYYALASCIAFEPQHSGFRLGFTKMSHLITVLDDMYDVFGTVDELELFTATIKRWDPS-AMECLPEYMKGVYMMVYHTVNEMARVAEKAQGRDTLNYARQAWEACFDSYMQEAKWIATGYLPTFEEYLENGKVSSAHRPCALQPILTLDIPFPDHILKEVDFPSKLNDLI---CIILRLRGDTRCYKADRARGEEASSISCYMKDNPGLTEEDALNHINFMIR 555          
BLAST of FC925249 vs. ExPASy Swiss-Prot
Match: DCS4_GOSAR ((+)-delta-cadinene synthase isozyme C2 OS=Gossypium arboreum GN=CAD1-C2 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.844e-33
Identity = 78/240 (32.50%), Postives = 127/240 (52.92%), Query Frame = 2
Query:    2 KDTGLGEKLSFARNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKHAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVAREHIKDMMRQMWK 721
            KD     KL +AR+R+V  + W  G+ FEPQ++  R++LT  IA+ +++DD YD Y T +EL  +T+A+ RWDI   +  LP YMK  + AL +   E    V +      +   K+A + L Q+YLVEA+W    Y P  EE+  N L +    ++   S++   + +  +  ++  ++P I+  S+ I R  DD+     + +R D   +I+CYM E G S + A +     +   WK
Sbjct:  258 KDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIK-CIDELPEYMKPSYKALLDVYKEMEQLVAEHGRQYRVEYAKNAMIRLAQSYLVEARWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAANDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVSAQEAYDVFNKHVESAWK 496          
BLAST of FC925249 vs. ExPASy Swiss-Prot
Match: TPSD2_PICAB (Isopimaradiene synthase, chloroplastic OS=Picea abies GN=TPS-ISO PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 3.714e-33
Identity = 85/236 (36.02%), Postives = 127/236 (53.81%), Query Frame = 2
Query:    2 KDTGLGEKLSFARNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKHAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHE-TGASEEVAREHIKDMM 706
            K +GL E L F R R+   +  +    FEP+FA CR V T       ++DD+YD +GTLD LE+F++ V RWD++  +  +P  MK+CF  LYN VNE A    K+Q  D+L  I++    L+ A+  EA+W  ++Y P  +EY+EN  VSI+   ++ IS L     +    L  +      +       RL +D  T   E  +G+V  ++QCYM E    SEE A +H+  +M
Sbjct:  571 KSSGLSE-LKFTRERVTEIYFSAASFIFEPEFATCRDVYTKISIFTVILDDLYDAHGTLDNLELFSEGVKRWDLS-LVDRMPQDMKICFTVLYNTVNEIAVEGRKRQGRDVLGYIRNVLEILLAAHTKEAEWSAARYVPSFDEYIENASVSISLGTLVLISVLFTGEILTDDVLSKIGRGSRFLQLMGLTGRLVNDTKTYEAERGQGEVASAVQCYMKEHPEISEEEALKHVYTVM 804          
BLAST of FC925249 vs. ExPASy Swiss-Prot
Match: DCS2_GOSAR ((+)-delta-cadinene synthase isozyme XC14 OS=Gossypium arboreum PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.714e-33
Identity = 78/240 (32.50%), Postives = 126/240 (52.50%), Query Frame = 2
Query:    2 KDTGLGEKLSFARNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKHAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVAREHIKDMMRQMWK 721
            KD     KL +AR+R+V  + W  G+ FEPQ++  R++LT  IA+ +++DD YD Y T +EL  +T A+ RWDI   +  LP YMK  + AL +   E    V K      +   K+A + L Q+YLVEA+W    Y P  EE+  N L +    ++   S++   + +  +  ++  ++P I+  S+ I R  DD+     + +R D   +I+CYM E G + + A +     +   WK
Sbjct:  258 KDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTKAIERWDIK-CIDELPEYMKPSYKALLDVYEEMEQLVAKHGRQYRVEYAKNAMIRLAQSYLVEARWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAANDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWK 496          
BLAST of FC925249 vs. ExPASy Swiss-Prot
Match: ECS1_ARTAN (Epi-cedrol synthase OS=Artemisia annua GN=ECS1 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.081e-32
Identity = 78/241 (32.37%), Postives = 122/241 (50.62%), Query Frame = 2
Query:    2 KDTGLGEKLSFARNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKHAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVAREHIKDMMRQMWKK 724
            K   +   L +ARNR V  + W++ + FEPQ++  R  L+   ++ T +DD YD YGT +ELE FT+A+ RW I   L  LP  MK+ F  L     E    + K      +  IK      +Q+Y+ EA+W   +Y P +EE+ +   +SI   L +   +    + I     E++ +NP +V+    + R  DDLG+   E  R  V  +I+CYM +  ASE+ A E +   +   WK+
Sbjct:  250 KSFDVANNLPYARNRPVECYFWALAVYFEPQYSESRVFLSRFFSIQTFLDDTYDAYGTYEELEQFTEAIQRWSIT-CLDGLPESMKLIFQMLVKIFEEIEEILSKDGKQHHVNYIKETLKEAVQSYMTEARWAKEEYIPTIEEHTKVSYISIGYKLALVAGFACMGDVIADDSFEWVFTNPPLVNACCLLCRTMDDLGSHKGEQDRKHVASTIECYMKQFDASEQQAYESLNKKVEDAWKE 489          
BLAST of FC925249 vs. ExPASy Swiss-Prot
Match: DCS1_GOSHI ((+)-delta-cadinene synthase OS=Gossypium hirsutum GN=CDN1 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.081e-32
Identity = 77/240 (32.08%), Postives = 127/240 (52.92%), Query Frame = 2
Query:    2 KDTGLGEKLSFARNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKHAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVAREHIKDMMRQMWK 721
            KD     KL +AR+R+V  + W  G+ FEPQ++  R++LT  IA+ +++DD YD Y T +EL  +T+A+ RWDI   +  LP YMK  + AL +   E    V +      +   K+A + L Q+YLVEA+W    Y P  EE+  N L +    ++   S++   + +  +  ++  ++P I+  S+ I R  DD+     + +R D   +I+CYM E G + + A +     +   WK
Sbjct:  258 KDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIK-CIDELPEYMKPSYKALLDVYEEMEQLVAEHGRQYRVEYAKNAMIRLAQSYLVEARWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAANDPKIIQASTIICRFMDDVTEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWK 496          
BLAST of FC925249 vs. ExPASy Swiss-Prot
Match: TPSD1_PICAB (Levopimaradiene synthase, chloroplastic OS=Picea abies GN=TPS-LAS PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.843e-32
Identity = 77/229 (33.62%), Postives = 124/229 (54.15%), Query Frame = 2
Query:   23 KLSFARNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKHAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHE-TGASEEVAREHIKDMM 706
            +L F R R+   +       FEP+FA CR V T +     ++DD+YD +GTLD+L++F+D+V +WD++  +  +P  MK+CF+  YN  NE A    K+Q  D+L  I++ W   ++AY  EA+W  ++Y P  +EY++N  VSI    ++ IS L     +    L  +      +       RL +D  T   E  +G+V  ++QCYM +    SEE A +H+  +M
Sbjct:  569 ELKFTRERVTEIYFSPASFMFEPEFATCRAVYTKTSNFTVILDDLYDAHGTLDDLKLFSDSVKKWDLS-LVDRMPQDMKICFMGFYNTFNEIAEEGRKRQGRDVLGYIRNVWEIQLEAYTKEAEWSAARYVPSFDEYIDNASVSIALGTVVLISALFTGEILTDDVLSKIGRGSRFLQLMGLTGRLVNDTKTYEAERGQGEVASAVQCYMKDHPEISEEEALKHVYTVM 796          
BLAST of FC925249 vs. ExPASy Swiss-Prot
Match: TPSD3_ABIGR (Pinene synthase, chloroplastic OS=Abies grandis GN=ag3 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.363e-32
Identity = 90/244 (36.89%), Postives = 132/244 (54.10%), Query Frame = 2
Query:    2 KDTGLGEKLSFARNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKHAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPI---IKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHET-GASEEVAREHIKDMMRQMWK 721
            K++G  E ++F R+R V  +  +  IAFEPQ +  R     +  LITV+DD+YD +GT+DELE+FT  + RWD + ++  LP YMK  ++A+Y+ VNE A    + Q  D L   + AW   I +Y+ EA+W  + Y P  +EY ENG VS    +      L+   P    I KE++F     D+   +  I RL+ D      +  RG+   SI CYM +  G SEE A +HI  M+  + K
Sbjct:  331 KESGFPE-MTFCRHRHVEYYTLASCIAFEPQHSGFRLGFAKTCHLITVLDDMYDTFGTVDELELFTATMKRWDPS-SIDCLPEYMKGVYIAVYDTVNEMAREAEEAQGRDTLTYAREAWEAYIDSYMQEARWIATGYLPSFDEYYENGKVSCGHRISALQPILTMDIPFPDHILKEVDFPSKLNDL---ACAILRLRGDTRCYKADRARGEEASSISCYMKDNPGVSEEDALDHINAMISDVIK 569          
BLAST of FC925249 vs. ExPASy Swiss-Prot
Match: TPSD1_PINTA (Levopimaradiene synthase, chloroplastic OS=Pinus taeda GN=LPS PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.930e-31
Identity = 77/229 (33.62%), Postives = 121/229 (52.84%), Query Frame = 2
Query:   23 KLSFARNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKHAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHE-TGASEEVAREHIKDMM 706
            +L F R R+   +       FEP+FA CR V T +     ++DD+YD +GTLD L++F+++V RWD++  +  +P  MK+CF   YN  NE A    K+Q  D+L  I+  W   ++AY  EA+W   +Y P  +EY+ N  VSI    ++ IS L     +    L  +  +   ++      RL +D  T   E  +G+V  ++QCYM +    SEE A +H+  +M
Sbjct:  560 QLGFTRERVAEIYFSPASFLFEPEFATCRAVYTKTSNFTVILDDLYDAHGTLDNLKLFSESVKRWDLS-LVDQMPQDMKICFKGFYNTFNEIAEEGRKRQGRDVLSYIQKVWEVQLEAYTKEAEWSAVRYVPSYDEYIGNASVSIALGTVVLISALFTGEILTDDILSKIGRDSRFLYLMGLTGRLVNDTKTYQAERGQGEVASAVQCYMKDHPEISEEEALKHVYTIM 787          
The following BLAST results are available for this feature:
BLAST of FC925249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
TPSDV_ABIGR2.177e-3333.77Abietadiene synthase, chloroplastic OS=Abies grand... [more]
TPSD6_ABIGR2.844e-3339.58Camphene synthase, chloroplastic OS=Abies grandis ... [more]
DCS4_GOSAR2.844e-3332.50(+)-delta-cadinene synthase isozyme C2 OS=Gossypiu... [more]
TPSD2_PICAB3.714e-3336.02Isopimaradiene synthase, chloroplastic OS=Picea ab... [more]
DCS2_GOSAR3.714e-3332.50(+)-delta-cadinene synthase isozyme XC14 OS=Gossyp... [more]
ECS1_ARTAN1.081e-3232.37Epi-cedrol synthase OS=Artemisia annua GN=ECS1 PE=... [more]
DCS1_GOSHI1.081e-3232.08(+)-delta-cadinene synthase OS=Gossypium hirsutum ... [more]
TPSD1_PICAB1.843e-3233.62Levopimaradiene synthase, chloroplastic OS=Picea a... [more]
TPSD3_ABIGR5.363e-3236.89Pinene synthase, chloroplastic OS=Abies grandis GN... [more]
TPSD1_PINTA5.930e-3133.62Levopimaradiene synthase, chloroplastic OS=Pinus t... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YG05FM1 TF Citrus clementina cDNA clone KN0AAP8YG05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925249 ID=FC925249; Name=FC925249; organism=Citrus clementina; type=EST; length=724bp
GAAGGATACAGGTCTTGGAGAGAAATTGAGCTTTGCGAGGAACAGGTTGG
TAGCGTCCTTCTTATGGAGCATGGGGATCGCGTTTGAGCCTCAATTCGCC
TACTGCAGGAGAGTGCTCACAATCTCGATAGCCCTAATTACAGTGATTGA
TGACATTTATGATGTCTATGGAACATTGGATGAACTTGAGATATTCACTG
ATGCTGTTGCGAGGTGGGACATCAATTATGCTTTGAAGCACCTTCCGGGC
TATATGAAAATGTGTTTTCTTGCCCTTTACAACTTTGTTAATGAATTTGC
TTATTACGTTCTCAAACAACAGGATTTTGATATGCTTCTGAGCATAAAAC
ATGCATGGCTTGGCTTAATACAAGCCTACTTGGTGGAGGCGAAATGGTAC
CATAGCAAGTACACACCGAAACTGGAAGAATACTTGGAAAATGGATTGGT
ATCAATAACGGGCCCTTTAATTATAACGATTTCATATCTTTCTGGTACAA
ATCCAATCATTAAGAAGGAACTGGAATTTCTAGAAAGTAATCCAGATATA
GTTCACTGGTCATCCAAGATTTTCCGTCTGCAAGATGATTTGGGAACTTC
ATCGGACGAGATACAGAGAGGGGATGTTCCGAAATCAATCCAGTGTTACA
TGCATGAAACTGGTGCCTCGGAGGAAGTTGCTCGTGAACACATCAAGGAT
ATGATGAGACAGATGTGGAAGAAG
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