FC925249

Overview
NameFC925249
Unique NameFC925249
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925249 vs. ExPASy Swiss-Prot
Match: TPSDA_ABIGR (Limonene synthase, chloroplastic OS=Abies grandis GN=ag10 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.744e-31
Identity = 85/237 (35.86%), Postives = 129/237 (54.43%), Query Frame = 2
Query:    2 KDTGLGEKLSFARNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKHAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITIS-YLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHE-TGASEEVAREHIKDMM 706
            K++G   +L+F R+R V  +  +  I+  P+ +  R        L+TV+DDIYD +GT++EL++FTDA+ RWD++   + LP YMK  ++ LY  +NE      K Q  DML  I++AW  L   ++ EAKW  S Y P  EEYL+N  VS +G  I T+   L+   P+    L+ ++        +S I RL+ D      +  RG+   +I CYM +  G+ EE A  HI  M+
Sbjct:  340 KESG-SSQLTFTRHRHVEYYTMASCISMLPKHSAFRMEFVKVCHLVTVLDDIYDTFGTMNELQLFTDAIKRWDLS-TTRWLPEYMKGVYMDLYQCINEMVEEAEKTQGRDMLNYIQNAWEALFDTFMQEAKWISSSYLPTFEEYLKNAKVS-SGSRIATLQPILTLDVPLPDYILQEIDYPSRFNELASSILRLRGDTRCYKADRARGEEASAISCYMKDHPGSIEEDALNHINAMI 573          
BLAST of FC925249 vs. ExPASy Swiss-Prot
Match: TPSD2_ABIGR (Myrcene synthase, chloroplastic OS=Abies grandis GN=ag2 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.725e-30
Identity = 83/239 (34.73%), Postives = 127/239 (53.14%), Query Frame = 2
Query:   23 KLSFARNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKHAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTN----PIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHET-GASEEVAREHIKDMMRQMWKK 724
            KL+FAR+R V  +  +  IA +P+ +  R        L+TV+DDIYD +GT+DELE+FT A+ RW+ +  ++HLP YMK  ++ ++  VNE      K Q  + L  ++ AW     +Y+ EAKW  + Y P  EEY ENG VS +   + T+  +   N      I K ++F     D+   +S   RL+ D      +  RG+    I CYM +  G++EE A  HI  M+  + K+
Sbjct:  336 KLTFARHRHVEFYTLASCIAIDPKHSAFRLGFAKMCHLVTVLDDIYDTFGTIDELELFTSAIKRWN-SSEIEHLPEYMKCVYMVVFETVNELTREAEKTQGRNTLNYVRKAWEAYFDSYMEEAKWISNGYLPMFEEYHENGKVS-SAYRVATLQPILTLNAWLPDYILKGIDFPSRFNDL---ASSFLRLRGDTRCYKADRDRGEEASCISCYMKDNPGSTEEDALNHINAMVNDIIKE 569          
BLAST of FC925249 vs. ExPASy Swiss-Prot
Match: HUMS_ARATH (Alpha-humulene/(-)-(E)-beta-caryophyllene synthase OS=Arabidopsis thaliana GN=TPS21 PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.118e-29
Identity = 73/234 (31.20%), Postives = 123/234 (52.56%), Query Frame = 2
Query:   23 KLSFARNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARW-DINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKHAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVAREHIKDMMRQMWK 721
            K+++ R+R+  ++LWS+G  FEPQ++  R + T+++ L T +DD+YD YGT++ELE+FTDA+  W  +      +P  MK  +     F ++    + K+        +K +       Y+ EAKW    Y    +EY EN ++S     +I ++++  T+       E+L S+P I   S  I R  DD+ +   E +R  V   I CYM + G S+E A E + +++   WK
Sbjct:  257 KVTYTRHRITEAYLWSLGTYFEPQYSQARVITTMALILFTALDDMYDAYGTMEELELFTDAMDEWLPVVPDEIPIPDSMKFIYNVTVEFYDKLDEELEKEGRSGCGFHLKKSLQKTANGYMQEAKWLKKDYIATFDEYKENAILSSGYYALIAMTFVRMTDVAKLDAFEWLSSHPKIRVASEIISRFTDDISSYEFEHKREHVATGIDCYMQQFGVSKERAVEVMGNIVSDAWK 490          
BLAST of FC925249 vs. ExPASy Swiss-Prot
Match: AMS1_ARTAN (Amorpha-4,11-diene synthase OS=Artemisia annua GN=AMS1 PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.460e-29
Identity = 78/230 (33.91%), Postives = 123/230 (53.48%), Query Frame = 2
Query:   38 RNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKHAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITG--PLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVAREHIKDMMRQMWK 721
            R+R+V  + W +G  +EPQ++  R   T ++A+IT+IDD YD YGT +EL+IFT+AV RW I   L  LP YMK  +    +   E   ++ K+   D+    K      ++  +VEAKW +  + P  EE+  + +V ITG   L+ T  YL  ++   K+ +E+  S P +  +S  + R  +DL T   E +R     S++ YM E   +EE A+  I   +  +WK
Sbjct:  262 RDRIVECYFWGLGSGYEPQYSRARVFFTKAVAVITLIDDTYDAYGTYEELKIFTEAVERWSIT-CLDTLPEYMKPIYKLFMDTYTEMEEFLAKEGRTDLFNCGKEFVKEFVRNLMVEAKWANEGHIPTTEEH--DPVVIITGGANLLTTTCYLGMSDIFTKESVEWAVSAPPLFRYSGILGRRLNDLMTHKAEQERKHSSSSLESYMKEYNVNEEYAQTLIYKEVEDVWK 488          
BLAST of FC925249 vs. ExPASy Swiss-Prot
Match: TPSD8_ABIGR (Beta-phellandrene synthase, chloroplastic OS=Abies grandis GN=ag8 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.254e-29
Identity = 86/240 (35.83%), Postives = 123/240 (51.25%), Query Frame = 2
Query:    8 TGLGEKLSFARNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKHAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHET-GASEEVAREHIKDMMRQMWKK 724
            +GL E L+F R+R V  +  S  IA EP+ +  R     +  LITV+DDIYD +GT+DE+E+F +AV RW+ +   + LP YMK  ++ALY  + + A    K Q  D L   + AW   + +Y  EAKW  S Y P  EEYLEN  VS           L+   P+    L+ ++        +S   RL+ D      +  RG+   SI CYM +  G +EE A  HI  M+  + K+
Sbjct:  335 SGLPE-LTFGRHRHVEYYTLSSCIATEPKHSAFRLGFAKTCHLITVLDDIYDTFGTMDEIELFNEAVRRWNPS-EKERLPEYMKEIYMALYEALTDMAREAEKTQGRDTLNYARKAWEVYLDSYTQEAKWIASGYLPTFEEYLENAKVSSGHRAAALTPLLTLDVPLPDDVLKGIDFPSRFNDLASSFLRLRGDTRCYKADRDRGEEASSISCYMKDNPGLTEEDALNHINAMINDIIKE 572          
BLAST of FC925249 vs. ExPASy Swiss-Prot
Match: TPSDB_ABIGR (Limonene/alpha-pinene synthase, chloroplastic OS=Abies grandis GN=ag11 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.248e-29
Identity = 80/228 (35.09%), Postives = 121/228 (53.07%), Query Frame = 2
Query:   26 LSFARNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKHAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHE-TGASEEVAREHIKDMM 706
            L+F R+R V  +  +  I+ EP+ +  R     +  L+TV+DD+YD +GTLDEL++FT A  RWD++   K LP YMK  ++ LY  +NE A    K Q  D L  I++A+     +++ EAKW  S Y P  EEYL+NG VS           L+   P+    L+ ++        +S + RL+ D      +  RG+   +I CYM +  G++EE A  HI  M+
Sbjct:  347 LTFTRHRHVEYYTMASCISMEPKHSAFRLGFVKTCHLLTVLDDMYDTFGTLDELQLFTTAFKRWDLS-ETKCLPEYMKAVYMDLYQCLNELAQEAEKTQGRDTLNYIRNAYESHFDSFMHEAKWISSGYLPTFEEYLKNGKVSSGSRTATLQPILTLDVPLPNYILQEIDYPSRFNDLASSLLRLRGDTRCYKADRARGEEASAISCYMKDHPGSTEEDALNHINVMI 573          
BLAST of FC925249 vs. ExPASy Swiss-Prot
Match: TPSD9_ABIGR (Terpinolene synthase, chloroplastic OS=Abies grandis GN=ag9 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.367e-27
Identity = 84/245 (34.29%), Postives = 126/245 (51.43%), Query Frame = 2
Query:    2 KDTGLGEKLSFARNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKHAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPI---IKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHET-GASEEVAREHIKDMMRQMWKK 724
            KD+G    L+F+R+R V  +  +  I  + + +  R        LITV+DDIYD +GT++ELE+FT A  RWD + A   LP YMK  ++ +Y  VNE A    K Q  + L   + AW   + +Y+ EA+W  S Y P  EEY+E   VS    +      L+   P+   I +E++F     D++     I RL++D      +  RG+    I CYM E  G++EE A  HI  M+  + K+
Sbjct:  333 KDSGFSH-LTFSRHRHVEFYALASCIETDRKHSGFRLGFAKMCHLITVLDDIYDTFGTMEELELFTAAFKRWDPS-ATDLLPEYMKGLYMVVYETVNEIAREADKSQGRETLNDARRAWEAYLDSYMKEAEWISSGYLPTFEEYMETSKVSFGYRIFALQPILTMDVPLTHHILQEIDFPLRFNDLI---CSILRLKNDTRCYKADRARGEEASCISCYMKENPGSTEEDAINHINAMVNNLIKE 572          
BLAST of FC925249 vs. ExPASy Swiss-Prot
Match: TPSD5_ABIGR (Gamma-humulene synthase OS=Abies grandis GN=ag5 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.169e-24
Identity = 79/232 (34.05%), Postives = 118/232 (50.86%), Query Frame = 2
Query:   26 LSFARNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSI-KHAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITI--SYLSGTN-PIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASE-EVAREHIKDMM 706
            L+F R   V  + W      EP+F+  R   T    L+T++DD+YD +GTLD+L+IFT+ V RWD++  ++ LP +MK+ F       NE     +K Q  DM   I K+AW   ++AYL +A+W  + + P  +EYL NG  + TG  ++ +    L G + PI   E  FL S     H      RL DD      E   GD+   I+CY+ +   S  E A  H+  ++
Sbjct:  302 LNFYRKCYVEFYFWMAAAISEPEFSGSRVAFTKIAILMTMLDDLYDTHGTLDQLKIFTEGVRRWDVS-LVEGLPDFMKIAFEFWLKTSNELIAEAVKAQGQDMAAYIRKNAWERYLEAYLQDAEWIATGHVPTFDEYLNNGTPN-TGMCVLNLIPLLLMGEHLPIDILEQIFLPSR--FHHLIELASRLVDDARDFQAEKDHGDL-SCIECYLKDHPESTVEDALNHVNGLL 528          
BLAST of FC925249 vs. ExPASy Swiss-Prot
Match: TASY_TAXCH (Taxadiene synthase OS=Taxus chinensis GN=TDC1 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.198e-23
Identity = 77/240 (32.08%), Postives = 120/240 (50.00%), Query Frame = 2
Query:    2 KDTGLGEKLSFARNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKHAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSI-TGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIF-------RLQDDLGTSSDEIQRGDVPKSIQCYMHET-GASEEVAREHI 694
            K++G+ + ++F R+R+   +  S    FEP+++  R   T    L  + DD+ D++ TLDEL+ FT+ V RWD +  L  +P  M+ CF   +  + E    V+K Q  DML  I+  W      Y+ E +W  + Y P  EEYL+   +S+  GP  +    L G   ++K ++       + VH+ S +F       RL +D  T   E  RG     I CYM +  GA+EE A +HI
Sbjct:  567 KESGMAD-INFTRHRVAEVYFSSA--TFEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSL-LHEIPECMQTCFKVWFKLIEEVNNDVVKVQGRDMLAHIRKPWELYFNCYVQEREWLDAGYIPTFEEYLKTYAISVGLGPCTLQPILLMG--ELVKDDV------VEKVHYPSNMFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNLGATEEDAIKHI 794          
BLAST of FC925249 vs. ExPASy Swiss-Prot
Match: TASY_TAXBR (Taxadiene synthase OS=Taxus brevifolia GN=TDC1 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.564e-23
Identity = 77/240 (32.08%), Postives = 120/240 (50.00%), Query Frame = 2
Query:    2 KDTGLGEKLSFARNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKHAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSI-TGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIF-------RLQDDLGTSSDEIQRGDVPKSIQCYMHET-GASEEVAREHI 694
            K++G+ + ++F R+R+   +  S    FEP+++  R   T    L  + DD+ D++ TLDEL+ FT+ V RWD +  L  +P  M+ CF   +  + E    V+K Q  DML  I+  W      Y+ E +W  + Y P  EEYL+   +S+  GP  +    L G   ++K ++       + VH+ S +F       RL +D  T   E  RG     I CYM +  GA+EE A +HI
Sbjct:  567 KESGMAD-INFTRHRVAEVYFSSA--TFEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSL-LHEIPECMQTCFKVWFKLMEEVNNDVVKVQGRDMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILLMG--ELVKDDV------VEKVHYPSNMFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNPGATEEDAIKHI 794          
The following BLAST results are available for this feature:
BLAST of FC925249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
TPSDA_ABIGR7.744e-3135.86Limonene synthase, chloroplastic OS=Abies grandis ... [more]
TPSD2_ABIGR1.725e-3034.73Myrcene synthase, chloroplastic OS=Abies grandis G... [more]
HUMS_ARATH1.118e-2931.20Alpha-humulene/(-)-(E)-beta-caryophyllene synthase... [more]
AMS1_ARTAN1.460e-2933.91Amorpha-4,11-diene synthase OS=Artemisia annua GN=... [more]
TPSD8_ABIGR3.254e-2935.83Beta-phellandrene synthase, chloroplastic OS=Abies... [more]
TPSDB_ABIGR7.248e-2935.09Limonene/alpha-pinene synthase, chloroplastic OS=A... [more]
TPSD9_ABIGR1.367e-2734.29Terpinolene synthase, chloroplastic OS=Abies grand... [more]
TPSD5_ABIGR9.169e-2434.05Gamma-humulene synthase OS=Abies grandis GN=ag5 PE... [more]
TASY_TAXCH1.198e-2332.08Taxadiene synthase OS=Taxus chinensis GN=TDC1 PE=2... [more]
TASY_TAXBR1.564e-2332.08Taxadiene synthase OS=Taxus brevifolia GN=TDC1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YG05FM1 TF Citrus clementina cDNA clone KN0AAP8YG05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925249 ID=FC925249; Name=FC925249; organism=Citrus clementina; type=EST; length=724bp
GAAGGATACAGGTCTTGGAGAGAAATTGAGCTTTGCGAGGAACAGGTTGG
TAGCGTCCTTCTTATGGAGCATGGGGATCGCGTTTGAGCCTCAATTCGCC
TACTGCAGGAGAGTGCTCACAATCTCGATAGCCCTAATTACAGTGATTGA
TGACATTTATGATGTCTATGGAACATTGGATGAACTTGAGATATTCACTG
ATGCTGTTGCGAGGTGGGACATCAATTATGCTTTGAAGCACCTTCCGGGC
TATATGAAAATGTGTTTTCTTGCCCTTTACAACTTTGTTAATGAATTTGC
TTATTACGTTCTCAAACAACAGGATTTTGATATGCTTCTGAGCATAAAAC
ATGCATGGCTTGGCTTAATACAAGCCTACTTGGTGGAGGCGAAATGGTAC
CATAGCAAGTACACACCGAAACTGGAAGAATACTTGGAAAATGGATTGGT
ATCAATAACGGGCCCTTTAATTATAACGATTTCATATCTTTCTGGTACAA
ATCCAATCATTAAGAAGGAACTGGAATTTCTAGAAAGTAATCCAGATATA
GTTCACTGGTCATCCAAGATTTTCCGTCTGCAAGATGATTTGGGAACTTC
ATCGGACGAGATACAGAGAGGGGATGTTCCGAAATCAATCCAGTGTTACA
TGCATGAAACTGGTGCCTCGGAGGAAGTTGCTCGTGAACACATCAAGGAT
ATGATGAGACAGATGTGGAAGAAG
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