FC925249

Overview
NameFC925249
Unique NameFC925249
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925249 vs. ExPASy Swiss-Prot
Match: TASY_TAXBA (Taxadiene synthase OS=Taxus baccata GN=TDC1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.564e-23
Identity = 77/240 (32.08%), Postives = 120/240 (50.00%), Query Frame = 2
Query:    2 KDTGLGEKLSFARNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKHAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSI-TGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIF-------RLQDDLGTSSDEIQRGDVPKSIQCYMHET-GASEEVAREHI 694
            K++G+ + ++F R+R+   +  S    FEP+++  R   T    L  + DD+ D++ TLDEL+ FT+ V RWD +  L  +P  M+ CF   +  + E    V+K Q  DML  I+  W      Y+ E +W  + Y P  EEYL+   +S+  GP  +    L G   ++K ++       + VH+ S +F       RL +D  T   E  RG     I CYM +  GA+EE A +HI
Sbjct:  567 KESGMAD-INFTRHRVAEVYFSSA--TFEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSL-LHEIPECMQTCFKVWFKLMEEVNNDVVKVQGRDMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILLMG--ELVKDDV------VEKVHYPSNMFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNPGATEEDAIKHI 794          
BLAST of FC925249 vs. ExPASy Swiss-Prot
Match: KSL3_ORYSJ (Ent-kaurene synthase-like 3 OS=Oryza sativa subsp. japonica GN=KSL3 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.239e-20
Identity = 69/233 (29.61%), Postives = 115/233 (49.36%), Query Frame = 2
Query:   23 KLSFARNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKHAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSIT-GPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGAS---EEVAREHIKDMMR 709
            +L FAR +    +L + G  F+P+ +  R    I+  L TV+DD +DV G+ +ELE     V  WD ++  +     +++ F A++N VN+    V   Q  D+   +   WL L+++ + E +W  S Y P  EEY+EN  ++   GP+++   YL G  P I + +       ++    S   RL +D+ T   E   G V  S+   + ++G S   EE  RE +K + R
Sbjct:  433 ELKFARQKSAYFYLSAAGTVFDPEMSDARIWWAINGVLTTVVDDFFDVGGSREELENLISLVEMWDEHHKEELYSEQVEIVFFAIFNSVNQLGAKVSAVQGRDVTKHLIEIWLDLLRSMMTEVEWRISNYVPTPEEYMENAAMTFALGPIVLPALYLVG--PKIPESVVRDSEYNELFRLMSTCGRLLNDVQTYEREDGEGKV-NSVSLLVIQSGGSVSIEEARREIMKPIER 662          
BLAST of FC925249 vs. ExPASy Swiss-Prot
Match: BARS_ARATH (Alpha-barbatene synthase OS=Arabidopsis thaliana GN=BS PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.150e-20
Identity = 66/229 (28.82%), Postives = 112/229 (48.91%), Query Frame = 2
Query:   38 RNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKHAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKE-LEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVAREHIKDMMRQMWK 721
            R R V ++  ++ + FEPQF+  R +      +IT +DD  D YG++ E+E   D + RWD +Y +++L G+MK  F  +     E+   +  Q    +L  +   +  + +  L   KW    + P  +EY+E+G   I     I  S + G   I KKE  E+L S P +V       RL DD+    +++++G    ++  YM+E G ++E A   ++ M   M K
Sbjct:  273 RERTVETWFAALMMYFEPQFSLGRIMSAKLYLVITFLDDACDTYGSISEVESLADCLERWDPDY-MENLQGHMKTAFKFVMYLFKEYEEILRSQGRSFVLEKMIEEFKIIARKNLELVKWARGGHVPSFDEYIESGGAEIGTYATIACS-IMGLGEIGKKEAFEWLISRPKLVRILGAKTRLMDDIADFEEDMEKGYTANALNYYMNEHGVTKEEASRELEKMNGDMNK 499          
BLAST of FC925249 vs. ExPASy Swiss-Prot
Match: KSL7_ORYSJ (Ent-cassa-12,15-diene synthase OS=Oryza sativa subsp. japonica GN=KSL7 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.800e-19
Identity = 65/237 (27.43%), Postives = 109/237 (45.99%), Query Frame = 2
Query:    2 KDTGLGEKLSFARNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKHAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSI-TGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVAREHIKDMMR 709
            KD  L ++L FAR ++   +L      F P+  Y R     +  L  VIDD++DV G   E E     + +W+     ++    +K+ F ALYN VNE        Q  D+   +   WL +++   VEA+W  S++ P  EEY+E+G+VS+  G  +++  +L G    + + +  LE   ++        RL +D+     E   G +   +   +H +G S  V     + M R
Sbjct:  528 KDNRL-DQLHFARQKITYCYLSGAATTFRPEMGYARTSWARTAWLTAVIDDLFDVGGLEQEQENLLALMEKWEEPGEDEYYSEDVKIVFQALYNTVNEIGAKASALQGHDVTKYLVDVWLHVVRCMKVEAEWQRSQHLPTFEEYMESGMVSLGQGCTVMSALFLIGEK--LPEGIVELEEYDELFRLMGTCGRLLNDIRGIEREESDGKMTNGVSLLVHASGGSMSVDEAKTEVMKR 761          
BLAST of FC925249 vs. ExPASy Swiss-Prot
Match: KSL7_ORYSI (Ent-cassa-12,15-diene synthase OS=Oryza sativa subsp. indica GN=KSL7 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.800e-19
Identity = 65/237 (27.43%), Postives = 109/237 (45.99%), Query Frame = 2
Query:    2 KDTGLGEKLSFARNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKHAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSI-TGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVAREHIKDMMR 709
            KD  L ++L FAR ++   +L      F P+  Y R     +  L  VIDD++DV G   E E     + +W+     ++    +K+ F ALYN VNE        Q  D+   +   WL +++   VEA+W  S++ P  EEY+E+G+VS+  G  +++  +L G    + + +  LE   ++        RL +D+     E   G +   +   +H +G S  V     + M R
Sbjct:  529 KDNRL-DQLHFARQKITYCYLSGAATTFRPEMGYARTSWARTAWLTAVIDDLFDVGGLEQEQENLLALMEKWEEPGEDEYYSEDVKIVFQALYNTVNEIGAKASALQGHDVTKYLVDVWLHVVRCMKVEAEWQRSQHLPTFEEYMESGMVSLGQGATVMSALFLIGEK--LPEGVVELEEYDEMFRLMGTCGRLLNDIRGIEREESDGKMTNGVSLLVHASGGSMSVDEAKTEVMKR 762          
BLAST of FC925249 vs. ExPASy Swiss-Prot
Match: KSL2_ORYSJ (Ent-kaurene synthase-like 2 OS=Oryza sativa subsp. japonica GN=KSL2 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.584e-18
Identity = 61/235 (25.96%), Postives = 111/235 (47.23%), Query Frame = 2
Query:   20 EKLSFARNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKHAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSIT-GPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVAREHIKDMMRQMWK 721
            ++L FAR +L   +  +    F P+ +  R +   +  L TV+DD +DV G+ +ELE     V +WD N   ++    +++ F A+Y   N+        Q  D+   +   W  L+++ + E +W  S+Y P  EEY+EN +V+   GP+++   YL G  P +   +   +   ++    SK  RL +D+ +   E  +G +       +H  G+      E +K + R + K
Sbjct:  424 DQLQFARQKLDYFYFSAAATIFTPELSDVRILWAKNGVLTTVVDDFFDVGGSKEELENLVALVEKWDKNDKTEYYSEQVEIVFSAIYTSTNQLGSMASVVQGRDVTKHLVEIWQELLRSMMTEVEWRQSRYVPTAEEYMENAVVTFALGPVVLPALYLVG--PKMPDSVIRSQECSELFRLMSKCGRLLNDVQSYEREGSQGKLNSVSLLALHSGGSVS--MEEAVKQIQRPIEK 654          
BLAST of FC925249 vs. ExPASy Swiss-Prot
Match: KSB_ARATH (Ent-kaur-16-ene synthase, chloroplastic OS=Arabidopsis thaliana GN=GA2 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.408e-18
Identity = 56/200 (28.00%), Postives = 101/200 (50.50%), Query Frame = 2
Query:   20 EKLSFARNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKHAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSIT-GPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQ 616
            ++L FAR +L   +       F P+ +  R        L TV+DD +DV G+ +ELE     V +WD+N   ++   ++++ F  L + + E        Q  ++   I   WL L+++ L EA+W   K TP LE+Y+EN  +S   GP+++  +YL G  P+ +K ++         H  +++++L   +G   ++IQ
Sbjct:  488 QELKFARQKLAYCYFSGAATLFSPELSDARISWAKGGVLTTVVDDFFDVGGSKEELENLIHLVEKWDLNGVPEYSSEHVEIIFSVLRDTILETGDKAFTYQGRNVTHHIVKIWLDLLKSMLREAEWSSDKSTPSLEDYMENAYISFALGPIVLPATYLIGP-PLPEKTVD--------SHQYNQLYKLVSTMGRLLNDIQ 678          
BLAST of FC925249 vs. ExPASy Swiss-Prot
Match: KSL4_ORYSJ (Syn-pimara-7,15-diene synthase OS=Oryza sativa subsp. japonica GN=KSL4 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.675e-17
Identity = 58/202 (28.71%), Postives = 95/202 (47.03%), Query Frame = 2
Query:   20 EKLSFARNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKHAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSIT-GPLIITISYLSGTN--PIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQ 616
            ++L F R  L+ S+L +       + +  R     SIAL  V DD +DV  + +E E     V +WD  + ++     +K  F ALY+ VN+        Q+ D+      +WL  +++   +A+W  SKY P +EEY++N +V+   GP I+   Y  G N    I K  E+            ++FRL +  G   ++IQ
Sbjct:  548 DQLEFTRKNLINSYLSAAATISPYELSDARIACAKSIALTLVADDFFDVGSSKEEQENLISLVEKWDQYHKVEFYSENVKAVFFALYSTVNQLGAMASAVQNRDVTKYNVESWLDYLRSLATDAEWQRSKYVPTMEEYMKNSIVTFALGPTILIALYFMGQNLWEDIVKNAEY-----------DELFRLMNTCGRLQNDIQ 738          
BLAST of FC925249 vs. ExPASy Swiss-Prot
Match: KSL4_ORYSI (Syn-pimara-7,15-diene synthase OS=Oryza sativa subsp. indica GN=KSL4 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.675e-17
Identity = 58/202 (28.71%), Postives = 95/202 (47.03%), Query Frame = 2
Query:   20 EKLSFARNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKHAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSIT-GPLIITISYLSGTN--PIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQ 616
            ++L F R  L+ S+L +       + +  R     SIAL  V DD +DV  + +E E     V +WD  + ++     +K  F ALY+ VN+        Q+ D+      +WL  +++   +A+W  SKY P +EEY++N +V+   GP I+   Y  G N    I K  E+            ++FRL +  G   ++IQ
Sbjct:  546 DQLEFTRKNLINSYLSAAATISPYELSDARIACAKSIALTLVADDFFDVGSSKEEQENLISLVEKWDQYHKVEFYSENVKAVFFALYSTVNQLGAMASAVQNRDVTKYNVESWLDYLRSLATDAEWQRSKYVPTMEEYMKNSIVTFALGPTILIALYFMGQNLWEDIVKNAEY-----------DELFRLMNTCGRLQNDIQ 736          
BLAST of FC925249 vs. ExPASy Swiss-Prot
Match: KS1_ORYSJ (Ent-kaur-16-ene synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=KS1 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.857e-17
Identity = 59/227 (25.99%), Postives = 108/227 (47.58%), Query Frame = 2
Query:   20 EKLSFARNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKHAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSIT-GPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVAREHIK 697
            ++L FAR +L   +L +    F  + +  R     +  L TV+DD +D+ G+ +ELE     V +WD  +  +     +++ F A+Y  VN+        Q  D+   +   WL L+++ + EA+W  +KY P +EEY+ N +VS   GP+++   Y  G  P +++++       ++    S   RL +D      E   G +  S+   +H +G S  +    +K
Sbjct:  453 DQLPFARQKLTYCYLSAAATIFPRELSEARIAWAKNGVLTTVVDDFFDLGGSKEELENLIALVEKWD-GHQEEFYSEQVRIVFSAIYTTVNQLGAKASALQGRDVTKHLTEIWLCLMRSMMTEAEWQRTKYVPTMEEYMANAVVSFALGPIVLPTLYFVG--PKLQEDVVRDHEYNELFRLMSTCGRLLNDSQGFERESLEGKL-NSVSLLVHHSGGSISIDEAKMK 675          
The following BLAST results are available for this feature:
BLAST of FC925249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
TASY_TAXBA1.564e-2332.08Taxadiene synthase OS=Taxus baccata GN=TDC1 PE=3 S... [more]
KSL3_ORYSJ1.239e-2029.61Ent-kaurene synthase-like 3 OS=Oryza sativa subsp.... [more]
BARS_ARATH6.150e-2028.82Alpha-barbatene synthase OS=Arabidopsis thaliana G... [more]
KSL7_ORYSJ6.800e-1927.43Ent-cassa-12,15-diene synthase OS=Oryza sativa sub... [more]
KSL7_ORYSI6.800e-1927.43Ent-cassa-12,15-diene synthase OS=Oryza sativa sub... [more]
KSL2_ORYSJ2.584e-1825.96Ent-kaurene synthase-like 2 OS=Oryza sativa subsp.... [more]
KSB_ARATH4.408e-1828.00Ent-kaur-16-ene synthase, chloroplastic OS=Arabido... [more]
KSL4_ORYSJ1.675e-1728.71Syn-pimara-7,15-diene synthase OS=Oryza sativa sub... [more]
KSL4_ORYSI1.675e-1728.71Syn-pimara-7,15-diene synthase OS=Oryza sativa sub... [more]
KS1_ORYSJ2.857e-1725.99Ent-kaur-16-ene synthase, chloroplastic OS=Oryza s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YG05FM1 TF Citrus clementina cDNA clone KN0AAP8YG05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925249 ID=FC925249; Name=FC925249; organism=Citrus clementina; type=EST; length=724bp
GAAGGATACAGGTCTTGGAGAGAAATTGAGCTTTGCGAGGAACAGGTTGG
TAGCGTCCTTCTTATGGAGCATGGGGATCGCGTTTGAGCCTCAATTCGCC
TACTGCAGGAGAGTGCTCACAATCTCGATAGCCCTAATTACAGTGATTGA
TGACATTTATGATGTCTATGGAACATTGGATGAACTTGAGATATTCACTG
ATGCTGTTGCGAGGTGGGACATCAATTATGCTTTGAAGCACCTTCCGGGC
TATATGAAAATGTGTTTTCTTGCCCTTTACAACTTTGTTAATGAATTTGC
TTATTACGTTCTCAAACAACAGGATTTTGATATGCTTCTGAGCATAAAAC
ATGCATGGCTTGGCTTAATACAAGCCTACTTGGTGGAGGCGAAATGGTAC
CATAGCAAGTACACACCGAAACTGGAAGAATACTTGGAAAATGGATTGGT
ATCAATAACGGGCCCTTTAATTATAACGATTTCATATCTTTCTGGTACAA
ATCCAATCATTAAGAAGGAACTGGAATTTCTAGAAAGTAATCCAGATATA
GTTCACTGGTCATCCAAGATTTTCCGTCTGCAAGATGATTTGGGAACTTC
ATCGGACGAGATACAGAGAGGGGATGTTCCGAAATCAATCCAGTGTTACA
TGCATGAAACTGGTGCCTCGGAGGAAGTTGCTCGTGAACACATCAAGGAT
ATGATGAGACAGATGTGGAAGAAG
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