FC925257

Overview
NameFC925257
Unique NameFC925257
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length498
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925257 vs. ExPASy Swiss-Prot
Match: GPX2_ARATH (Probable glutathione peroxidase 2 OS=Arabidopsis thaliana GN=GPX2 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.580e-15
Identity = 43/101 (42.57%), Postives = 57/101 (56.44%), Query Frame = 2
Query:  110 QNPESIFDLSVKDARGHEVDLSTYKG---------------------------------LEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKVDM 313
            ++P+SI+D +VKD  G++V L  YKG                                 LEILAFPCNQF  +EPG+N++I   VCTRFK+EFPIF+KVD+
Sbjct:    4 ESPKSIYDFTVKDIGGNDVSLDQYKGKTLLVVNVASKCGLTDANYKELNVLYEKYKEQGLEILAFPCNQFLGQEPGNNEEIQQTVCTRFKAEFPIFDKVDV 104          
BLAST of FC925257 vs. ExPASy Swiss-Prot
Match: GPX1_PEA (Phospholipid hydroperoxide glutathione peroxidase, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.320e-14
Identity = 32/44 (72.73%), Postives = 40/44 (90.91%), Query Frame = 2
Query:  182 KGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKVDM 313
            KGLE+LAFPCNQFG +EPGSN++I  F CT+FK+EFPIF+KVD+
Sbjct:  131 KGLEVLAFPCNQFGMQEPGSNEEIKQFACTKFKAEFPIFDKVDV 174          
BLAST of FC925257 vs. ExPASy Swiss-Prot
Match: GPX7_ARATH (Putative glutathione peroxidase 7, chloroplastic OS=Arabidopsis thaliana GN=GPX7 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.958e-14
Identity = 41/98 (41.84%), Postives = 52/98 (53.06%), Query Frame = 2
Query:  119 ESIFDLSVKDARGHEVDLSTYKG---------------------------------LEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKVDM 313
            +S+ D +VKD  G++V L  +KG                                  EILAFPCNQFG +EPGSN +I  F CTRFK+EFPIF+KVD+
Sbjct:   74 KSVHDFTVKDIDGNDVSLDKFKGKPLLIVNVASRCGLTSSNYSELSQLYEKYKNQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDV 171          
BLAST of FC925257 vs. ExPASy Swiss-Prot
Match: GPX1_ARATH (Phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic OS=Arabidopsis thaliana GN=GPX1 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.504e-13
Identity = 32/44 (72.73%), Postives = 38/44 (86.36%), Query Frame = 2
Query:  182 KGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKVDM 313
            +G EILAFPCNQFG +EPGSN +I  F CTRFK+EFPIF+KVD+
Sbjct:  131 QGFEILAFPCNQFGFQEPGSNSEIKQFACTRFKAEFPIFDKVDV 174          
BLAST of FC925257 vs. ExPASy Swiss-Prot
Match: GPX3_ARATH (Probable glutathione peroxidase 3, mitochondrial OS=Arabidopsis thaliana GN=GPX3 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.749e-13
Identity = 39/101 (38.61%), Postives = 54/101 (53.47%), Query Frame = 2
Query:  110 QNPESIFDLSVKDARGHEVDLSTY---------------------------------KGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKVDM 313
            Q+  SI+++SVKD  G +V LS +                                 +G EILAFPCNQFG +EPGSN +I + VC  FK+EFPIF+K+++
Sbjct:   43 QSSTSIYNISVKDIEGKDVSLSKFTGKVLLIVNVASKCGLTHGNYKEMNILYAKYKTQGFEILAFPCNQFGSQEPGSNMEIKETVCNIFKAEFPIFDKIEV 143          
BLAST of FC925257 vs. ExPASy Swiss-Prot
Match: GPX4_HELAN (Probable phospholipid hydroperoxide glutathione peroxidase OS=Helianthus annuus GN=GPXHA-2 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.663e-12
Identity = 38/92 (41.30%), Postives = 49/92 (53.26%), Query Frame = 2
Query:  137 SVKDARGHEVDLSTYKG---------------------------------LEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKVDM 313
            S KD +G +V+LS YKG                                  EILAFPCNQFG +EPGSN++I  F CTRFK+E+P+F KV++
Sbjct:   26 SDKDVKGQDVELSKYKGKVLLIVNVASQCGFTNSNYPELTTLYQKYKDQGFEILAFPCNQFGGQEPGSNEEIQVFACTRFKAEYPVFSKVNV 117          
BLAST of FC925257 vs. ExPASy Swiss-Prot
Match: GPX5_ARATH (Probable glutathione peroxidase 5 OS=Arabidopsis thaliana GN=GPX5 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.987e-11
Identity = 35/96 (36.46%), Postives = 49/96 (51.04%), Query Frame = 2
Query:  119 ESIFDLSVKDARGHEVDLSTYKG---------------------------------LEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKV 307
            +SI   +VKD+ G EVDLS Y+G                                   +LAFPCNQF  +EPG++++   F CTRFK+E+P+F+KV
Sbjct:   12 KSIHQFTVKDSSGKEVDLSVYQGKVLLVVNVASKCGFTESNYTQLTELYRKYKDQGFVVLAFPCNQFLSQEPGTSEEAHQFACTRFKAEYPVFQKV 107          
The following BLAST results are available for this feature:
BLAST of FC925257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
GPX2_ARATH3.580e-1542.57Probable glutathione peroxidase 2 OS=Arabidopsis t... [more]
GPX1_PEA2.320e-1472.73Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX7_ARATH3.958e-1441.84Putative glutathione peroxidase 7, chloroplastic O... [more]
GPX1_ARATH1.504e-1372.73Phospholipid hydroperoxide glutathione peroxidase ... [more]
GPX3_ARATH9.749e-1338.61Probable glutathione peroxidase 3, mitochondrial O... [more]
GPX4_HELAN1.663e-1241.30Probable phospholipid hydroperoxide glutathione pe... [more]
GPX5_ARATH6.987e-1136.46Probable glutathione peroxidase 5 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YB08FM1 TF Citrus clementina cDNA clone KN0AAP11YB08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925257 ID=FC925257; Name=FC925257; organism=Citrus clementina; type=EST; length=498bp
GCTTCCTCTCCGTTCCGTCGTGACTGTAGTCAACTTCATTTTTGTCAGAA
ACCTTTTCCTTCGTCTTTTAAAGAGCAGAGCAGATAATAGGATGACAAGC
CAGTTTATACAAAACCCGGAGTCAATTTTTGACTTATCTGTCAAGGATGC
CAGAGGCCATGAGGTAGATCTCAGCACATACAAAGGCTTAGAGATTCTGG
CATTTCCATGCAATCAATTTGGTGAAGAGGAACCAGGAAGTAATGATCAG
ATCGCAGATTTTGTCTGCACTCGCTTCAAATCAGAGTTTCCAATTTTTGA
AAAGGTAGATATGTGATATCTAGTTGCTCTTAAATCTGAATGCTCCTGAG
TCCTGAAGTGCTCGGCAATACAAGGGTTGTCTTAGATATTGACTATTAGT
TCTAGATTTGCATGTATTGTGTCATTTTAGTTACTCTACTAGCTTTAACC
AAATCGGTTTTCCTGTCATTTGGATTGTTGACTAGTAATGTTGGACAT
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