FC925268

Overview
NameFC925268
Unique NameFC925268
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length348
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: BSAA_BACHD (Glutathione peroxidase homolog bsaA OS=Bacillus halodurans GN=bsaA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.913e-31
Identity = 60/110 (54.55%), Postives = 80/110 (72.73%), Query Frame = 2
Query:   14 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGDVVERYAPTTSPLSIE 343
            Y EL  LY+ YK+QG  +L FP NQF  QEPGD+ +I  F    +   FPIF+KV VNG  A PL+++L S +GGLF + IKWNF+KFL+D+ G+VV+RYAP+TSP+ I+
Sbjct:   41 YEELQILYETYKDQGFTVLGFPSNQFMNQEPGDHNEIAAFCERNYGVSFPIFEKVKVNGKEAHPLFQYLTSQQGGLFTEKIKWNFTKFLIDRSGNVVKRYAPSTSPIKIK 150          
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: GPX4_PONPY (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Pongo pygmaeus GN=GPX4 PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 2.439e-30
Identity = 66/117 (56.41%), Postives = 84/117 (71.79%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK-SSKG-GLFGDSIKWNFSKFLVDKEGDVVERYAPTTSPLSIEK 346
            T  NYT+L  L+ +Y   GL ILAFPCNQFG QEPG NE+I+EFA   +  +F +F K+ VNGD+A PL+K +K   KG G+ G++IKWNF+KFL+DK G VV+RY P   PL IEK
Sbjct:   76 TEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEK 191          
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: GPX4_HUMAN (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Homo sapiens GN=GPX4 PE=1 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 2.439e-30
Identity = 66/117 (56.41%), Postives = 84/117 (71.79%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK-SSKG-GLFGDSIKWNFSKFLVDKEGDVVERYAPTTSPLSIEK 346
            T  NYT+L  L+ +Y   GL ILAFPCNQFG QEPG NE+I+EFA   +  +F +F K+ VNGD+A PL+K +K   KG G+ G++IKWNF+KFL+DK G VV+RY P   PL IEK
Sbjct:   76 TEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEK 191          
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: GPX2_YEAST (Glutathione peroxidase 2 OS=Saccharomyces cerevisiae GN=GPX2 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.432e-30
Identity = 61/112 (54.46%), Postives = 76/112 (67.86%), Query Frame = 2
Query:   14 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFG-DSIKWNFSKFLVDKEGDVVERYAPTTSPLSIEK 346
            Y EL +LY KY+++G  IL FPCNQFG QEPG +EQI EF    +   FPI  K+DVNG NA  +Y +LKS K GL G   IKWNF KFLVD  G VV+R++  T P S+++
Sbjct:   43 YKELEELYKKYQDKGFVILGFPCNQFGKQEPGSDEQITEFCQLNYGVTFPIMKKIDVNGSNADSVYNYLKSQKAGLLGFKGIKWNFEKFLVDSNGKVVQRFSSLTKPSSLDQ 154          
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: GPX4_MACFU (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Macaca fuscata fuscata GN=GPX4 PE=2 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 7.095e-30
Identity = 65/117 (55.56%), Postives = 84/117 (71.79%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK-SSKG-GLFGDSIKWNFSKFLVDKEGDVVERYAPTTSPLSIEK 346
            T  NYT+L  L+ +Y   G+ ILAFPCNQFG QEPG NE+I+EFA   +  +F +F K+ VNGD+A PL+K +K   KG G+ G++IKWNF+KFL+DK G VV+RY P   PL IEK
Sbjct:   76 TEVNYTQLVDLHARYAECGVRILAFPCNQFGKQEPGSNEKIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEK 191          
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: GPX4_BOVIN (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Bos taurus GN=GPX4 PE=2 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 7.095e-30
Identity = 65/117 (55.56%), Postives = 84/117 (71.79%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK-SSKG-GLFGDSIKWNFSKFLVDKEGDVVERYAPTTSPLSIEK 346
            T+ NYT+L  L+ +Y   GL ILAFPCNQFG QEPG N +I+EFA   +  +F +F K+ VNGD+A PL+K +K   KG G+ G++IKWNF+KFL+DK G VV+RY P   PL IEK
Sbjct:   76 TDVNYTQLVDLHARYAECGLRILAFPCNQFGRQEPGSNAEIKEFA-AGYNVKFDLFSKICVNGDDAHPLWKWMKVQPKGRGMLGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEK 191          
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: GPX3_YEAST (Peroxiredoxin HYR1 OS=Saccharomyces cerevisiae GN=HYR1 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.266e-30
Identity = 60/112 (53.57%), Postives = 75/112 (66.96%), Query Frame = 2
Query:   14 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFG-DSIKWNFSKFLVDKEGDVVERYAPTTSPLSIEK 346
            Y EL  LY +YK++G  I+ FPCNQFG QEPG +E+I +F    +   FPI  K+DVNG N  P+YK LKS K G+ G   IKWNF KFLVDK+G V ERY+  T P S+ +
Sbjct:   42 YKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSE 153          
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: GPX4_CEBAP (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Cebus apella GN=GPX4 PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 1.210e-29
Identity = 65/117 (55.56%), Postives = 83/117 (70.94%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK-SSKG-GLFGDSIKWNFSKFLVDKEGDVVERYAPTTSPLSIEK 346
            T  NYT+L  L+ +Y   GL ILAFPCNQFG QEPG NE+I+EFA   +  +F +F K+ VNGD+A PL+K +K   KG G+ G++IKWNF+KFL+DK G VV+RY P   P  IEK
Sbjct:   76 TEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPQVIEK 191          
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: BSAA_BACSU (Glutathione peroxidase homolog bsaA OS=Bacillus subtilis GN=bsaA PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.581e-29
Identity = 59/113 (52.21%), Postives = 78/113 (69.03%), Query Frame = 2
Query:    8 SNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFG-DSIKWNFSKFLVDKEGDVVERYAPTTSPLSIE 343
            S   +L +LYD Y+ +GLEIL FPCNQF  QEPG+   IQEF  T +   FP+F KVDVNG NA PL+ +L     G+ G  +IKWNF+KF+VD+ G++V RY+P T+P  +E
Sbjct:   39 SQLKQLQELYDTYQQEGLEILGFPCNQFMNQEPGEEADIQEFCETNYGVTFPMFSKVDVNGKNAHPLFVYLTEHAKGMLGTKAIKWNFTKFIVDRNGEIVGRYSPNTNPKELE 151          
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: GPX4_CALJA (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Callithrix jacchus GN=GPX4 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 2.064e-29
Identity = 66/117 (56.41%), Postives = 82/117 (70.09%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK-SSKG-GLFGDSIKWNFSKFLVDKEGDVVERYAPTTSPLSIEK 346
            T  NYT+L  L+ +Y   GL ILAFPCNQFG QEPG NE+I+EFA   +  +F +F K+ VNGD+A PL+K +K   KG G  G++IKWNF+KFLVDK G VV+RY P   P  IEK
Sbjct:   76 TQVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGTLGNAIKWNFTKFLVDKNGCVVKRYGPMEEPQVIEK 191          
The following BLAST results are available for this feature:
BLAST of FC925268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
BSAA_BACHD4.913e-3154.55Glutathione peroxidase homolog bsaA OS=Bacillus ha... [more]
GPX4_PONPY2.439e-3056.41Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX4_HUMAN2.439e-3056.41Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX2_YEAST5.432e-3054.46Glutathione peroxidase 2 OS=Saccharomyces cerevisi... [more]
GPX4_MACFU7.095e-3055.56Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX4_BOVIN7.095e-3055.56Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX3_YEAST9.266e-3053.57Peroxiredoxin HYR1 OS=Saccharomyces cerevisiae GN=... [more]
GPX4_CEBAP1.210e-2955.56Phospholipid hydroperoxide glutathione peroxidase,... [more]
BSAA_BACSU1.581e-2952.21Glutathione peroxidase homolog bsaA OS=Bacillus su... [more]
GPX4_CALJA2.064e-2956.41Phospholipid hydroperoxide glutathione peroxidase,... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YB13FM1 TF Citrus clementina cDNA clone KN0AAP11YB13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925268 ID=FC925268; Name=FC925268; organism=Citrus clementina; type=EST; length=348bp
GACCAATTCAAACTACACTGAGCTGAGTCAGTTGTACGACAAGTACAAGA
ATCAAGGCTTGGAGATTCTGGCCTTTCCTTGTAATCAGTTTGGAGCTCAA
GAGCCAGGAGACAATGAACAGATTCAAGAATTTGCATGCACTCGCTTTAA
GGCTGAGTTTCCCATATTTGATAAGGTTGATGTTAATGGTGATAATGCTG
CTCCTTTATACAAGCATCTGAAATCCAGCAAAGGTGGACTTTTTGGAGAC
AGCATCAAGTGGAACTTTTCCAAGTTCTTGGTGGATAAGGAGGGGGATGT
TGTTGAGCGTTATGCCCCCACCACTAGCCCTCTGAGCATTGAGAAGGA
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