FC925268

Overview
NameFC925268
Unique NameFC925268
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length348
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: GPX4_HYLLA (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Hylobates lar GN=GPX4 PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 3.521e-29
Identity = 64/117 (54.70%), Postives = 82/117 (70.09%), Query Frame = 2 
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK-SSKG-GLFGDSIKWNFSKFLVDKEGDVVERYAPTTSPLSIEK 346
            T  NYT+L  L+ +Y   GL  LAFPCNQFG QEPG NE+I+EFA   +  +F +F K+ VNGD+A PL+K +K   KG G+ G++IKWNF+KFL DK G VV+RY P   PL +EK
Sbjct:   76 TEVNYTQLVDLHARYAECGLRFLAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLFDKNGCVVKRYGPMEEPLVLEK 191
[Close]
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: GPO_LACLA (Glutathione peroxidase OS=Lactococcus lactis subsp. lactis GN=gpo PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 3.521e-29
Identity = 56/108 (51.85%), Postives = 75/108 (69.44%), Query Frame = 2 
Query:   23 LSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGDVVERYAPTTSPLSIEK 346
            L +LY+ YK+QGLEIL FPCNQF  Q+ G+N +I EF    +   FP+F K+ VNG  A PLY+ LK    G    +IKWNF+KFL+D+EG+V+ER+AP T P  +E+
Sbjct:   44 LEKLYENYKDQGLEILGFPCNQFVNQDAGENSEINEFCQLNYGVTFPMFQKIKVNGKEAHPLYQFLKKEAKGALSGTIKWNFTKFLIDREGNVIERFAPKTEPKEMEE 151
[Close]
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: GPX41_MOUSE (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Mus musculus GN=Gpx4 PE=1 SV=4)

HSP 1 Score: 126.331 bits (316), Expect = 4.599e-29
Identity = 63/117 (53.85%), Postives = 84/117 (71.79%), Query Frame = 2 
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK-SSKG-GLFGDSIKWNFSKFLVDKEGDVVERYAPTTSPLSIEK 346
            T+ NYT+L  L+ +Y   GL ILAFPCNQFG QEPG N++I+EFA   +  +F ++ K+ VNGD+A PL+K +K   KG G+ G++IKWNF+KFL+DK G VV+RY P   P  IEK
Sbjct:   76 TDVNYTQLVDLHARYAECGLRILAFPCNQFGRQEPGSNQEIKEFA-AGYNVKFDMYSKICVNGDDAHPLWKWMKVQPKGRGMLGNAIKWNFTKFLIDKNGCVVKRYGPMEEPQVIEK 191
[Close]
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: GPX42_RAT (Phospholipid hydroperoxide glutathione peroxidase, nuclear OS=Rattus norvegicus GN=Gpx4 PE=2 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 6.006e-29
Identity = 63/117 (53.85%), Postives = 83/117 (70.94%), Query Frame = 2 
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK-SSKG-GLFGDSIKWNFSKFLVDKEGDVVERYAPTTSPLSIEK 346
            T+ NYT+L  L+ +Y   GL ILAFPCNQFG QEPG N++I+EFA   +   F ++ K+ VNGD+A PL+K +K   KG G+ G++IKWNF+KFL+DK G VV+RY P   P  IEK
Sbjct:  132 TDVNYTQLVDLHARYAECGLRILAFPCNQFGRQEPGSNQEIKEFA-AGYNVRFDMYSKICVNGDDAHPLWKWMKVQPKGRGMLGNAIKWNFTKFLIDKNGCVVKRYGPMEEPQVIEK 247
[Close]
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: GPX41_RAT (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Rattus norvegicus GN=Gpx4 PE=1 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 6.006e-29
Identity = 63/117 (53.85%), Postives = 83/117 (70.94%), Query Frame = 2 
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK-SSKG-GLFGDSIKWNFSKFLVDKEGDVVERYAPTTSPLSIEK 346
            T+ NYT+L  L+ +Y   GL ILAFPCNQFG QEPG N++I+EFA   +   F ++ K+ VNGD+A PL+K +K   KG G+ G++IKWNF+KFL+DK G VV+RY P   P  IEK
Sbjct:   76 TDVNYTQLVDLHARYAECGLRILAFPCNQFGRQEPGSNQEIKEFA-AGYNVRFDMYSKICVNGDDAHPLWKWMKVQPKGRGMLGNAIKWNFTKFLIDKNGCVVKRYGPMEEPQVIEK 191
[Close]
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: BSAA_STAAW (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain MW2) GN=bsaA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.006e-29
Identity = 54/113 (47.79%), Postives = 78/113 (69.03%), Query Frame = 2 
Query:    8 SNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGDVVERYAPTTSPLSIEK 346
            S +  L  LY+KYK+QG  IL FPCNQFG QEPG  E+  +     +   FP+  K+DV G++  PL+++L +++ G F + IKWNF+KFLVD+EG+VV+R+AP   P+ IE+
Sbjct:   40 SQFEGLQSLYEKYKDQGFVILGFPCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFNEKIKWNFTKFLVDREGNVVKRFAPQKKPVQIER 152
[Close]
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: BSAA_STAAS (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain MSSA476) GN=bsaA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.006e-29
Identity = 54/113 (47.79%), Postives = 78/113 (69.03%), Query Frame = 2 
Query:    8 SNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGDVVERYAPTTSPLSIEK 346
            S +  L  LY+KYK+QG  IL FPCNQFG QEPG  E+  +     +   FP+  K+DV G++  PL+++L +++ G F + IKWNF+KFLVD+EG+VV+R+AP   P+ IE+
Sbjct:   40 SQFEGLQSLYEKYKDQGFVILGFPCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFNEKIKWNFTKFLVDREGNVVKRFAPQKKPVQIER 152
[Close]
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: BSAA_STAAR (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain MRSA252) GN=bsaA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.006e-29
Identity = 54/113 (47.79%), Postives = 78/113 (69.03%), Query Frame = 2 
Query:    8 SNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGDVVERYAPTTSPLSIEK 346
            S +  L  LY+KYK+QG  IL FPCNQFG QEPG  E+  +     +   FP+  K+DV G++  PL+++L +++ G F + IKWNF+KFLVD+EG+VV+R+AP   P+ IE+
Sbjct:   40 SQFEGLQSLYEKYKDQGFVILGFPCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFNEKIKWNFTKFLVDREGNVVKRFAPQKKPVQIER 152
[Close]
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: BSAA_STAAN (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain N315) GN=bsaA PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.006e-29
Identity = 54/113 (47.79%), Postives = 78/113 (69.03%), Query Frame = 2 
Query:    8 SNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGDVVERYAPTTSPLSIEK 346
            S +  L  LY+KYK+QG  IL FPCNQFG QEPG  E+  +     +   FP+  K+DV G++  PL+++L +++ G F + IKWNF+KFLVD+EG+VV+R+AP   P+ IE+
Sbjct:   40 SQFEGLQSLYEKYKDQGFVILGFPCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFNEKIKWNFTKFLVDREGNVVKRFAPQKKPVQIER 152
[Close]
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: BSAA_STAAM (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=bsaA PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.006e-29
Identity = 54/113 (47.79%), Postives = 78/113 (69.03%), Query Frame = 2 
Query:    8 SNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGDVVERYAPTTSPLSIEK 346
            S +  L  LY+KYK+QG  IL FPCNQFG QEPG  E+  +     +   FP+  K+DV G++  PL+++L +++ G F + IKWNF+KFLVD+EG+VV+R+AP   P+ IE+
Sbjct:   40 SQFEGLQSLYEKYKDQGFVILGFPCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFNEKIKWNFTKFLVDREGNVVKRFAPQKKPVQIER 152
The following BLAST results are available for this feature:
BLAST of FC925268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
GPX4_HYLLA3.521e-2954.70Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPO_LACLA3.521e-2951.85Glutathione peroxidase OS=Lactococcus lactis subsp... [more]
GPX41_MOUSE4.599e-2953.85Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX42_RAT6.006e-2953.85Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX41_RAT6.006e-2953.85Phospholipid hydroperoxide glutathione peroxidase,... [more]
BSAA_STAAW6.006e-2947.79Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
BSAA_STAAS6.006e-2947.79Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
BSAA_STAAR6.006e-2947.79Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
BSAA_STAAN6.006e-2947.79Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
BSAA_STAAM6.006e-2947.79Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YB13FM1 TF Citrus clementina cDNA clone KN0AAP11YB13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925268 ID=FC925268; Name=FC925268; organism=Citrus clementina; type=EST; length=348bp
GACCAATTCAAACTACACTGAGCTGAGTCAGTTGTACGACAAGTACAAGA
ATCAAGGCTTGGAGATTCTGGCCTTTCCTTGTAATCAGTTTGGAGCTCAA
GAGCCAGGAGACAATGAACAGATTCAAGAATTTGCATGCACTCGCTTTAA
GGCTGAGTTTCCCATATTTGATAAGGTTGATGTTAATGGTGATAATGCTG
CTCCTTTATACAAGCATCTGAAATCCAGCAAAGGTGGACTTTTTGGAGAC
AGCATCAAGTGGAACTTTTCCAAGTTCTTGGTGGATAAGGAGGGGGATGT
TGTTGAGCGTTATGCCCCCACCACTAGCCCTCTGAGCATTGAGAAGGA
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