FC925271

Overview
NameFC925271
Unique NameFC925271
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length583
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925271 vs. ExPASy Swiss-Prot
Match: TMN1_YEAST (Transmembrane 9 superfamily member 1 OS=Saccharomyces cerevisiae GN=EMP70 PE=1 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 3.915e-39
Identity = 84/191 (43.98%), Postives = 110/191 (57.59%), Query Frame = 2
Query:   11 DVAQEETGWKLVHGDVFRPPTNSDLLCVYVGTGVQFFGMMLVTMIFALLGFLSPSN*GGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKK-PAIEDPVKTNKIPRQIPEQAWYMNPIFSIPIGGI 580
            D  QE++GWKL HGDVFR P+ S  L + VG+GVQ F M+  ++ FA LGFLSPS+ G L T M +L+   G    Y S  +YK F G  WK     T +  PG +  I   LN  +    SSG +P  T+F ++ LWF  S+PL + GS +  K+    E P KTN+I RQIP Q WY+  I +  I GI
Sbjct:  344 DDFQEDSGWKLNHGDVFRSPSQSLTLSILVGSGVQLFLMVTCSIFFAALGFLSPSSRGSLATVMFILYALFGFVGSYTSMGIYKFFNGPYWKANLILTPLLVPGAILLIIIALNFFLMFVHSSGVIPASTLFFMVFLWFLFSIPLSFAGSLIARKRCHWDEHPTKTNQIARQIPFQPWYLKTIPATLIAGI 534          
BLAST of FC925271 vs. ExPASy Swiss-Prot
Match: TMN2_YEAST (Transmembrane 9 superfamily member 2 OS=Saccharomyces cerevisiae GN=TMN2 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.645e-37
Identity = 79/187 (42.25%), Postives = 112/187 (59.89%), Query Frame = 2
Query:   23 EETGWKLVHGDVFRPPTNSDLLCVYVGTGVQFFGMMLVTMIFALLGFLSPSN*GGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKK-PAIEDPVKTNKIPRQIPEQAWYMNPIFSIPIGGI 580
            E++GWKL HGDVFR P+ S LL + VG+G+Q F M++ ++ FA +G +SP + G L T M +L+   G    YAS  +YK F+G  WK     T I  PG +  +  ++N  +    SSG +P  ++F +I+LWF +SVPL + GS V  K+    E P KTN+I RQIP Q WY+    +  I GI
Sbjct:  353 EDSGWKLGHGDVFRTPSKSMLLSILVGSGMQLFLMVMCSIFFAAVGLVSPVSRGSLPTVMFVLYALFGFVGSYASMGVYKFFRGPYWKANMILTPILLPGAIFLLIVIMNFFLLFAHSSGVIPARSLFFIILLWFLVSVPLSFAGSIVAHKQCNWDEHPTKTNQIARQIPYQPWYLRTAQATLIAGI 539          
BLAST of FC925271 vs. ExPASy Swiss-Prot
Match: YON8_SCHPO (Transmembrane 9 superfamily protein C1105.08 OS=Schizosaccharomyces pombe GN=SPBC1105.08 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 6.250e-37
Identity = 79/190 (41.58%), Postives = 108/190 (56.84%), Query Frame = 2
Query:    8 QDVAQEETGWKLVHGDVFRPPTNSDLLCVYVGTGVQFFGMMLVTMIFALLGFLSPSN*GGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSIPIGG 577
            Q+  QE+ GWKLVHGDVFRPP    L  + +GTG Q   M    ++FA+ G ++PS  G L TA + L++  G  +GY SA  YKL +G   KR    T    PG + A     N + W + SS  VPF +   LI L+   +VPL +VGS +GF+      PV+TN+IPRQIP  + +++   S  IGG
Sbjct:  305 QEDVQEDFGWKLVHGDVFRPPRRPMLFSILLGTGAQLLFMSSGIVLFAIFGIVAPSRRGSLATATVALFIISGFVSGYVSALSYKLMQGMLRKRNLLLTPFVVPGFMLAAALFFNMVFWSKSSSSTVPFSSWLLLIFLYLLFTVPLSFVGSLIGFRSREFVPPVRTNQIPRQIPSHSIWLSSFPSAIIGG 494          
BLAST of FC925271 vs. ExPASy Swiss-Prot
Match: PHG1C_DICDI (Putative phagocytic receptor 1c OS=Dictyostelium discoideum GN=phg1c PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.658e-27
Identity = 59/190 (31.05%), Postives = 97/190 (51.05%), Query Frame = 2
Query:   14 VAQEETGWKLVHGDVFRPPTNSDLLCVYVGTGVQFFGMMLVTMIFALLGFLSPSN*GGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSIPIGGIL 583
            ++ ++ GWK ++ DVFR P N     + +G GVQ    + + M+F++ G  S +  GG+  A +L++ F G+F GY+S R Y +  GT     +  T    P  +  + F+    +W  K +     GT+F ++ +W  + VP   + S+     P  E PV+ N IPR IP   WY N    + +GGI+
Sbjct:  335 LSPDDGGWKSIYADVFRSPNNFMTFSIIIGFGVQIVASLFILMVFSVAGLTSIATPGGMAIASILIFSFTGIFNGYSSMRTYIMLGGTRKLYNSVITTTLIPFTILLLMFIGYFQVWSNKFTYGASIGTVFFILAMWLLVCVPCSLLSSYFVRTWPPAEYPVRINPIPRFIPTAKWYQNQYLHMILGGII 524          
BLAST of FC925271 vs. ExPASy Swiss-Prot
Match: TM9S1_MOUSE (Transmembrane 9 superfamily member 1 OS=Mus musculus GN=Tm9sf1 PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 1.886e-25
Identity = 59/194 (30.41%), Postives = 95/194 (48.97%), Query Frame = 2
Query:    5 TQDVAQEETGWKLVHGDVFRPPTNSDLLCVYVGTGVQFFGMMLVTMIFALLGFLSPSN*GGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPA-IEDPVKTNKIPRQIPEQAWYMNPIFSIPIGGIL 583
            + D  Q + GWK++H DVFR P    LLC  +G G QF  +    ++ ALLG  +    G + +A +LL+      +GY S+  Y+   G  W      T+  F       + V+N++ W   S+ A+P  T+  L+ +W  +  PL  +G   G    +  + P +T  I R+IP Q WY + +  + +GG L
Sbjct:  280 SDDFDQGDNGWKIIHTDVFRFPPYRGLLCAVLGVGAQFLALGTGIIVMALLGMFNVHRHGAINSAAILLYALTCCISGYVSSHFYRQIGGERWVWNIILTSSLFSVPFFLTWSVVNSVHWANGSTQALPATTILLLLTVWLLVGFPLTVIGGIFGKNNASPFDAPCRTKNIAREIPPQPWYKSTVIHMTVGGFL 473          
BLAST of FC925271 vs. ExPASy Swiss-Prot
Match: TM9S1_PONAB (Transmembrane 9 superfamily member 1 OS=Pongo abelii GN=TM9SF1 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.218e-25
Identity = 59/192 (30.73%), Postives = 93/192 (48.44%), Query Frame = 2
Query:   11 DVAQEETGWKLVHGDVFRPPTNSDLLCVYVGTGVQFFGMMLVTMIFALLGFLSPSN*GGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPA-IEDPVKTNKIPRQIPEQAWYMNPIFSIPIGGIL 583
            D  Q + GWK++H DVFR P    LLC  +G G QF  +    ++ ALLG  +    G + +A +LL+      +GY S+  Y+   G  W      T   F       + V+N++ W   S+ A+P  T+  L+ +W  +  PL  +G   G    +  + P +T  I R+IP Q WY + +  + +GG L
Sbjct:  282 DFDQGDNGWKIIHTDVFRFPPYRGLLCAVLGVGAQFLALGTGIIVMALLGMFNVHRHGAINSAAILLYALTCCISGYVSSHFYRQIGGERWVWNIILTTSLFSVPFFLTWSVVNSVHWANGSTQALPATTILLLLTVWLLVGFPLTVIGGIFGKNNASPFDAPCRTKNIAREIPPQPWYKSTVIHMTVGGFL 473          
BLAST of FC925271 vs. ExPASy Swiss-Prot
Match: TM9S1_HUMAN (Transmembrane 9 superfamily member 1 OS=Homo sapiens GN=TM9SF1 PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 3.218e-25
Identity = 59/192 (30.73%), Postives = 93/192 (48.44%), Query Frame = 2
Query:   11 DVAQEETGWKLVHGDVFRPPTNSDLLCVYVGTGVQFFGMMLVTMIFALLGFLSPSN*GGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPA-IEDPVKTNKIPRQIPEQAWYMNPIFSIPIGGIL 583
            D  Q + GWK++H DVFR P    LLC  +G G QF  +    ++ ALLG  +    G + +A +LL+      +GY S+  Y+   G  W      T   F       + V+N++ W   S+ A+P  T+  L+ +W  +  PL  +G   G    +  + P +T  I R+IP Q WY + +  + +GG L
Sbjct:  282 DFDQGDNGWKIIHTDVFRFPPYRGLLCAVLGVGAQFLALGTGIIVMALLGMFNVHRHGAINSAAILLYALTCCISGYVSSHFYRQIGGERWVWNIILTTSLFSVPFFLTWSVVNSVHWANGSTQALPATTILLLLTVWLLVGFPLTVIGGIFGKNNASPFDAPCRTKNIAREIPPQPWYKSTVIHMTVGGFL 473          
BLAST of FC925271 vs. ExPASy Swiss-Prot
Match: TM9S1_BOVIN (Transmembrane 9 superfamily member 1 OS=Bos taurus GN=TM9SF1 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.218e-25
Identity = 59/192 (30.73%), Postives = 93/192 (48.44%), Query Frame = 2
Query:   11 DVAQEETGWKLVHGDVFRPPTNSDLLCVYVGTGVQFFGMMLVTMIFALLGFLSPSN*GGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPA-IEDPVKTNKIPRQIPEQAWYMNPIFSIPIGGIL 583
            D  Q + GWK++H DVFR P    LLC  +G G QF  +    ++ ALLG  +    G + +A +LL+      +GY S+  Y+   G  W      T   F       + V+N++ W   S+ A+P  T+  L+ +W  +  PL  +G   G    +  + P +T  I R+IP Q WY + +  + +GG L
Sbjct:  282 DFDQSDNGWKIIHTDVFRFPPYRGLLCAVLGVGAQFLALGTGIIVMALLGMFNVHRHGAINSAAILLYALTCCISGYVSSHFYRQIGGERWVWNIILTTSLFSVPFFLTWSVVNSVHWANGSTQALPATTILLLLTVWLLVGFPLTVIGGIFGKNNASPFDAPCRTKNIAREIPPQPWYKSTLVHMTVGGFL 473          
BLAST of FC925271 vs. ExPASy Swiss-Prot
Match: PHG1B_DICDI (Putative phagocytic receptor 1b OS=Dictyostelium discoideum GN=phg1b PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.597e-24
Identity = 62/189 (32.80%), Postives = 92/189 (48.68%), Query Frame = 2
Query:   20 QEETGWKLVHGDVFRPPTNSDLLCVYVGTGVQFFGMMLVTMIFALLGFLSPSN*GGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFK-KPAIEDPVKTNKIPRQIPEQAWYMNPIFSIPIGGIL 583
            QE+ GWKLVHGDVFR P   ++   + G G QF  ++   +  +L G   P+N G + TA ++L+      +GY SA++YK   G +W      TA  F   +  +  + N +     S+ A+P  TM  +I +W  +  PL  VG   G +     E P +T   PR++P   WY      I I G L
Sbjct:  266 QEDYGWKLVHGDVFRFPPYKNVFSAFYGIGWQFISIVCGILALSLFGMFYPNNGGNMYTAGIVLYALTSGISGYQSAKMYKNMGGNKWAWNIVLTATLFVAPLFIVVILSNTVAITWHSTVALPILTMIEVITIWLFVGFPLTVVGGIAGRRLSENFEAPCRTKNFPREVPPIQWYRRLPCQILIAGFL 454          
BLAST of FC925271 vs. ExPASy Swiss-Prot
Match: TM9S3_MOUSE (Transmembrane 9 superfamily member 3 OS=Mus musculus GN=Tm9sf3 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.557e-24
Identity = 61/188 (32.45%), Postives = 97/188 (51.60%), Query Frame = 2
Query:   23 EETGWKLVHGDVFRPPTNSDLLCVYVGTGVQFFGMMLVTMIFALLGFLSPSN*GGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIED-PVKTNKIPRQIPEQAWYMNPIFSIPIGGIL 583
            +E GWK VHGDVFRP ++  +    +G+G Q F + L+ +I A++  L     G +++  + ++       GY    LY    G  W +  F  A   P +V    F +N +     +S A+PFGTM A+  + F + +PL  VG+ +G       + P + N +PR IPE+ W+M P   + +GGIL
Sbjct:  268 DEYGWKQVHGDVFRPSSHPLIFSSLIGSGCQIFAVSLIVIIVAMIEDLYTER-GSMLSTAIFVYAATSPVNGYFGGSLYARQGGRRWIKQMFIGAFLIPAMVCGTAFFINFIAIYYHASRAIPFGTMVAVCCICFFVILPLNLVGTILGRNLSGQPNFPCRVNAVPRPIPEKKWFMEPAVIVCLGGIL 454          
The following BLAST results are available for this feature:
BLAST of FC925271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
TMN1_YEAST3.915e-3943.98Transmembrane 9 superfamily member 1 OS=Saccharomy... [more]
TMN2_YEAST1.645e-3742.25Transmembrane 9 superfamily member 2 OS=Saccharomy... [more]
YON8_SCHPO6.250e-3741.58Transmembrane 9 superfamily protein C1105.08 OS=Sc... [more]
PHG1C_DICDI7.658e-2731.05Putative phagocytic receptor 1c OS=Dictyostelium d... [more]
TM9S1_MOUSE1.886e-2530.41Transmembrane 9 superfamily member 1 OS=Mus muscul... [more]
TM9S1_PONAB3.218e-2530.73Transmembrane 9 superfamily member 1 OS=Pongo abel... [more]
TM9S1_HUMAN3.218e-2530.73Transmembrane 9 superfamily member 1 OS=Homo sapie... [more]
TM9S1_BOVIN3.218e-2530.73Transmembrane 9 superfamily member 1 OS=Bos taurus... [more]
PHG1B_DICDI1.597e-2432.80Putative phagocytic receptor 1b OS=Dictyostelium d... [more]
TM9S3_MOUSE3.557e-2432.45Transmembrane 9 superfamily member 3 OS=Mus muscul... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YB14FM1 TF Citrus clementina cDNA clone KN0AAP11YB14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925271 ID=FC925271; Name=FC925271; organism=Citrus clementina; type=EST; length=583bp
TGAGACCCAGGACGTAGCTCAAGAAGAGACAGGGTGGAAACTTGTTCATG
GTGATGTTTTCAGGCCCCCCACTAATTCGGATCTACTCTGTGTCTATGTC
GGAACTGGTGTCCAGTTTTTTGGAATGATGCTTGTTACTATGATCTTTGC
CCTTCTTGGTTTCCTCTCCCCTTCAAACTGAGGTGGGCTTATGACGGCTA
TGCTCCTTCTCTGGGTCTTCATGGGTCTTTTTGCTGGTTATGCCTCTGCT
CGCTTGTACAAGTTGTTTAAAGGAACTGAGTGGAAGAGAATTGCCTTCAG
AACTGCAATCACTTTCCCAGGAATTGTCTCAGCCATTTTCTTTGTCTTGA
ATGCTCTTATTTGGGGACAGAAATCGTCCGGGGCTGTGCCATTTGGGACC
ATGTTTGCTCTCATCGTCTTGTGGTTTGGAATCTCAGTACCACTAGTATA
TGTTGGCAGTTTTGTTGGGTTCAAGAAGCCAGCAATTGAGGATCCGGTGA
AGACAAACAAAATCCCAAGGCAAATCCCTGAGCAGGCTTGGTATATGAAC
CCCATCTTCTCAATTCCCATTGGAGGGATACTT
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