FC925294

Overview
NameFC925294
Unique NameFC925294
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFG1_DESPS (Elongation factor G 1 OS=Desulfotalea psychrophila GN=fusA1 PE=3 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 3.635e-64
Identity = 121/148 (81.76%), Postives = 133/148 (89.86%), Query Frame = 2
Query:  191 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVFG 634
            + + ++RNIGISAHIDSGKTTLTERILFYT RIH IHEVRG+DGVGAKMDSM+LE+E+GITIQSAAT C WK   INIIDTPGHVDFTVEVERALRVLDGA+LVLCSVGGVQSQSITV+RQM RY VPR+AFINK DR GA+P KV G
Sbjct:    3 KDLSKVRNIGISAHIDSGKTTLTERILFYTDRIHAIHEVRGKDGVGAKMDSMELEKERGITIQSAATFCNWKGTDINIIDTPGHVDFTVEVERALRVLDGAVLVLCSVGGVQSQSITVNRQMTRYNVPRIAFINKCDRTGANPAKVTG 150          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFG2_BDEBA (Elongation factor G 2 OS=Bdellovibrio bacteriovorus GN=fusA2 PE=3 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 4.748e-64
Identity = 119/147 (80.95%), Postives = 133/147 (90.48%), Query Frame = 2
Query:  188 KESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKV 628
            K +++ +RNIGISAHIDSGKTT +ERILFY GRIH IHEVRG+DGVGA MDSMDLEREKGITIQSAAT   WKDY IN+IDTPGHVDFTVEVER+LRVLDGAIL+LC V GVQSQSITVDRQM+RY VPRLAF+NKLDR GA+P++V
Sbjct:    4 KWNIDMVRNIGISAHIDSGKTTTSERILFYGGRIHAIHEVRGKDGVGATMDSMDLEREKGITIQSAATQVQWKDYTINLIDTPGHVDFTVEVERSLRVLDGAILLLCGVAGVQSQSITVDRQMKRYNVPRLAFVNKLDRQGANPYRV 150          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_DROYA (Elongation factor G, mitochondrial OS=Drosophila yakuba GN=GE18370 PE=3 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.058e-63
Identity = 125/177 (70.62%), Postives = 146/177 (82.49%), Query Frame = 2
Query:   98 LLQGNFHLQSRQFSAGGNLARAKDDKEPWWKESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKV 628
            LL GN  L+ R   + G    +   K    K  +ER+RNIGISAHIDSGKTTLTERILFYTGRI E+HEVRG+D VGA MDSM+LER++GITIQSAAT   WKD  INIIDTPGHVDFTVEVERALRVLDGA+LVLC+VGGVQSQ++TV+RQM+RY VP LAFINKLDR+G++P++V
Sbjct:    7 LLTGNITLRRRAMESLGKAGYSSHAKFSEHKP-IERIRNIGISAHIDSGKTTLTERILFYTGRIAEMHEVRGKDNVGATMDSMELERQRGITIQSAATYTLWKDTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCAVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRLGSNPYRV 182          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_ANOGA (Elongation factor G, mitochondrial OS=Anopheles gambiae GN=AGAP009737 PE=3 SV=4)

HSP 1 Score: 242.662 bits (618), Expect = 1.381e-63
Identity = 117/148 (79.05%), Postives = 136/148 (91.89%), Query Frame = 2
Query:  191 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVFG 634
            + +E++RNIGISAHIDSGKTTLTERILFYTGRI E+HEV+G+D VGA MDSM+LER++GITIQSAAT   WKD+ INIIDTPGHVDFTVEVERALRVLDGA+LVLCSVGGVQSQ++TV+RQM+RY VP LAFINKLDR GA+P++V G
Sbjct:   36 KQLEKIRNIGISAHIDSGKTTLTERILFYTGRIKEMHEVKGKDNVGATMDSMELERQRGITIQSAATYTIWKDHNINIIDTPGHVDFTVEVERALRVLDGAVLVLCSVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRSGANPYRVLG 183          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_AEDAE (Elongation factor G, mitochondrial OS=Aedes aegypti GN=AAEL010742 PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.381e-63
Identity = 118/146 (80.82%), Postives = 135/146 (92.47%), Query Frame = 2
Query:  197 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVFG 634
            +ER+RNIGISAHIDSGKTTLTERILFYTGRI ++HEV+G+D VGA MDSM+LER++GITIQSAAT   WKD+ INIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQ++TV+RQM+RY VP LAFINKLDR GA+P++V G
Sbjct:   39 LERIRNIGISAHIDSGKTTLTERILFYTGRIKQMHEVKGKDNVGATMDSMELERQRGITIQSAATYTMWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRTGANPYRVLG 184          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_SCHPO (Elongation factor G, mitochondrial OS=Schizosaccharomyces pombe GN=mef1 PE=2 SV=2)

HSP 1 Score: 241.891 bits (616), Expect = 2.356e-63
Identity = 117/165 (70.91%), Postives = 136/165 (82.42%), Query Frame = 2
Query:  188 KESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW------------------KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKV 628
            K+ ++++RNIGISAHIDSGKTT TER+L+YTGRI +IHEVRG+D VGAKMD M+LEREKGITIQSAAT C W                  K Y INIIDTPGH+DFT+EVERALRVLDGA+LVLC+V GVQSQ+ITVDRQMRRY VPR++F+NK+DRMGADPWKV
Sbjct:   53 KKRLKQIRNIGISAHIDSGKTTFTERVLYYTGRIKDIHEVRGKDNVGAKMDFMELEREKGITIQSAATHCTWERTVDQIEANEKQKTDFEKSYNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRYNVPRISFVNKMDRMGADPWKV 217          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_PYRTR (Elongation factor G, mitochondrial OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP) GN=mef1 PE=3 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.077e-63
Identity = 121/186 (65.05%), Postives = 145/186 (77.96%), Query Frame = 2
Query:  131 QFSAGGNLARAKDDK------------EPWWKESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW---------KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWK 625
            Q +A   L +AKDD             +P   E + R+RNIGI+AHIDSGKTT TER+LFYTGRI+ IHEVRG+D VGAKMDSMDLEREKGITIQSAAT C W         + Y IN+IDTPGH+DFT+EVERALRVLDGA+++LC+V GVQSQ+ITVDRQMRRY +PR++F+NK+DRMGA+PWK
Sbjct:   65 QTTAAKVLEQAKDDPSTLTQEKIVENLDPVEWERLSRVRNIGIAAHIDSGKTTATERVLFYTGRINAIHEVRGKDAVGAKMDSMDLEREKGITIQSAATFCDWVKKNDEGKEEKYHINLIDTPGHIDFTIEVERALRVLDGAVMILCAVSGVQSQTITVDRQMRRYNIPRISFVNKMDRMGANPWK 250          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_DROSI (Elongation factor G, mitochondrial OS=Drosophila simulans GN=GD22506 PE=3 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.077e-63
Identity = 125/177 (70.62%), Postives = 146/177 (82.49%), Query Frame = 2
Query:   98 LLQGNFHLQSRQFSAGGNLARAKDDKEPWWKESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKV 628
            LL GN  L+ R   + G    +   K    K  +ER+RNIGISAHIDSGKTTLTERILFYTGRI E+HEVRG+D VGA MDSM+LER++GITIQSAAT   WKD  INIIDTPGHVDFTVEVERALRVLDGA+LVLC+VGGVQSQ++TV+RQM+RY VP LAFINKLDR+G++P++V
Sbjct:    7 LLTGNNTLRLRALESLGKAGYSSHAKFSEHKP-IERIRNIGISAHIDSGKTTLTERILFYTGRIAEMHEVRGKDNVGATMDSMELERQRGITIQSAATYTLWKDTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCAVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRLGSNPYRV 182          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_DROSE (Elongation factor G, mitochondrial OS=Drosophila sechellia GN=GM13604 PE=3 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.077e-63
Identity = 125/177 (70.62%), Postives = 146/177 (82.49%), Query Frame = 2
Query:   98 LLQGNFHLQSRQFSAGGNLARAKDDKEPWWKESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKV 628
            LL GN  L+ R   + G    +   K    K  +ER+RNIGISAHIDSGKTTLTERILFYTGRI E+HEVRG+D VGA MDSM+LER++GITIQSAAT   WKD  INIIDTPGHVDFTVEVERALRVLDGA+LVLC+VGGVQSQ++TV+RQM+RY VP LAFINKLDR+G++P++V
Sbjct:    7 LLTGNNTLRLRALESLGKAGYSSHAKFSEHKP-IERIRNIGISAHIDSGKTTLTERILFYTGRIAEMHEVRGKDNVGATMDSMELERQRGITIQSAATYTLWKDTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCAVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRLGSNPYRV 182          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_DROME (Elongation factor G, mitochondrial OS=Drosophila melanogaster GN=CG4567 PE=2 SV=2)

HSP 1 Score: 241.506 bits (615), Expect = 3.077e-63
Identity = 125/177 (70.62%), Postives = 146/177 (82.49%), Query Frame = 2
Query:   98 LLQGNFHLQSRQFSAGGNLARAKDDKEPWWKESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKV 628
            LL GN  L+ R   + G    +   K    K  +ER+RNIGISAHIDSGKTTLTERILFYTGRI E+HEVRG+D VGA MDSM+LER++GITIQSAAT   WKD  INIIDTPGHVDFTVEVERALRVLDGA+LVLC+VGGVQSQ++TV+RQM+RY VP LAFINKLDR+G++P++V
Sbjct:    7 LLTGNNTLRLRALKSLGKAGYSSHAKFSEHKP-IERIRNIGISAHIDSGKTTLTERILFYTGRIAEMHEVRGKDNVGATMDSMELERQRGITIQSAATYTLWKDTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCAVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRLGSNPYRV 182          
The following BLAST results are available for this feature:
BLAST of FC925294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFG1_DESPS3.635e-6481.76Elongation factor G 1 OS=Desulfotalea psychrophila... [more]
EFG2_BDEBA4.748e-6480.95Elongation factor G 2 OS=Bdellovibrio bacteriovoru... [more]
EFGM_DROYA1.058e-6370.62Elongation factor G, mitochondrial OS=Drosophila y... [more]
EFGM_ANOGA1.381e-6379.05Elongation factor G, mitochondrial OS=Anopheles ga... [more]
EFGM_AEDAE1.381e-6380.82Elongation factor G, mitochondrial OS=Aedes aegypt... [more]
EFGM_SCHPO2.356e-6370.91Elongation factor G, mitochondrial OS=Schizosaccha... [more]
EFGM_PYRTR3.077e-6365.05Elongation factor G, mitochondrial OS=Pyrenophora ... [more]
EFGM_DROSI3.077e-6370.62Elongation factor G, mitochondrial OS=Drosophila s... [more]
EFGM_DROSE3.077e-6370.62Elongation factor G, mitochondrial OS=Drosophila s... [more]
EFGM_DROME3.077e-6370.62Elongation factor G, mitochondrial OS=Drosophila m... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YF17FM1 TF Citrus clementina cDNA clone KN0AAP3YF17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925294 ID=FC925294; Name=FC925294; organism=Citrus clementina; type=EST; length=679bp
ATTCCCACGATCTCCAGCACCACGTCTCCTCTACACTCTCTTCTCCTCTT
CGAGAACGACACCGACCAAATCCTCACCCCAATCTCCGTCTGCAGCCCTC
CTCCAAGGAAACTTCCACCTCCAATCGCGGCAGTTCTCGGCGGGAGGAAA
CCTCGCACGTGCGAAGGATGATAAGGAGCCATGGTGGAAGGAATCAATGG
AGCGGCTCCGAAATATCGGAATCTCGGCACATATCGATTCCGGAAAAACT
ACACTAACCGAGCGAATTCTGTTTTACACTGGACGGATTCACGAGATTCA
CGAGGTTCGAGGGCGAGACGGCGTCGGCGCCAAAATGGATTCTATGGATT
TGGAGCGTGAGAAAGGTATCACAATTCAGTCAGCCGCCACTAGCTGTGCT
TGGAAGGATTACCAGATTAATATAATTGACACTCCTGGACACGTAGACTT
CACAGTTGAAGTAGAAAGGGCTTTGCGAGTTCTTGATGGCGCAATTCTTG
TGCTTTGTAGTGTTGGTGGCGTGCAAAGTCAATCAATTACCGTTGACCGG
CAAATGAGGAGATACGAGGTGCCAAGACTGGCTTTCATTAACAAACTTGA
TAGAATGGGAGCTGATCCATGGAAAGTTTTTGGATCAGGCAAGGGCTAAG
CTGGCGCACCACCTGTGCTGCTGTGCAAG
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