FC925294

Overview
NameFC925294
Unique NameFC925294
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_DROMO (Elongation factor G, mitochondrial OS=Drosophila mojavensis GN=GI17797 PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.019e-63
Identity = 123/178 (69.10%), Postives = 144/178 (80.90%), Query Frame = 2
Query:   98 LLQGNFHLQSRQFSAGGNLARAKDDKEPWWKES-MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKV 628
            +L GN  L+     A   L         + +   +ER+RNIGISAHIDSGKTTLTERILFYTGRI E+HEVRG+D VGA MDSM+LER++GITIQSAAT   WKD  INIIDTPGHVDFTVEVERALRVLDGA+LVLC+VGGVQSQ++TV+RQM+RY VP LAFINKLDRMG++P++V
Sbjct:    7 VLNGNLPLRLSTLKAARQLQCGYSSHAKYAEHKPIERIRNIGISAHIDSGKTTLTERILFYTGRIAEMHEVRGKDNVGATMDSMELERQRGITIQSAATYTVWKDVNINIIDTPGHVDFTVEVERALRVLDGAVLVLCAVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRMGSNPYRV 184          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFG1_MYXXD (Elongation factor G 1 OS=Myxococcus xanthus (strain DK 1622) GN=fusA1 PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.019e-63
Identity = 116/140 (82.86%), Postives = 131/140 (93.57%), Query Frame = 2
Query:  197 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGAD 616
            +E++RNIGISAHIDSGKTTL+ERILFYTGRIHEIHEVRG+DGVGA MD+MDLEREKGITIQSAAT   W +Y IN+IDTPGHVDFT+EVER+LRVLDGAILVLCSV GVQSQSITVDRQM+RY VPR+AF+NK+DR GA+
Sbjct:    7 IEKIRNIGISAHIDSGKTTLSERILFYTGRIHEIHEVRGKDGVGAIMDNMDLEREKGITIQSAATFAMWGEYNINLIDTPGHVDFTIEVERSLRVLDGAILVLCSVAGVQSQSITVDRQMKRYRVPRIAFVNKMDRSGAN 146          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_YARLI (Elongation factor G, mitochondrial OS=Yarrowia lipolytica GN=MEF1 PE=3 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 6.856e-63
Identity = 115/147 (78.23%), Postives = 130/147 (88.44%), Query Frame = 2
Query:  197 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW----KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWK 625
            + R+RNIGISAHIDSGKTT +ERILFYTGR  EIHEVRG+DGVGAKMD MDLEREKGITIQSAAT   W    +DY  N+IDTPGH+DFT+EVERALRVLDGA+LV+C+V GVQSQ++TVDRQMRRY VPR+ FINK+DRMGADPWK
Sbjct:   55 LARMRNIGISAHIDSGKTTFSERILFYTGRTKEIHEVRGKDGVGAKMDHMDLEREKGITIQSAATYATWIKENQDYHFNVIDTPGHIDFTIEVERALRVLDGAVLVVCAVSGVQSQTMTVDRQMRRYNVPRVTFINKMDRMGADPWK 201          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_CANDC (Elongation factor G, mitochondrial OS=Candida dubliniensis (strain CD36 / CBS 7987 / NCPF 3949 / NRRL Y-17841) GN=MEF1 PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 8.954e-63
Identity = 114/149 (76.51%), Postives = 131/149 (87.92%), Query Frame = 2
Query:  191 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW----KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWK 625
            ++  RLRNIGISAHIDSGKTT TER+LFYTGRI  IHEVRG+D VGAKMD MDLEREKGITIQSAAT C+W    K Y  N+IDTPGH+DFT+EVERALRVLDGA+LV+C+V GVQSQ++TVDRQMRRY VPR+ FINK+DRMGA+PW+
Sbjct:   63 QASTRLRNIGISAHIDSGKTTFTERVLFYTGRIKAIHEVRGKDSVGAKMDHMDLEREKGITIQSAATYCSWDKDDKSYHFNLIDTPGHIDFTIEVERALRVLDGAVLVVCAVAGVQSQTVTVDRQMRRYNVPRVTFINKMDRMGANPWR 211          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_CANAL (Elongation factor G, mitochondrial OS=Candida albicans GN=MEF1 PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 8.954e-63
Identity = 114/149 (76.51%), Postives = 131/149 (87.92%), Query Frame = 2
Query:  191 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW----KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWK 625
            ++  RLRNIGISAHIDSGKTT TER+LFYTGRI  IHEVRG+D VGAKMD MDLEREKGITIQSAAT C+W    K Y  N+IDTPGH+DFT+EVERALRVLDGA+LV+C+V GVQSQ++TVDRQMRRY VPR+ FINK+DRMGA+PW+
Sbjct:   63 QASTRLRNIGISAHIDSGKTTFTERVLFYTGRIKAIHEVRGKDSVGAKMDHMDLEREKGITIQSAATYCSWDKDDKSYHFNLIDTPGHIDFTIEVERALRVLDGAVLVVCAVAGVQSQTVTVDRQMRRYNVPRVTFINKMDRMGANPWR 211          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_VANPO (Elongation factor G, mitochondrial OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=MEF1 PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.169e-62
Identity = 113/149 (75.84%), Postives = 133/149 (89.26%), Query Frame = 2
Query:  191 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW----KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWK 625
            ++  +LRNIGISAHIDSGKTT TER+L+YTGRI  IHEVRGRD VGAKMDSMDLEREKGITIQSAAT C+W    KDY  N+IDTPGH+DFT+EVERALRVLDGA+L++C+V GVQSQ++TVDRQMRRY VPR+ FINK+DRMG++P+K
Sbjct:   81 QAASKLRNIGISAHIDSGKTTFTERVLYYTGRIKAIHEVRGRDNVGAKMDSMDLEREKGITIQSAATYCSWNKDQKDYHFNLIDTPGHIDFTIEVERALRVLDGAVLIVCAVSGVQSQTVTVDRQMRRYNVPRITFINKMDRMGSNPFK 229          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_DROVI (Elongation factor G, mitochondrial OS=Drosophila virilis GN=GJ17621 PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 1.995e-62
Identity = 116/144 (80.56%), Postives = 134/144 (93.06%), Query Frame = 2
Query:  197 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKV 628
            +ER+RNIGISAHIDSGKTTLTERILFYTGRI E+HEVRG+D VGA MDSM+LER++GITIQSAAT   WKD  INIIDTPGHVDFTVEVERALRVLDGA+LVLC+VGGVQSQ++TV+RQM+RY VP LAFINKLDR+G++P++V
Sbjct:   41 IERIRNIGISAHIDSGKTTLTERILFYTGRIAEMHEVRGKDNVGATMDSMELERQRGITIQSAATYTLWKDTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCAVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRLGSNPYRV 184          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_DROGR (Elongation factor G, mitochondrial OS=Drosophila grimshawi GN=GH13155 PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.605e-62
Identity = 117/146 (80.14%), Postives = 135/146 (92.47%), Query Frame = 2
Query:  191 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKV 628
            +S+ER+RNIGISAHIDSGKTTLTERILFYTGRI E+HEVRG+D VGA MDSM+LER++GITIQSAAT   WKD  INIIDTPGHVDFTVEVERALRVLDGA+LVLC+VGGVQSQ++TV+RQM+RY VP LAFINKLDR+G++P +V
Sbjct:   39 KSIERIRNIGISAHIDSGKTTLTERILFYTGRIAEMHEVRGKDNVGATMDSMELERQRGITIQSAATYTMWKDTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCAVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRLGSNPNRV 184          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_ASPCL (Elongation factor G, mitochondrial OS=Aspergillus clavatus GN=mef1 PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.605e-62
Identity = 117/162 (72.22%), Postives = 136/162 (83.95%), Query Frame = 2
Query:  167 DDKEPWWKESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW---------KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWK 625
            D+ +P     + R+RNIGI+AHIDSGKTT TERILFYTGRI  IHEVRGRD VGAKMDSMDLEREKGITIQSAAT C W         + Y IN+IDTPGH+DFT+EVERALRVLDGA+++LC+V GVQSQ+ITVDRQMRRY VPR++FINK+DRMGA+P+K
Sbjct:   88 DNLDPVEATRLSRIRNIGIAAHIDSGKTTCTERILFYTGRIKAIHEVRGRDNVGAKMDSMDLEREKGITIQSAATFCDWVKKEDDGREEKYHINLIDTPGHIDFTIEVERALRVLDGAVMILCAVSGVQSQTITVDRQMRRYNVPRISFINKMDRMGANPFK 249          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_USTMA (Elongation factor G, mitochondrial OS=Ustilago maydis GN=MEF1 PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 4.444e-62
Identity = 119/171 (69.59%), Postives = 134/171 (78.36%), Query Frame = 2
Query:  203 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK---------------------------DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVFG 634
            R RN+GISAHIDSGKTTLTER+LFYTGRI +IHEVRGRD VGAKMD M+LEREKGITIQSAAT C+WK                           D+ INIIDTPGHVDFT+EVERALRVLDGA+LVLC+V GVQSQ+ITVDRQMRRY VPR++FINK+DR GA+PW+V G
Sbjct:   94 RQRNVGISAHIDSGKTTLTERVLFYTGRIKDIHEVRGRDAVGAKMDHMELEREKGITIQSAATYCSWKATPPTEKASVSGDAANVESKELMEKKQDFHINIIDTPGHVDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRYSVPRISFINKMDRAGANPWRVIG 264          
The following BLAST results are available for this feature:
BLAST of FC925294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFGM_DROMO4.019e-6369.10Elongation factor G, mitochondrial OS=Drosophila m... [more]
EFG1_MYXXD4.019e-6382.86Elongation factor G 1 OS=Myxococcus xanthus (strai... [more]
EFGM_YARLI6.856e-6378.23Elongation factor G, mitochondrial OS=Yarrowia lip... [more]
EFGM_CANDC8.954e-6376.51Elongation factor G, mitochondrial OS=Candida dubl... [more]
EFGM_CANAL8.954e-6376.51Elongation factor G, mitochondrial OS=Candida albi... [more]
EFGM_VANPO1.169e-6275.84Elongation factor G, mitochondrial OS=Vanderwaltoz... [more]
EFGM_DROVI1.995e-6280.56Elongation factor G, mitochondrial OS=Drosophila v... [more]
EFGM_DROGR2.605e-6280.14Elongation factor G, mitochondrial OS=Drosophila g... [more]
EFGM_ASPCL2.605e-6272.22Elongation factor G, mitochondrial OS=Aspergillus ... [more]
EFGM_USTMA4.444e-6269.59Elongation factor G, mitochondrial OS=Ustilago may... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YF17FM1 TF Citrus clementina cDNA clone KN0AAP3YF17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925294 ID=FC925294; Name=FC925294; organism=Citrus clementina; type=EST; length=679bp
ATTCCCACGATCTCCAGCACCACGTCTCCTCTACACTCTCTTCTCCTCTT
CGAGAACGACACCGACCAAATCCTCACCCCAATCTCCGTCTGCAGCCCTC
CTCCAAGGAAACTTCCACCTCCAATCGCGGCAGTTCTCGGCGGGAGGAAA
CCTCGCACGTGCGAAGGATGATAAGGAGCCATGGTGGAAGGAATCAATGG
AGCGGCTCCGAAATATCGGAATCTCGGCACATATCGATTCCGGAAAAACT
ACACTAACCGAGCGAATTCTGTTTTACACTGGACGGATTCACGAGATTCA
CGAGGTTCGAGGGCGAGACGGCGTCGGCGCCAAAATGGATTCTATGGATT
TGGAGCGTGAGAAAGGTATCACAATTCAGTCAGCCGCCACTAGCTGTGCT
TGGAAGGATTACCAGATTAATATAATTGACACTCCTGGACACGTAGACTT
CACAGTTGAAGTAGAAAGGGCTTTGCGAGTTCTTGATGGCGCAATTCTTG
TGCTTTGTAGTGTTGGTGGCGTGCAAAGTCAATCAATTACCGTTGACCGG
CAAATGAGGAGATACGAGGTGCCAAGACTGGCTTTCATTAACAAACTTGA
TAGAATGGGAGCTGATCCATGGAAAGTTTTTGGATCAGGCAAGGGCTAAG
CTGGCGCACCACCTGTGCTGCTGTGCAAG
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