FC925318
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC925318 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 1.326e-26 Identity = 60/88 (68.18%), Postives = 67/88 (76.14%), Query Frame = 2 Query: 257 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAICHWEG 520 +L+HAQSILAIWACQVVLMG VEGYRI +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAI +G Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
BLAST of FC925318 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 1.326e-26 Identity = 60/88 (68.18%), Postives = 67/88 (76.14%), Query Frame = 2 Query: 257 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAICHWEG 520 +L+HAQSILAIWACQVVLMG VEGYRI +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAI +G Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
BLAST of FC925318 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 1.326e-26 Identity = 60/88 (68.18%), Postives = 67/88 (76.14%), Query Frame = 2 Query: 257 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAICHWEG 520 +L+HAQSILAIWACQVVLMG VEGYRI +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAI +G Sbjct: 1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 88
BLAST of FC925318 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 1.326e-26 Identity = 60/88 (68.18%), Postives = 67/88 (76.14%), Query Frame = 2 Query: 257 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAICHWEG 520 +L+HAQSILAIWACQVVLMG VEGYRI +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAI +G Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
BLAST of FC925318 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 1.326e-26 Identity = 60/88 (68.18%), Postives = 67/88 (76.14%), Query Frame = 2 Query: 257 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAICHWEG 520 +L+HAQSILAIWACQVVLMG VEGYRI +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAI +G Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
BLAST of FC925318 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 3.859e-26 Identity = 61/96 (63.54%), Postives = 69/96 (71.88%), Query Frame = 2 Query: 236 LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXX-AFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAICHWEG 520 LDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+ +FDPL DP+ FAELKVKE+KNGRLAMFSMFGFFVQAI +G Sbjct: 1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 96
BLAST of FC925318 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.162e-22 Identity = 67/166 (40.36%), Postives = 86/166 (51.81%), Query Frame = 2 Query: 5 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQ 499 PSYL G PGD+G+D+ GL P + +E E+IH RWAML G + PE L G W KA GG YLG P + ++ I A + + + FVE R AFDPLG + DP +F ELKVKE+KNGRLA+ ++ GF VQ Sbjct: 56 PSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQ 209
BLAST of FC925318 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 3.381e-22 Identity = 65/166 (39.16%), Postives = 86/166 (51.81%), Query Frame = 2 Query: 5 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQ 499 P++L G PGD+G+D GL+ PE F + +E E+ H RWAML G + PE L G W KA +G YLGNP + ++ I A + + + F E R AFDPLG + DP +F ELK+KE+KNGRLAM + GF VQ Sbjct: 55 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQR---TMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQ 208
BLAST of FC925318 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 7.050e-20 Identity = 62/174 (35.63%), Postives = 84/174 (48.28%), Query Frame = 2 Query: 5 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSMFGFFVQAI 505 P +L G PGD+G+D GL +DPE+ N + E++HSRWAMLGA G PE L+K GV W+ AG Q + + L + +L WA ++ G V I FDPLG P + EL+ KE+KNGRLAM ++ G + Q I Sbjct: 75 PEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHI 241
BLAST of FC925318 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 9.207e-20 Identity = 60/174 (34.48%), Postives = 86/174 (49.43%), Query Frame = 2 Query: 5 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSMFGFFVQAI 505 P +L G PGD+G+D GL++DPE+ N++ E++H RWAMLGA G PE+L+K G+ W+ AG Q + + L + +L WA ++ G V I FDPLG P + EL+ KE+KNGRLAM ++ G + Q I Sbjct: 75 PPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHI 241 The following BLAST results are available for this feature:
BLAST of FC925318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 81
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Sequences
The
following sequences are available for this feature:
EST sequence >FC925318 ID=FC925318; Name=FC925318; organism=Citrus clementina; type=EST; length=521bpback to top |