FC925354

Overview
NameFC925354
Unique NameFC925354
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length308
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: THIO_STAAB (Thioredoxin OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=trxA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.607e-13
Identity = 41/83 (49.40%), Postives = 54/83 (65.06%), Query Frame = 2
Query:   17 VDFTASWCGPCRFIAPFLAELA-NILPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 259
            VDF A+WCGPC+ IAP L ELA +       LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   22 VDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: THIO_STAA8 (Thioredoxin OS=Staphylococcus aureus (strain NCTC 8325) GN=trxA PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.607e-13
Identity = 41/83 (49.40%), Postives = 54/83 (65.06%), Query Frame = 2
Query:   17 VDFTASWCGPCRFIAPFLAELA-NILPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 259
            VDF A+WCGPC+ IAP L ELA +       LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   22 VDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: THIO_STAA3 (Thioredoxin OS=Staphylococcus aureus (strain USA300) GN=trxA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.607e-13
Identity = 41/83 (49.40%), Postives = 54/83 (65.06%), Query Frame = 2
Query:   17 VDFTASWCGPCRFIAPFLAELA-NILPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 259
            VDF A+WCGPC+ IAP L ELA +       LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   22 VDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEEL (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis elegans GN=F56G4.5 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.607e-13
Identity = 34/90 (37.78%), Postives = 53/90 (58.89%), Query Frame = 2
Query:    5 QLPFVDFTASWCGPCRFIAPFLAELANILPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 274
            +L  +DF A+WCGPCR I+P   + +    N  FLKV+ D  + +   + + AMPTF+FLK  + VD V GA ++ + + I +H +   A
Sbjct:   23 RLIIIDFFANWCGPCRMISPIFEQFSAEYGNATFLKVNCDVARDIVQRYNISAMPTFIFLKNRQQVDMVRGANQQAIAEKIRQHYSPTPA 112          
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: THIO_CHLMU (Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.741e-13
Identity = 37/84 (44.05%), Postives = 51/84 (60.71%), Query Frame = 2
Query:    8 LPFVDFTASWCGPCRFIAPFLAELANILPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKH 256
            L  VDF A WCGPC+ + P L  LA  LP V  LK+D+D     A  + V ++PT +  K+GK V++ VG K K+ L + I+KH
Sbjct:   18 LVLVDFFAEWCGPCKMLTPVLEALAAELPYVTILKLDIDASPRPAEQFGVSSIPTLILFKDGKEVERSVGLKDKDSLVKLISKH 101          
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: THIO1_SYNE7 (Thioredoxin-1 OS=Synechococcus elongatus (strain PCC 7942) GN=trxA PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.741e-13
Identity = 39/83 (46.99%), Postives = 53/83 (63.86%), Query Frame = 2
Query:   17 VDFTASWCGPCRFIAPFLAELANILPN-VLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 259
            VDF A WCGPCR +AP + E+A    + V  +KV+ DE  SVA+ + + ++PT M  K+G+ VD VVGA  K  L  T+ KHL
Sbjct:   25 VDFWAPWCGPCRMVAPVVDEIAQQYSDQVKVVKVNTDENPSVASQYGIRSIPTLMIFKDGQRVDTVVGAVPKTTLANTLDKHL 107          
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: THIO_PENCH (Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.580e-13
Identity = 37/74 (50.00%), Postives = 46/74 (62.16%), Query Frame = 2
Query:   17 VDFTASWCGPCRFIAPFLAELANILPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQ 238
            VDF A+WCGPC+ IAP L +L+     + F KVDVDEL  VA    V AMPTF F K G+  ++V GA    +Q
Sbjct:   25 VDFHATWCGPCKAIAPALEKLSETHTGIQFYKVDVDELSEVAASNGVSAMPTFHFYKGGERNEEVKGANPAAIQ 98          
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: THIO_EMENI (Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.580e-13
Identity = 36/82 (43.90%), Postives = 49/82 (59.76%), Query Frame = 2
Query:   17 VDFTASWCGPCRFIAPFLAELANILPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLA 262
            VD  A+WCGPC+ IAP + + A    +  F ++DVDEL  VA +  + AMPTF+  K+G+ V  VVGA    L+  I   LA
Sbjct:   29 VDCFATWCGPCKAIAPTVEKFAQTYTDASFYQIDVDELSEVAAELGIRAMPTFLLFKDGQKVSDVVGANPGALEAGIKALLA 110          
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: THIO_CYACA (Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.580e-13
Identity = 36/88 (40.91%), Postives = 55/88 (62.50%), Query Frame = 2
Query:    2 KQLPFVDFTASWCGPCRFIAPFLAELAN-ILPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 259
            ++L  VDF A WCGPCR I+P + ELA   +  V  +K++ DE  S++ ++ + ++PT M  K+GK VD V+GA  K  L   + K+L
Sbjct:   20 EKLVLVDFWAPWCGPCRMISPVIDELAQEYVEQVKIVKINTDENPSISAEYGIRSIPTLMLFKDGKRVDTVIGAVPKSTLTNALKKYL 107          
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: THIO_BACSU (Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 3.580e-13
Identity = 38/82 (46.34%), Postives = 54/82 (65.85%), Query Frame = 2
Query:   20 DFTASWCGPCRFIAPFLAELANILPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 259
            DF A WCGPC+ IAP L EL   + + L  +K+DVDE +  A  + V ++PT + LK+G++V+  VG K KE LQ+ + KHL
Sbjct:   23 DFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNKHL 104          
The following BLAST results are available for this feature:
BLAST of FC925354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
THIO_STAAB1.607e-1349.40Thioredoxin OS=Staphylococcus aureus (strain bovin... [more]
THIO_STAA81.607e-1349.40Thioredoxin OS=Staphylococcus aureus (strain NCTC ... [more]
THIO_STAA31.607e-1349.40Thioredoxin OS=Staphylococcus aureus (strain USA30... [more]
NGLY1_CAEEL1.607e-1337.78Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
THIO_CHLMU2.741e-1344.05Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV... [more]
THIO1_SYNE72.741e-1346.99Thioredoxin-1 OS=Synechococcus elongatus (strain P... [more]
THIO_PENCH3.580e-1350.00Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=... [more]
THIO_EMENI3.580e-1343.90Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV... [more]
THIO_CYACA3.580e-1340.91Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV... [more]
THIO_BACSU3.580e-1346.34Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YG22FM1 TF Citrus clementina cDNA clone KN0AAP3YG22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925354 ID=FC925354; Name=FC925354; organism=Citrus clementina; type=EST; length=308bp
CAAACAGCTGCCTTTTGTTGATTTCACTGCTTCATGGTGCGGACCATGCC
GTTTCATTGCTCCTTTCTTGGCAGAGCTGGCCAATATACTGCCTAATGTC
CTGTTTCTGAAGGTTGATGTGGATGAACTGAAGAGTGTTGCCACTGACTG
GGCAGTGGAGGCCATGCCAACTTTCATGTTCCTGAAAGAGGGGAAGATTG
TGGACAAGGTGGTTGGAGCAAAGAAAGAGGAACTGCAGCAGACTATTGCC
AAGCATCTGGCAACTGCTTCTGCCTAATAAGTTATAACTATCCTCCTGCC
TTTTGGCT
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