FC925362
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_FRAT1 (Lipid A export ATP-binding/permease protein msbA OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=msbA PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.189e-12 Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQ 199 E +V A++SL K T +VIAHRLSTV++AD + V+ G +VESG H+ELL +GG+YT L + LQ Sbjct: 544 ERVVQQALESLTKSCTTIVIAHRLSTVENADKIVVMDGGRVVESGKHQELLEQGGLYTRLYQSGLQ 609
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_CHRVO (Lipid A export ATP-binding/permease protein msbA OS=Chromobacterium violaceum GN=msbA PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.189e-12 Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQEPKTE 214 E LV A+++LMK RT +VIAHRLST+++AD + V+ G + E G H+ LL +GG+Y L Q EP+ + Sbjct: 514 ERLVQAALENLMKNRTTIVIAHRLSTIENADRIVVMHQGRLAEQGRHQALLEQGGLYARLHSLQFSEPQAD 584
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_CHRSD (Lipid A export ATP-binding/permease protein msbA OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=msbA PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.189e-12 Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 202 E + A++ + +GRT VIAHRLST++ AD + V+ GEI+ESGTH ELL++ G Y AL + Q QE Sbjct: 511 ERYIQQALERVCRGRTTFVIAHRLSTIERADRILVMEQGEIIESGTHGELLAQDGAYAALHQLQFQE 577
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_PSESM (Lipid A export ATP-binding/permease protein msbA OS=Pseudomonas syringae pv. tomato GN=msbA PE=3 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 4.166e-12 Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 2 Query: 20 AMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQEP 205 A+D +MKGRT LVIAHRLST++ AD + V+ G+IVE GTH ELL++ G Y L L EP Sbjct: 533 ALDHVMKGRTTLVIAHRLSTIEKADMILVMDAGKIVERGTHTELLAQNGYYARLHAMGLDEP 594
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_PSEPF (Lipid A export ATP-binding/permease protein msbA OS=Pseudomonas fluorescens (strain Pf0-1) GN=msbA PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.166e-12 Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = 2 Query: 20 AMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQEPKTEI 217 A+D +MKGRT LVIAHRLST++ AD + V+ G IVE GTH++LL++ G Y L L P +I Sbjct: 534 ALDQVMKGRTTLVIAHRLSTIEKADLILVMDQGRIVERGTHDDLLAQNGYYARLNAMGLDAPAEDI 599
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_BURXL (Lipid A export ATP-binding/permease protein msbA OS=Burkholderia xenovorans (strain LB400) GN=msbA PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.166e-12 Identity = 34/61 (55.74%), Postives = 47/61 (77.05%), Query Frame = 2 Query: 20 AMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 202 A+++LMKGRT LVIAHRLST++ AD + V+ G IVESG+H ELL++ G+Y L + Q Q+ Sbjct: 534 ALETLMKGRTTLVIAHRLSTIERADRILVMEAGRIVESGSHRELLAQDGLYAHLHRIQFQQ 594
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: AB3B_ARATH (ABC transporter B family member 3 OS=Arabidopsis thaliana GN=ABCB3 PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.166e-12 Identity = 35/63 (55.56%), Postives = 50/63 (79.37%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLS-KGGVYTALVK 187 E +V DA+D +M RT +V+AHRLST+++AD +AVV +G IVE GTHE L++ +GGVY +LV+ Sbjct: 1160 ERVVQDALDRVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGTHETLINIEGGVYASLVQ 1222
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: AB22B_ARATH (ABC transporter B family member 22 OS=Arabidopsis thaliana GN=ABCB22 PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.166e-12 Identity = 37/66 (56.06%), Postives = 48/66 (72.73%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKG--GVYTALVKRQ 193 E +V DA+ LM GRT +VIAHRLST+Q+ DT+ V+ G++VE GTH LL+KG GVY +LV Q Sbjct: 1193 ERMVQDALGRLMVGRTSVVIAHRLSTIQNCDTITVLDKGKVVECGTHSSLLAKGPTGVYFSLVSLQ 1258 HSP 2 Score: 68.9366 bits (167), Expect = 3.526e-11 Identity = 33/68 (48.53%), Postives = 50/68 (73.53%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSK-GGVYTALVKRQLQE 202 E +V +A+D+ GRT +VIAHRLST+++ D + V +G+IVE+G+HEEL+ G YT+LV+ Q+ E Sbjct: 553 ERVVQEALDNATIGRTTIVIAHRLSTIRNVDVICVFKNGQIVETGSHEELMENVDGQYTSLVRLQIME 620
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_RALSO (Lipid A export ATP-binding/permease protein msbA OS=Ralstonia solanacearum GN=msbA PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.440e-12 Identity = 34/64 (53.12%), Postives = 48/64 (75.00%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 193 E V A+++LM+GRT LVIAHRLST+++AD + V+ G+IVE+GTH ELL + G+Y L + Q Sbjct: 525 ERQVQAALEALMQGRTTLVIAHRLSTIENADRIVVLEHGQIVEAGTHRELLDRDGLYAGLHRIQ 588
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_FRATO (Lipid A export ATP-binding/permease protein msbA OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=msbA PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.440e-12 Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQ 199 E +V A++SL K T +VIAHRLSTV++AD + V+ G +VESG H+ELL +GG+YT L + LQ Sbjct: 544 ERVVQQALESLTKSCTTIVIAHRLSTVENADKIVVMDGGMVVESGKHQELLEQGGLYTRLYQSGLQ 609 The following BLAST results are available for this feature:
BLAST of FC925362 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 140
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Sequences
The
following sequences are available for this feature:
EST sequence >FC925362 ID=FC925362; Name=FC925362; organism=Citrus clementina; type=EST; length=789bpback to top |