FC925372

Overview
NameFC925372
Unique NameFC925372
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length411
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925372 vs. ExPASy Swiss-Prot
Match: DNAK2_SYNPX (Chaperone protein dnaK2 OS=Synechococcus sp. (strain WH8102) GN=dnaK2 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.396e-11
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 1
Query:  298 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVV 411
            KVVGIDLGTTNS V+ MEGGKPT++ NAEG RTTPSVV
Sbjct:    3 KVVGIDLGTTNSCVSVMEGGKPTVIANAEGFRTTPSVV 40          
BLAST of FC925372 vs. ExPASy Swiss-Prot
Match: DNAK_GLOVI (Chaperone protein dnaK OS=Gloeobacter violaceus GN=dnaK PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.741e-11
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 1
Query:  298 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVV 411
            KVVGIDLGTTNS VA +EGG+PT++ NAEG RTTPSVV
Sbjct:    3 KVVGIDLGTTNSVVAVLEGGQPTVIANAEGSRTTPSVV 40          
BLAST of FC925372 vs. ExPASy Swiss-Prot
Match: DNAK_BACA2 (Chaperone protein dnaK OS=Bacillus amyloliquefaciens (strain FZB42) GN=dnaK PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.498e-11
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 1
Query:  298 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVV 411
            KV+GIDLGTTNS VA +EGG+PT++ NAEG RTTPSVV
Sbjct:    3 KVIGIDLGTTNSCVAVLEGGEPTVIANAEGNRTTPSVV 40          
BLAST of FC925372 vs. ExPASy Swiss-Prot
Match: DNAK2_PROMM (Chaperone protein dnaK2 OS=Prochlorococcus marinus (strain MIT 9313) GN=dnaK2 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.498e-11
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 1
Query:  298 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVV 411
            KVVGIDLGTTNS VA MEGGKP ++ NAEG RTTPSVV
Sbjct:    3 KVVGIDLGTTNSCVAVMEGGKPVVIANAEGFRTTPSVV 40          
BLAST of FC925372 vs. ExPASy Swiss-Prot
Match: DNAK_GUITH (Chaperone protein dnaK OS=Guillardia theta GN=dnaK PE=3 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.792e-11
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 1
Query:  298 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVV 411
            KVVGIDLGTTNS VA MEGGKP ++ NAEG RTTPSVV
Sbjct:    3 KVVGIDLGTTNSVVAVMEGGKPAVIQNAEGFRTTPSVV 40          
BLAST of FC925372 vs. ExPASy Swiss-Prot
Match: DNAK_GRATL (Chaperone protein dnaK OS=Gracilaria tenuistipitata var. liui GN=dnaK PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.792e-11
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 1
Query:  298 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVV 411
            KVVGIDLGTTNS +A MEGGKPT++ N EG RTTPSVV
Sbjct:    3 KVVGIDLGTTNSVIAVMEGGKPTVIPNKEGLRTTPSVV 40          
BLAST of FC925372 vs. ExPASy Swiss-Prot
Match: DNAK_EUBE2 (Chaperone protein dnaK OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=dnaK PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.792e-11
Identity = 29/38 (76.32%), Postives = 33/38 (86.84%), Query Frame = 1
Query:  298 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVV 411
            K++GIDLGTTNS VA MEGGKP ++ NAEG RTTPSVV
Sbjct:    3 KIIGIDLGTTNSCVAVMEGGKPVVIANAEGLRTTPSVV 40          
BLAST of FC925372 vs. ExPASy Swiss-Prot
Match: DNAK3_SYNP6 (Chaperone protein dnaK 3 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=dnaK3 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.792e-11
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 1
Query:  298 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVV 411
            KV+GIDLGTTNS VA +EGGKP IVTN EG RTTPS+V
Sbjct:    3 KVIGIDLGTTNSCVAVLEGGKPIIVTNREGDRTTPSIV 40          
BLAST of FC925372 vs. ExPASy Swiss-Prot
Match: DNAK1_SYNE7 (Chaperone protein dnaK1 OS=Synechococcus elongatus (strain PCC 7942) GN=dnaK1 PE=3 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.792e-11
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 1
Query:  298 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVV 411
            KV+GIDLGTTNS VA +EGGKP IVTN EG RTTPS+V
Sbjct:    3 KVIGIDLGTTNSCVAVLEGGKPIIVTNREGDRTTPSIV 40          
The following BLAST results are available for this feature:
BLAST of FC925372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
DNAK2_SYNPX4.396e-1181.58Chaperone protein dnaK2 OS=Synechococcus sp. (stra... [more]
DNAK_GLOVI5.741e-1178.95Chaperone protein dnaK OS=Gloeobacter violaceus GN... [more]
DNAK_BACA27.498e-1176.32Chaperone protein dnaK OS=Bacillus amyloliquefacie... [more]
DNAK2_PROMM7.498e-1181.58Chaperone protein dnaK2 OS=Prochlorococcus marinus... [more]
DNAK_GUITH9.792e-1181.58Chaperone protein dnaK OS=Guillardia theta GN=dnaK... [more]
DNAK_GRATL9.792e-1178.95Chaperone protein dnaK OS=Gracilaria tenuistipitat... [more]
DNAK_EUBE29.792e-1176.32Chaperone protein dnaK OS=Eubacterium eligens (str... [more]
DNAK3_SYNP69.792e-1178.95Chaperone protein dnaK 3 OS=Synechococcus sp. (str... [more]
DNAK1_SYNE79.792e-1178.95Chaperone protein dnaK1 OS=Synechococcus elongatus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YI09FM1 TF Citrus clementina cDNA clone KN0AAP8YI09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925372 ID=FC925372; Name=FC925372; organism=Citrus clementina; type=EST; length=411bp
TACAAACCCTTATCTTCTCCACCAAAAGAAAGTCAACATTTTCACAGACC
CACAATCACAAACATGGCGACGTTTTCAACAACCCAAATTCACTCTCTGG
GTAACATTCCTTTGTCTTCAAGAAGGATTAAAGCCGCTAGTTTTCAATCA
TCCGCTCCGAGAACCGCCTTTTTCGGCCAAGCACTGGGCAGAAAACCGCA
TTTTGGCCTCCCAAACGCGGCTTTTTTGAAGTTAAACAATGAAAAAAACA
ATACTAGAAGAAGGTGTAACGTGGGTCCGGTGAGAGTGGTGAATGAGAAG
GTGGTGGGGATTGATTTGGGGACGACGAATTCGGCGGTGGCGGCGATGGA
AGGGGGGAAGCCGACGATAGTGACGAATGCCGAGGGGCAACGGACGACGC
CGTCTGTGGTT
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