FC925375

Overview
NameFC925375
Unique NameFC925375
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length494
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925375 vs. ExPASy Swiss-Prot
Match: FCSB_DICDI (Fatty acyl-CoA synthetase B OS=Dictyostelium discoideum GN=fcsB PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.410e-17
Identity = 37/111 (33.33%), Postives = 69/111 (62.16%), Query Frame = 1
Query:   43 IDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQDVIDNMY 375
            ++ V +YG+S +S ++AI++P+ ++   WA     + D K +C+N    + +L ++ +  K+  L GFE  KA+HL P  F  + +LLTP++K KR ++ K+++D I  +Y
Sbjct:  559 VEQVCIYGDSQKSCVIAIIHPHPESCSEWAGSKKTDKDIKEICKNQDFIKVVLDDIIKNCKKSGLHGFEIPKAIHLTPEAFSDQNNLLTPSFKLKRHEIKKYFEDEIKKLY 669          
BLAST of FC925375 vs. ExPASy Swiss-Prot
Match: FCSA_DICDI (Fatty acyl-CoA synthetase A OS=Dictyostelium discoideum GN=fcsA PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.155e-16
Identity = 47/129 (36.43%), Postives = 71/129 (55.04%), Query Frame = 1
Query:   13 LKNIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEF---ILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQDVIDNMYKSANR 390
            L++++        V+VYG+S  SFLV +V P+ + +++  A      D  +     K+KE    IL      A E KL GFE +K +++E  PF  E +LLTP++K KRPQL + YQ +ID +Y    R
Sbjct:  534 LESVFVRSPFASQVFVYGDSLNSFLVGVVVPDFEVVQKLFASKYPELDVSNHATLAKSKELYKEILSSFDACAAEAKLHGFEKLKHIYVEHEPFTEENNLLTPSFKPKRPQLKERYQTIIDTLYAEYKR 662          
BLAST of FC925375 vs. ExPASy Swiss-Prot
Match: ACSL3_RAT (Long-chain-fatty-acid--CoA ligase 3 OS=Rattus norvegicus GN=Acsl3 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.131e-13
Identity = 39/111 (35.14%), Postives = 59/111 (53.15%), Query Frame = 1
Query:   43 IDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQDVIDNMY 375
            ID++  Y NS+ S+++  V PN+  L   A   G NG ++ LC + + +  +L  LS  A    L+ FE    + L P P+  E  L+T  +K KR +L  HYQ  I+ MY
Sbjct:  607 IDNICAYANSYHSYVIGFVVPNQKELTELARTKGFNGTWEELCNSSEMENEVLKVLSEAAISASLEKFEIPLKIRLSPDPWTPETGLVTDAFKLKRKELKTHYQADIERMY 717          
BLAST of FC925375 vs. ExPASy Swiss-Prot
Match: ACSL4_RAT (Long-chain-fatty-acid--CoA ligase 4 OS=Rattus norvegicus GN=Acsl4 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.521e-13
Identity = 39/111 (35.14%), Postives = 59/111 (53.15%), Query Frame = 1
Query:   43 IDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQDVIDNMY 375
            ID++  +  S +S++++ V PN+  L   A + GV G +  +C NP  +  IL E+   A   KL+ FE    V L P P+  E  L+T  +K KR +L  HY   I+ MY
Sbjct:  557 IDNICAFAKSDQSYVISFVVPNQKKLTLLAQQKGVEGSWVDICNNPAMEAEILKEIREAANAMKLERFEIPIKVRLSPEPWTPETGLVTDAFKLKRKELKNHYLKDIERMY 667          
BLAST of FC925375 vs. ExPASy Swiss-Prot
Match: ACSL4_MOUSE (Long-chain-fatty-acid--CoA ligase 4 OS=Mus musculus GN=Acsl4 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.292e-13
Identity = 38/111 (34.23%), Postives = 59/111 (53.15%), Query Frame = 1
Query:   43 IDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQDVIDNMY 375
            ID++  +  S +S++++ V PN+  L   A + GV G +  +C NP  +  IL E+   A   KL+ FE    V L P P+  E  L+T  +K KR +L  HY   ++ MY
Sbjct:  598 IDNICAFAKSDQSYVISFVVPNQKKLTLLAQQKGVEGSWVDICNNPAMEAEILKEIREAANAMKLERFEIPIKVRLSPEPWTPETGLVTDAFKLKRKELKNHYLKDVERMY 708          
BLAST of FC925375 vs. ExPASy Swiss-Prot
Match: ACSL4_HUMAN (Long-chain-fatty-acid--CoA ligase 4 OS=Homo sapiens GN=ACSL4 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 3.292e-13
Identity = 39/111 (35.14%), Postives = 59/111 (53.15%), Query Frame = 1
Query:   43 IDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQDVIDNMY 375
            ID++  +  S +S++++ V PN+  L   A + GV G +  +C NP  +  IL E+   A   KL+ FE    V L P P+  E  L+T  +K KR +L  HY   I+ MY
Sbjct:  598 IDNICAFAKSDQSYVISFVVPNQKRLTLLAQQKGVEGTWVDICNNPAMEAEILKEIREAANAMKLERFEIPIKVRLSPEPWTPETGLVTDAFKLKRKELRNHYLKDIERMY 708          
BLAST of FC925375 vs. ExPASy Swiss-Prot
Match: ACSL3_PONAB (Long-chain-fatty-acid--CoA ligase 3 OS=Pongo abelii GN=ACSL3 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 3.292e-13
Identity = 37/111 (33.33%), Postives = 60/111 (54.05%), Query Frame = 1
Query:   43 IDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQDVIDNMY 375
            +D++  Y NS+ S+++  V PN+  L   A + G+ G ++ LC + + +  +L  LS  A    L+ FE    + L P P+  E  L+T  +K KR +L  HYQ  I+ MY
Sbjct:  607 VDNICAYANSYHSYVIGFVVPNQKELTELARKKGLKGTWEELCNSCEMENEVLKVLSEAAISASLEKFEIPVKIRLSPEPWTPETGLVTDAFKLKRKELKTHYQADIERMY 717          
BLAST of FC925375 vs. ExPASy Swiss-Prot
Match: ACSL3_HUMAN (Long-chain-fatty-acid--CoA ligase 3 OS=Homo sapiens GN=ACSL3 PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 3.292e-13
Identity = 37/111 (33.33%), Postives = 60/111 (54.05%), Query Frame = 1
Query:   43 IDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQDVIDNMY 375
            +D++  Y NS+ S+++  V PN+  L   A + G+ G ++ LC + + +  +L  LS  A    L+ FE    + L P P+  E  L+T  +K KR +L  HYQ  I+ MY
Sbjct:  607 VDNICAYANSYHSYVIGFVVPNQKELTELARKKGLKGTWEELCNSCEMENEVLKVLSEAAISASLEKFEIPVKIRLSPEPWTPETGLVTDAFKLKRKELKTHYQADIERMY 717          
BLAST of FC925375 vs. ExPASy Swiss-Prot
Match: ACSL3_MOUSE (Long-chain-fatty-acid--CoA ligase 3 OS=Mus musculus GN=Acsl3 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.615e-13
Identity = 38/111 (34.23%), Postives = 58/111 (52.25%), Query Frame = 1
Query:   43 IDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQDVIDNMY 375
            ID++  Y NS+ S+++  V PN+  L   A   G  G ++ LC + + +  +L  LS  A    L+ FE    + L P P+  E  L+T  +K KR +L  HYQ  I+ MY
Sbjct:  607 IDNICAYANSYHSYVIGFVVPNQKELTELARTKGFKGTWEELCNSSEMENEVLKVLSEAAISASLEKFEIPLKIRLSPDPWTPETGLVTDAFKLKRKELKTHYQADIERMY 717          
The following BLAST results are available for this feature:
BLAST of FC925375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
FCSB_DICDI6.410e-1733.33Fatty acyl-CoA synthetase B OS=Dictyostelium disco... [more]
FCSA_DICDI4.155e-1636.43Fatty acyl-CoA synthetase A OS=Dictyostelium disco... [more]
ACSL3_RAT1.131e-1335.14Long-chain-fatty-acid--CoA ligase 3 OS=Rattus norv... [more]
ACSL4_RAT2.521e-1335.14Long-chain-fatty-acid--CoA ligase 4 OS=Rattus norv... [more]
ACSL4_MOUSE3.292e-1334.23Long-chain-fatty-acid--CoA ligase 4 OS=Mus musculu... [more]
ACSL4_HUMAN3.292e-1335.14Long-chain-fatty-acid--CoA ligase 4 OS=Homo sapien... [more]
ACSL3_PONAB3.292e-1333.33Long-chain-fatty-acid--CoA ligase 3 OS=Pongo abeli... [more]
ACSL3_HUMAN3.292e-1333.33Long-chain-fatty-acid--CoA ligase 3 OS=Homo sapien... [more]
ACSL3_MOUSE5.615e-1334.23Long-chain-fatty-acid--CoA ligase 3 OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YI10FM1 TF Citrus clementina cDNA clone KN0AAP8YI10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925375 ID=FC925375; Name=FC925375; organism=Citrus clementina; type=EST; length=494bp
TGCTGTTGACCTTTGAAGAATATTTATGCTCTTGTATCTGCTATTGATTC
GGTATGGGTGTATGGGAACAGCTTTGAGTCCTTCCTTGTTGCCATTGTCA
ACCCCAACAAGGACGCACTTGAAAGATGGGCAGCTGAAAATGGTGTAAAT
GGAGACTTCAAGTCCCTCTGTGAAAATCCCAAGGCAAAAGAATTCATACT
CGGAGAGCTCTCAAGAGTTGCTAAAGAGAAAAAGTTGAAAGGTTTTGAAT
TCATTAAAGCTGTTCATCTTGAACCTGTCCCATTCGACATTGAACGTGAT
CTTCTTACTCCAACATATAAGAAGAAAAGGCCCCAATTGCTCAAACATTA
TCAGGATGTAATCGACAACATGTACAAGAGTGCAAACAGGCCTAGTTCTT
GAAAGAAAATAATTTTTGGAGTATGCTTCTGTGTGAAAAAGTTTCTTTTT
TCATTCAAGTCCTTGTGCTTCTTGTCAGACTGTACATATCGATA
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