FC925379

Overview
NameFC925379
Unique NameFC925379
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length534
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925379 vs. ExPASy Swiss-Prot
Match: PDI2_ARATH (Protein disulfide-isomerase 2 OS=Arabidopsis thaliana GN=At1g77510 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.772e-14
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 1
Query:  313 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEE--NELAHEYDVQGF 534
            V+ L   NF++ I  + F++VEFYAPWCGHCQ          +EL S N  + LAK+DA+EE   E A+EY +QGF
Sbjct:   31 VLTLDHSNFTETISKHDFIVVEFYAPWCGHCQKLAPEYEKAASELSSHNPPLALAKIDASEEANKEFANEYKIQGF 106          
BLAST of FC925379 vs. ExPASy Swiss-Prot
Match: PDIA4_CAEEL (Probable protein disulfide-isomerase A4 OS=Caenorhabditis elegans GN=C14B9.2 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 6.232e-14
Identity = 38/84 (45.24%), Postives = 48/84 (57.14%), Query Frame = 1
Query:  283 YKEPEIDDKDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 534
            YK P    ++VV L   NF D I NN+ V+VEFYAPWCGHC+           +LK+    V L KVDAT E +L  +Y V G+
Sbjct:  142 YKPPP---EEVVTLTTENFDDFISNNELVLVEFYAPWCGHCKKLAPEYEKAAQKLKAQGSKVKLGKVDATIEKDLGTKYGVSGY 222          

HSP 2 Score: 70.8626 bits (172), Expect = 4.466e-12
Identity = 34/77 (44.16%), Postives = 48/77 (62.34%), Query Frame = 1
Query:  304 DKDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 534
            D+ VVVL ++NF   ++ N  V+V+FYAPWCGHC+           E  S+  S+ LAKVDAT E EL   +++QG+
Sbjct:   35 DEGVVVLTDKNFDAFLKKNPSVLVKFYAPWCGHCKHLAPEY-----EKASSKVSIPLAKVDATVETELGKRFEIQGY 106          
BLAST of FC925379 vs. ExPASy Swiss-Prot
Match: PDIA1_CHICK (Protein disulfide-isomerase OS=Gallus gallus GN=P4HB PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.063e-13
Identity = 34/82 (41.46%), Postives = 51/82 (62.20%), Query Frame = 1
Query:  289 EPEIDDKDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 534
            EP  ++  V+VL+  NF   +  ++ ++VEFYAPWCGHC+           +LK+    + LAKVDATEE ELA ++ V+G+
Sbjct:   23 EPLEEEDGVLVLRAANFEQALAAHRHLLVEFYAPWCGHCKALAPEYAKAAAQLKAEGSEIRLAKVDATEEAELAQQFGVRGY 104          
BLAST of FC925379 vs. ExPASy Swiss-Prot
Match: PDI1_CAEEL (Protein disulfide-isomerase 1 OS=Caenorhabditis elegans GN=pdi-1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.368e-13
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 1
Query:  301 DDKDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 534
            D ++V+VL E NF + I  N+FV+V+FYAPWC HC+            LK     + LAKVDATE   LA +++V+G+
Sbjct:   21 DSENVLVLTESNFEETINGNEFVLVKFYAPWCVHCKSLAPKYDEAADLLKEEGSDIKLAKVDATENQALASKFEVRGY 98          
BLAST of FC925379 vs. ExPASy Swiss-Prot
Match: PDI1_ARATH (Probable protein disulfide-isomerase 1 OS=Arabidopsis thaliana GN=At1g21750 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.368e-13
Identity = 39/89 (43.82%), Postives = 53/89 (59.55%), Query Frame = 1
Query:  277 SEYKEPEIDDKD-VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEE--NELAHEYDVQGF 534
            S  +  E + K+ V+ L   NF+D I  + F++VEFYAPWCGHC+          + L S    VVLAK+DA+EE   E A +Y+VQGF
Sbjct:   19 SSIRSEETETKEFVLTLDHTNFTDTINKHDFIVVEFYAPWCGHCKQLAPEYEKAASALSSNVPPVVLAKIDASEETNREFATQYEVQGF 107          
BLAST of FC925379 vs. ExPASy Swiss-Prot
Match: PDI_DATGL (Protein disulfide-isomerase OS=Datisca glomerata GN=PDI PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.093e-13
Identity = 37/86 (43.02%), Postives = 51/86 (59.30%), Query Frame = 1
Query:  283 YKEPEIDDKDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEE--NELAHEYDVQGF 534
            Y E     + V+ L + NF D +  + F++VEFYAPWCGHC+          + L S +  V+LAKVDA EE   ELA E++V+GF
Sbjct:   25 YAEESESKEFVLTLDKSNFFDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASILSSHDPPVILAKVDANEEANKELASEFEVRGF 110          
BLAST of FC925379 vs. ExPASy Swiss-Prot
Match: PDIA4_RAT (Protein disulfide-isomerase A4 OS=Rattus norvegicus GN=Pdia4 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 3.093e-13
Identity = 32/73 (43.84%), Postives = 44/73 (60.27%), Query Frame = 1
Query:  316 VVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 534
            + L + NF DV+ N   ++VEFYAPWCGHC+           EL   +  + LAKVDATE+ +LA  +DV G+
Sbjct:  178 LTLTKENFDDVVNNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQTDLAKRFDVSGY 250          

HSP 2 Score: 66.6254 bits (161), Expect = 8.423e-11
Identity = 28/78 (35.90%), Postives = 46/78 (58.97%), Query Frame = 1
Query:  301 DDKDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 534
            ++  V VL + NF + + +   V++EFYAPWCGHC+          + LK  +  + +AK+DAT  + LA ++DV G+
Sbjct:   58 EENGVWVLNDENFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGY 135          
BLAST of FC925379 vs. ExPASy Swiss-Prot
Match: PDI_DROME (Protein disulfide-isomerase OS=Drosophila melanogaster GN=Pdi PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.276e-13
Identity = 34/77 (44.16%), Postives = 47/77 (61.04%), Query Frame = 1
Query:  304 DKDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 534
            ++ V+V    NF  +I +N+FV+VEFYAPWCGHC+           +L      + LAKVDAT E ELA +Y V+G+
Sbjct:   26 EEGVLVATVDNFKQLIADNEFVLVEFYAPWCGHCKALAPEYAKAAQQLAEKESPIKLAKVDATVEGELAEQYAVRGY 102          
BLAST of FC925379 vs. ExPASy Swiss-Prot
Match: PDIA4_MOUSE (Protein disulfide-isomerase A4 OS=Mus musculus GN=Pdia4 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 6.890e-13
Identity = 32/71 (45.07%), Postives = 43/71 (60.56%), Query Frame = 1
Query:  322 LKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 534
            L + NF DV+ N   ++VEFYAPWCGHC+           EL   +  + LAKVDATE+ +LA  +DV G+
Sbjct:  175 LTKDNFDDVVNNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQTDLAKRFDVSGY 245          

HSP 2 Score: 66.6254 bits (161), Expect = 8.423e-11
Identity = 33/91 (36.26%), Postives = 50/91 (54.95%), Query Frame = 1
Query:  286 KEPEIDDKD--------VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 534
            +E E DD D        V VL + NF + + +   V++EFYAPWCGHC+          + LK  +  + +AK+DAT  + LA ++DV G+
Sbjct:   40 EEEEEDDDDLEVKEENGVWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGY 130          
BLAST of FC925379 vs. ExPASy Swiss-Prot
Match: PDI_MEDSA (Protein disulfide-isomerase OS=Medicago sativa GN=PDI PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.005e-12
Identity = 38/86 (44.19%), Postives = 52/86 (60.47%), Query Frame = 1
Query:  286 KEPEIDDKD-VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEEN--ELAHEYDVQGF 534
            +E   D K+ V+ L   NF D ++ + F++VEFYAPWCGHC+          + L +    VVLAKVDA EE+  +LA E DV+GF
Sbjct:   25 EESSTDAKEFVLTLDNTNFHDTVKKHDFIVVEFYAPWCGHCKKLAPEYEKAASILSTHEPPVVLAKVDANEEHNKDLASENDVKGF 110          
The following BLAST results are available for this feature:
BLAST of FC925379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
PDI2_ARATH4.772e-1447.37Protein disulfide-isomerase 2 OS=Arabidopsis thali... [more]
PDIA4_CAEEL6.232e-1445.24Probable protein disulfide-isomerase A4 OS=Caenorh... [more]
PDIA1_CHICK1.063e-1341.46Protein disulfide-isomerase OS=Gallus gallus GN=P4... [more]
PDI1_CAEEL2.368e-1343.59Protein disulfide-isomerase 1 OS=Caenorhabditis el... [more]
PDI1_ARATH2.368e-1343.82Probable protein disulfide-isomerase 1 OS=Arabidop... [more]
PDI_DATGL3.093e-1343.02Protein disulfide-isomerase OS=Datisca glomerata G... [more]
PDIA4_RAT3.093e-1343.84Protein disulfide-isomerase A4 OS=Rattus norvegicu... [more]
PDI_DROME5.276e-1344.16Protein disulfide-isomerase OS=Drosophila melanoga... [more]
PDIA4_MOUSE6.890e-1345.07Protein disulfide-isomerase A4 OS=Mus musculus GN=... [more]
PDI_MEDSA2.005e-1244.19Protein disulfide-isomerase OS=Medicago sativa GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YH01FM1 TF Citrus clementina cDNA clone KN0AAP3YH01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925379 ID=FC925379; Name=FC925379; organism=Citrus clementina; type=EST; length=534bp
CGAACTCAGCGTGTGAAAGGAAAGAAAAAAATGTCAACTCGCTACATTCT
CCTTCTCTCACTCACAATTCTCCTCTTATTCTCTCCCGCTCTCGCCAAAT
CTCAAAACGACGCCGCTTCAGACGACGACGAAGATCTCAGCTTCCTCGAA
GAAGCCGACGCCGATACCAAATCCAAAGCCGCATCGCACCACCAGTTCGG
CGAGAAGGATGGCGATCCAGACGACGATGACTTCTCCGACGACTTCGACG
ACGAAAACTACCACGATTTCGACGACTCCGAGTACAAGGAGCCGGAGATC
GATGACAAAGACGTCGTTGTTTTGAAGGAAAGGAATTTTAGTGATGTCAT
CGAGAACAACAAGTTCGTGATGGTTGAATTCTACGCGCCGTGGTGCGGAC
ACTGTCAGGCCTTGGCTCCGGAATACGCGGCGGCCGCTACGGAGCTGAAG
TCCGCCAACGAAAGTGTGGTTTTGGCTAAAGTTGACGCGACTGAAGAGAA
TGAGCTGGCGCACGAGTACGACGTTCAGGGCTTC
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