FC925386

Overview
NameFC925386
Unique NameFC925386
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925386 vs. ExPASy Swiss-Prot
Match: MCFR_DICDI (Mitochondrial substrate carrier family protein R OS=Dictyostelium discoideum GN=mcfR PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12
Identity = 44/137 (32.12%), Postives = 66/137 (48.18%), Query Frame = 2
Query:  260 SSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYKGISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLA 670
            +S +V  L GGVS  ++K+  AP+ERVK+L Q + +M       + +  +       +K+EG+  LW+GNTA ++R FP  A+ +   DY K   NF  D+    + F                  Y LD  R RLA
Sbjct:    9 TSPMVTLLAGGVSGVIAKSTIAPLERVKILYQVKSKM-------YSFNSVYGLMKNIIKNEGLAGLWKGNTATILRIFPYSAIQWTSYDYLKN--NFVTDKKSSVQIFIAG----SLGFSCAILLTYPLDVIRARLA 132          
BLAST of FC925386 vs. ExPASy Swiss-Prot
Match: SCMC1_BOVIN (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Bos taurus GN=SLC25A24 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12
Identity = 50/166 (30.12%), Postives = 81/166 (48.80%), Query Frame = 2
Query:  173 FWAASQGTGLALVSPVSPIFVQAPSEKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYKGISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLA 670
            FW  S G  +     +   F +   EK    +    L GGV+ AVS+T+ AP++R+K+++Q      KS +++     I   F + VK+ GI SLWRGN  NVI+  P  A+ F   + +K+L   +  + G ++ F                F+Y ++  +TRLA
Sbjct:  165 FWKHSTGIDIGDSLTIPDEFTE--DEKKSGQWWRQLLAGGVAGAVSRTSTAPLDRLKVMMQVHGS--KSAKMN-----IYGGFQQMVKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQYKKLLTEEGQKIGTFERFVSG----SMAGATAQTFIYPMEVLKTRLA 317          
BLAST of FC925386 vs. ExPASy Swiss-Prot
Match: SCMC1_HUMAN (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Homo sapiens GN=SLC25A24 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 49/166 (29.52%), Postives = 81/166 (48.80%), Query Frame = 2
Query:  173 FWAASQGTGLALVSPVSPIFVQAPSEKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYKGISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLA 670
            FW  S G  +     +   F +   EK    +    L GG++ AVS+T+ AP++R+K+++Q      KS +++     I   F + VK+ GI SLWRGN  NVI+  P  A+ F   + +K+L   +  + G ++ F                F+Y ++  +TRLA
Sbjct:  165 FWKHSTGIDIGDSLTIPDEFTE--DEKKSGQWWRQLLAGGIAGAVSRTSTAPLDRLKIMMQVHGS--KSDKMN-----IFGGFRQMVKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQYKKLLTEEGQKIGTFERFISG----SMAGATAQTFIYPMEVMKTRLA 317          
BLAST of FC925386 vs. ExPASy Swiss-Prot
Match: SCMC1_MOUSE (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Mus musculus GN=Slc25a24 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 48/166 (28.92%), Postives = 80/166 (48.19%), Query Frame = 2
Query:  173 FWAASQGTGLALVSPVSPIFVQAPSEKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYKGISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLA 670
            FW  S G  +     +   F +   EK    +    L GGV+ AVS+T+ AP++R+K+++Q     +   +  + + G    F + VK+ GI SLWRGN  NVI+  P  A+ F   + +K+L   +  + G ++ F                F+Y ++  +TRLA
Sbjct:  165 FWKHSTGIDIGDSLTIPDEFTE--DEKKSGQWWRQLLAGGVAGAVSRTSTAPLDRLKVMMQ-----VHGSKSMNIFGG----FRQMVKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQYKKLLTEEGQKLGTFERFISG----SMAGATAQTFIYPMEVLKTRLA 315          
BLAST of FC925386 vs. ExPASy Swiss-Prot
Match: SCMC1_RABIT (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Oryctolagus cuniculus GN=SLC25A24 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 44/166 (26.51%), Postives = 80/166 (48.19%), Query Frame = 2
Query:  173 FWAASQGTGLALVSPVSPIFVQAPSEKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYKGISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLA 670
            FW  S G  +     +   F +   E+    +    L GG++ AVS+T+ AP++R+K+++Q     +   +  + + G    F + +K+ G+ SLWRGN  NVI+  P  A+ F   + +K+L   +  + G ++ F                F+Y ++  +TRLA
Sbjct:  165 FWKHSTGIDIGDSLTIPDEFTE--EERKSGQWWRQLLAGGIAGAVSRTSTAPLDRLKVMMQ-----VHGSKSMNIFGG----FRQMIKEGGVRSLWRGNGTNVIKIAPETAVKFWVYEQYKKLLTEEGQKIGTFERFISG----SMAGATAQTFIYPMEVMKTRLA 315          
The following BLAST results are available for this feature:
BLAST of FC925386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
MCFR_DICDI3.486e-1232.12Mitochondrial substrate carrier family protein R O... [more]
SCMC1_BOVIN4.553e-1230.12Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_HUMAN7.767e-1229.52Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_MOUSE2.260e-1128.92Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_RABIT6.575e-1126.51Calcium-binding mitochondrial carrier protein SCaM... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YI16FM1 TF Citrus clementina cDNA clone KN0AAP8YI16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925386 ID=FC925386; Name=FC925386; organism=Citrus clementina; type=EST; length=708bp
CGACCTTCTCAGGTCTCCATCTTCAGCTGCAAACATGGCAGATGGATCGT
ATCCATCCGTATTTCAGAAAATGCAAGGCCAGTCATACTTCATTTCTGGG
GTCTCCCCCAATTTGTATGCCCACAACTACAGTGTGGCAGGTTCCTTTGT
TAATAGAGGATCACAGAATTCTTTTTGGGCAGCAAGTCAGGGAACTGGCC
TGGCACTTGTGTCTCCTGTTTCTCCTATATTCGTACAAGCTCCATCAGAA
AAAAGTCTTTCTTCTTTTTTGGTGGATTTTCTCATGGGAGGAGTTTCAGC
AGCTGTTTCCAAGACTGCAGCTGCTCCTATTGAGCGGGTTAAGCTTTTGA
TTCAGAATCAAGATGAGATGATCAAGAGTGGTCGGCTCTCGCATCCGTAC
AAGGGGATTTCTGATTGCTTTGGTAGAACTGTTAAGGATGAAGGCATACT
ATCTCTTTGGAGAGGCAACACTGCCAATGTTATCAGATACTTCCCTACCC
AGGCCCTGAACTTTGCATTCAAGGATTACTTTAAGAGGCTGTTTAACTTC
AAGAAAGACAGAGATGGCTACTGGAAGTGGTTTGCTGGGAACTTGGCATC
TGGTGGGGCTGCTGGTGCTTCATCGCTTCTTTTTGTGTATTCGCTTGACT
ATGCAAGAACACGTTTGGCAAATGATGCTAAGGCAGCTAAAAAGGGTGGG
GGAAGGCA
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