FC925389

Overview
NameFC925389
Unique NameFC925389
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length604
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UBC3_YEAST (Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharomyces cerevisiae GN=CDC34 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.273e-15
Identity = 39/129 (30.23%), Postives = 67/129 (51.94%), Query Frame = 1
Query:   67 NLMVWHCSIPG-KAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNG----------WRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 420
            N+  W+  +      + + GGFF   + F ED+P  PP+ +F    +HPNVY  G +C+SIL++             W P  TV+ +L+ I  LL+ PN   PA  +    + ++  +YK+RV+ + ++
Sbjct:   38 NIFTWNIGVMVLNEDSIYHGGFFKAQMRFPEDFPFSPPQFRFTPAIYHPNVYRDGRLCISILHQSGDPMTDEPDAETWSPVQTVESVLISIVSLLEDPNINSPANVDAAVDYRKNPEQYKQRVKMEVER 166          
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UBC19_ARATH (Ubiquitin carrier protein E2 19 OS=Arabidopsis thaliana GN=UBC19 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.273e-15
Identity = 46/117 (39.32%), Postives = 63/117 (53.85%), Query Frame = 1
Query:   67 NLMVWHCSIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAK 417
            N+  W  +I G   T +EG  + L+L FS DYP K PK KF    FHPNV   G +CL IL +   W  A  V+ IL+ IQ LL +PN + P   +   L+  +  EY++ V +  K
Sbjct:   64 NIFCWKGTITGSKDTVFEGTEYRLSLTFSNDYPFKSPKVKFETCCFHPNVDLYGNICLDILQDK--WSSAYDVRTILLSIQSLLGEPNISSPLNNQAAQLW-SNQEEYRKMVEKLYK 177          
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UBC13_YEAST (Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyces cerevisiae GN=UBC13 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.275e-15
Identity = 40/119 (33.61%), Postives = 63/119 (52.94%), Query Frame = 1
Query:   67 NLMVWHCSIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 423
            NL  +  +I G   + +E G F L L+  +DYP + PK +F    +HPN+   G +CL +L     W PA+ ++ +L+ IQ LL  PNP DP   +    +I++    K + R+  K Y
Sbjct:   31 NLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLK--TNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLY 147          
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UB2G2_PONAB (Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.583e-15
Identity = 42/130 (32.31%), Postives = 61/130 (46.92%), Query Frame = 1
Query:   52 PDGSVNLMVWHCSIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNG-----------WRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQ 408
            P    N   W   I G   T +E G FP  L F  DYP  PPK +F    FHPN+YP G VC+SIL+               W P  +V++IL+ +  +L +PN    A  +   ++  D  ++ +  +Q
Sbjct:   28 PMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQ 157          
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UB2G2_MOUSE (Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus GN=Ube2g2 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.583e-15
Identity = 42/130 (32.31%), Postives = 61/130 (46.92%), Query Frame = 1
Query:   52 PDGSVNLMVWHCSIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNG-----------WRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQ 408
            P    N   W   I G   T +E G FP  L F  DYP  PPK +F    FHPN+YP G VC+SIL+               W P  +V++IL+ +  +L +PN    A  +   ++  D  ++ +  +Q
Sbjct:   28 PMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQ 157          
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UB2G2_HUMAN (Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens GN=UBE2G2 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.583e-15
Identity = 42/130 (32.31%), Postives = 61/130 (46.92%), Query Frame = 1
Query:   52 PDGSVNLMVWHCSIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNG-----------WRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQ 408
            P    N   W   I G   T +E G FP  L F  DYP  PPK +F    FHPN+YP G VC+SIL+               W P  +V++IL+ +  +L +PN    A  +   ++  D  ++ +  +Q
Sbjct:   28 PMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQ 157          
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UB2G2_BOVIN (Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.583e-15
Identity = 42/130 (32.31%), Postives = 61/130 (46.92%), Query Frame = 1
Query:   52 PDGSVNLMVWHCSIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNG-----------WRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQ 408
            P    N   W   I G   T +E G FP  L F  DYP  PPK +F    FHPN+YP G VC+SIL+               W P  +V++IL+ +  +L +PN    A  +   ++  D  ++ +  +Q
Sbjct:   28 PMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKVAKQ 157          
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UBC27_ARATH (Ubiquitin carrier protein E2 27 OS=Arabidopsis thaliana GN=UBC27 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.292e-15
Identity = 42/106 (39.62%), Postives = 58/106 (54.72%), Query Frame = 1
Query:   88 SIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNV-YPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQT-------EGYHLFIQDA 381
            +IPG  GT +EGG F + +   + YP +PPK +F    +HPN+   SG +CL IL +   W PA+T+K  LV IQ LL  P P DP          + Y +F+  A
Sbjct:   38 TIPGPIGTPYEGGTFQIDITMPDGYPFEPPKMQFSTKVWHPNISSQSGAICLDILKDQ--WSPALTLKTALVSIQALLSAPEPKDPQDAVVAEQYMKNYQVFVSTA 141          
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UBE2C_DICDI (Probable ubiquitin-conjugating enzyme E2 C OS=Dictyostelium discoideum GN=ube2c PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.523e-15
Identity = 45/115 (39.13%), Postives = 61/115 (53.04%), Query Frame = 1
Query:   52 PDGSVNLMVWHCSIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKR 396
            PDG  N+  W  +I G   T +E   F ++L F  DYP KPP  KF    FHPNV  +G +CL IL +   W P   V+ +L+ IQ LL +PN   P  +    L+  +  EYK+
Sbjct:   30 PDGD-NIFNWIGTIQGAKDTVYEQMEFKMSLKFPTDYPYKPPTVKFETQCFHPNVDNNGNICLDILKDK--WSPVYNVRSLLISIQSLLGEPNNESPLNSYAASLW-SNQDEYKK 140          
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UBC1_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.244e-14
Identity = 39/110 (35.45%), Postives = 57/110 (51.82%), Query Frame = 1
Query:   97 GKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 423
            G  GT +EGG F + +    +YP KPPK +F    +HPN+   +G +CL IL   N W P IT+K  L+ +Q LL  P P DP   E    +++D   + +      + Y
Sbjct:   41 GPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILK--NAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLY 148          
The following BLAST results are available for this feature:
BLAST of FC925389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 210
Match NameE-valueIdentityDescription
UBC3_YEAST3.273e-1530.23Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharo... [more]
UBC19_ARATH3.273e-1539.32Ubiquitin carrier protein E2 19 OS=Arabidopsis tha... [more]
UBC13_YEAST4.275e-1533.61Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyce... [more]
UB2G2_PONAB5.583e-1532.31Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii... [more]
UB2G2_MOUSE5.583e-1532.31Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus... [more]
UB2G2_HUMAN5.583e-1532.31Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens... [more]
UB2G2_BOVIN5.583e-1532.31Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus G... [more]
UBC27_ARATH7.292e-1539.62Ubiquitin carrier protein E2 27 OS=Arabidopsis tha... [more]
UBE2C_DICDI9.523e-1539.13Probable ubiquitin-conjugating enzyme E2 C OS=Dict... [more]
UBC1_YEAST1.244e-1435.45Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YH06FM1 TF Citrus clementina cDNA clone KN0AAP3YH06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925389 ID=FC925389; Name=FC925389; organism=Citrus clementina; type=EST; length=604bp
CGAATGTTTCTCTTTGAATTCTAGGGTTTCGTGGCAAAGCCTGAGACGTT
GCCGGACGGTTCGGTGAATCTGATGGTGTGGCATTGCTCTATTCCCGGAA
AAGCCGGAACTGATTGGGAGGGTGGTTTCTTCCCACTCACTCTCCACTTC
AGCGAAGATTACCCTAGCAAGCCACCAAAGTGCAAGTTTCCGCAAGGATT
TTTCCACCCTAATGTCTATCCATCTGGAACTGTTTGTCTATCAATCCTCA
ATGAGGACAATGGGTGGAGACCAGCCATCACAGTGAAGCAAATTCTTGTC
GGTATCCAAGACTTGTTGGACCAGCCAAATCCTGCAGATCCTGCACAAAC
AGAAGGTTATCATCTCTTCATTCAGGATGCTGCAGAGTACAAGAGAAGAG
TTCGGCAGCAAGCCAAGCAATACCCTGCACTCCTCTAAATTTATGTTCTG
GTTTTTTTATGGACTTTTATTAAACTCTTGGTAATTGTGAACTGTCTTTT
GTAAAATGCCATTGCTAAACTTGCTTTGTAAATAAAGTAACCATTTGTAA
CTGTTGCCTATGTTAAACTGCTTGGTTGAACCTGTCTTTAATCTCTTTGG
TGGA
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