FC925389

Overview
NameFC925389
Unique NameFC925389
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length604
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UBCB_DICDI (Ubiquitin conjugating enzyme E2 B OS=Dictyostelium discoideum GN=ubcB PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.624e-14
Identity = 37/120 (30.83%), Postives = 60/120 (50.00%), Query Frame = 1
Query:   67 NLMVWHCSIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPS-GTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 423
            NL  W  ++ G  G+ +E G F + +    DYP KPP  KF    +HPN+  S G +C  + +    W P + +  +L  I+ +L  PNP +P +TE    F  D   + +  ++  K+Y
Sbjct:   30 NLQKWKATVQGPEGSPFEKGVFSMDIDIPADYPFKPPTLKFTTKIYHPNIKTSDGAICAEVFST---WSPQLKILDVLTTIRSILTDPNPDNPLETEIAQQFKTDRNAFNKTAKEWTKKY 146          
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UB2SA_XENLA (Ubiquitin-conjugating enzyme E2 S-A OS=Xenopus laevis GN=ube2s-A PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.624e-14
Identity = 38/106 (35.85%), Postives = 58/106 (54.72%), Query Frame = 1
Query:   88 SIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVR 405
            +I G  GT + GG F + L   +D+P+ PPK  F    FHPNV P+G +C+++L  D  W   + ++ +L+ I+ LL  PNP      E   L +++  EY  R R
Sbjct:   46 TIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGPNGEICVNVLKRD--WTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARAR 149          
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UBE2T_XENLA (Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevis GN=ube2t PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.122e-14
Identity = 40/106 (37.74%), Postives = 57/106 (53.77%), Query Frame = 1
Query:   91 IPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN--EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRV 402
            I G +G+ +EGG F L +   E YP +PPK +F    +HPN+  +G +CL IL       WRPA+ +  +L  IQ L+ +PNP DP   +     I    +Y R V
Sbjct:   38 IIGGSGSPYEGGIFNLEIIVPERYPFEPPKIRFLTPIYHPNIDSAGRICLDILKLPPKGAWRPALNISTVLTSIQLLMSEPNPDDPLMAD-----ISSEFKYNRAV 138          
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UBE2S_RANCA (Ubiquitin-conjugating enzyme E2 S OS=Rana catesbeiana GN=ube2s PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.122e-14
Identity = 38/106 (35.85%), Postives = 59/106 (55.66%), Query Frame = 1
Query:   88 SIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVR 405
            SI G  GT + GG F + L   +D+P+ PPK  F    FHPNV  +G +C+++L +D  W+  + ++ +L+ I+ LL  PNP      E   L +++  EY  R R
Sbjct:   46 SIEGPEGTPYAGGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSSNGEICVNVLKKD--WKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRAR 149          
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UB2G1_RAT (Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norvegicus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 3.619e-14
Identity = 45/124 (36.29%), Postives = 64/124 (51.61%), Query Frame = 1
Query:   67 NLMVWHCSIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDA-AEYKRRV 402
            +L  W   I G   T +EGG F   L F +DYP +PPK KF    +HPNV  +G VC+SIL+E           +  W P  TV+ I++ +  +L  PN   PA  +    + +D   E+KR+V
Sbjct:   34 DLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKV 157          
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UB2G1_MOUSE (Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 3.619e-14
Identity = 45/124 (36.29%), Postives = 64/124 (51.61%), Query Frame = 1
Query:   67 NLMVWHCSIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDA-AEYKRRV 402
            +L  W   I G   T +EGG F   L F +DYP +PPK KF    +HPNV  +G VC+SIL+E           +  W P  TV+ I++ +  +L  PN   PA  +    + +D   E+KR+V
Sbjct:   34 DLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKV 157          
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UB2G1_MACFA (Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fascicularis GN=UBE2G1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.619e-14
Identity = 45/124 (36.29%), Postives = 64/124 (51.61%), Query Frame = 1
Query:   67 NLMVWHCSIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDA-AEYKRRV 402
            +L  W   I G   T +EGG F   L F +DYP +PPK KF    +HPNV  +G VC+SIL+E           +  W P  TV+ I++ +  +L  PN   PA  +    + +D   E+KR+V
Sbjct:   34 DLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEGRWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKV 157          
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UB2G1_HUMAN (Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens GN=UBE2G1 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 3.619e-14
Identity = 45/124 (36.29%), Postives = 64/124 (51.61%), Query Frame = 1
Query:   67 NLMVWHCSIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDA-AEYKRRV 402
            +L  W   I G   T +EGG F   L F +DYP +PPK KF    +HPNV  +G VC+SIL+E           +  W P  TV+ I++ +  +L  PN   PA  +    + +D   E+KR+V
Sbjct:   34 DLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKV 157          
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UBE2S_XENTR (Ubiquitin-conjugating enzyme E2 S OS=Xenopus tropicalis GN=ube2s PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.726e-14
Identity = 37/106 (34.91%), Postives = 59/106 (55.66%), Query Frame = 1
Query:   88 SIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVR 405
            +I G  GT + GG F + L   +D+P+ PPK  F    FHPNV  +G +C+++L +D  W+  + ++ +L+ I+ LL  PNP      E   L +++  EY  R R
Sbjct:   46 NIEGPEGTPYAGGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSTNGEICVNVLKKD--WKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRAR 149          
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UBE2S_DROMO (Ubiquitin-conjugating enzyme E2 S OS=Drosophila mojavensis GN=GI11085 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.726e-14
Identity = 39/109 (35.78%), Postives = 59/109 (54.13%), Query Frame = 1
Query:   91 IPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAK 417
            I G AGT +  G F + L  S+D+P  PPK  F    FHPNV  +G +C++ L +D  W+P + +K IL+ I+ LL  PNP      E   + ++   +Y +R R   +
Sbjct:   50 IDGPAGTPYAVGIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKD--WKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTE 156          
The following BLAST results are available for this feature:
BLAST of FC925389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 210
Match NameE-valueIdentityDescription
UBCB_DICDI1.624e-1430.83Ubiquitin conjugating enzyme E2 B OS=Dictyostelium... [more]
UB2SA_XENLA1.624e-1435.85Ubiquitin-conjugating enzyme E2 S-A OS=Xenopus lae... [more]
UBE2T_XENLA2.122e-1437.74Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevi... [more]
UBE2S_RANCA2.122e-1435.85Ubiquitin-conjugating enzyme E2 S OS=Rana catesbei... [more]
UB2G1_RAT3.619e-1436.29Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norve... [more]
UB2G1_MOUSE3.619e-1436.29Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus... [more]
UB2G1_MACFA3.619e-1436.29Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fasci... [more]
UB2G1_HUMAN3.619e-1436.29Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens... [more]
UBE2S_XENTR4.726e-1434.91Ubiquitin-conjugating enzyme E2 S OS=Xenopus tropi... [more]
UBE2S_DROMO4.726e-1435.78Ubiquitin-conjugating enzyme E2 S OS=Drosophila mo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YH06FM1 TF Citrus clementina cDNA clone KN0AAP3YH06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925389 ID=FC925389; Name=FC925389; organism=Citrus clementina; type=EST; length=604bp
CGAATGTTTCTCTTTGAATTCTAGGGTTTCGTGGCAAAGCCTGAGACGTT
GCCGGACGGTTCGGTGAATCTGATGGTGTGGCATTGCTCTATTCCCGGAA
AAGCCGGAACTGATTGGGAGGGTGGTTTCTTCCCACTCACTCTCCACTTC
AGCGAAGATTACCCTAGCAAGCCACCAAAGTGCAAGTTTCCGCAAGGATT
TTTCCACCCTAATGTCTATCCATCTGGAACTGTTTGTCTATCAATCCTCA
ATGAGGACAATGGGTGGAGACCAGCCATCACAGTGAAGCAAATTCTTGTC
GGTATCCAAGACTTGTTGGACCAGCCAAATCCTGCAGATCCTGCACAAAC
AGAAGGTTATCATCTCTTCATTCAGGATGCTGCAGAGTACAAGAGAAGAG
TTCGGCAGCAAGCCAAGCAATACCCTGCACTCCTCTAAATTTATGTTCTG
GTTTTTTTATGGACTTTTATTAAACTCTTGGTAATTGTGAACTGTCTTTT
GTAAAATGCCATTGCTAAACTTGCTTTGTAAATAAAGTAACCATTTGTAA
CTGTTGCCTATGTTAAACTGCTTGGTTGAACCTGTCTTTAATCTCTTTGG
TGGA
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