FC925389

Overview
NameFC925389
Unique NameFC925389
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length604
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UBE2H_BOVIN (Ubiquitin-conjugating enzyme E2 H OS=Bos taurus GN=UBE2H PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.867e-11
Identity = 35/111 (31.53%), Postives = 57/111 (51.35%), Query Frame = 1
Query:   97 GKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNV-YPSGTVCLSILNEDNGWRPAITVKQILVG-IQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 423
            G  GT +EGG + + +   + YP K P   F    FHPN+   SGTVCL ++N+   W     +  I    +  LL  PNP DP   +   +++    EYK+++++  ++Y
Sbjct:   40 GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQT--WTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKY 148          
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UBC6_ARATH (Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis thaliana GN=UBC6 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.745e-11
Identity = 39/131 (29.77%), Postives = 68/131 (51.91%), Query Frame = 1
Query:   37 KPETLPDGSVNLMVWHCSIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNV-YPSGTVCLSILNEDNGWRPAITVKQILVG-IQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 423
            K +T+ D   +L +++ +  G   + ++GG + + +   E YP K P   F    +HPNV   SG VCL ++N+   W P   +  +    +  LL  PNP+DP   E   L ++D A Y+ +V++  ++Y
Sbjct:   21 KVDTVND---DLQMFYVTFHGPTDSLYQGGVWKIKVELPEAYPYKSPSVGFVNKIYHPNVDESSGAVCLDVINQT--WSPMFDLINVFESFLPQLLLYPNPSDPFNGEAASLLMRDRAAYELKVKEYCEKY 146          
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UB2L6_HUMAN (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Homo sapiens GN=UBE2L6 PE=1 SV=4)

HSP 1 Score: 67.781 bits (164), Expect = 4.891e-11
Identity = 39/125 (31.20%), Postives = 64/125 (51.20%), Query Frame = 1
Query:   49 LPDGSVNLMVWHCSI-PGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQ-------TEGYHLFIQDAAEYKRR 399
            L     N++VWH  + P +     +   F L + F  +YP KPP  KF    +HPNV  +G +CL I++ +N W+P     Q+L  +  L+++PN  +P +       T+   LF ++A E+  R
Sbjct:   25 LSSDDANVLVWHALLLPDQPPYHLKA--FNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSEN-WKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLR 146          
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: Y1A1_ENCCU (Probable ubiquitin-conjugating enzyme E2 ECU01_1010 OS=Encephalitozoon cuniculi GN=ECU01_1010 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.388e-11
Identity = 38/138 (27.54%), Postives = 63/138 (45.65%), Query Frame = 1
Query:   52 PDGSV---NLMVWHCSIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED------------NGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 420
            P GS+   +  VW         + + G      + F   YP +PP  KF    FHPN+Y  G +C+SIL ED            + W P   ++ I++ I  +L+ PN + PA  +   ++  +  EY + V + A++
Sbjct:   56 PRGSMENRDYKVWDIYFTLGGDSLYAGRILKAVMKFPSSYPLRPPTLKFVSKMFHPNIYEDGKMCISILEEDKQQDSSVFGDPKDKWTPVQNIRTIVMSIVVILNSPNISSPANVDASVMYRDNPEEYIKEVIRIARE 193          
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UE2NL_HUMAN (Putative ubiquitin-conjugating enzyme E2 N-like OS=Homo sapiens GN=UBE2NL PE=5 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.388e-11
Identity = 38/98 (38.78%), Postives = 55/98 (56.12%), Query Frame = 1
Query:   52 PDGSVNLMVWHCSIPGKA-GTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 342
            PD S N   +H  I G++  + +EGG F   L  +E+YP   PK +F    +HPNV     + L IL +   W PA+ ++ +L+ IQ LL+ PNP DP
Sbjct:   27 PDES-NARYFHVVIAGESKDSPFEGGTFKRELLLAEEYPMAAPKVRFMTKIYHPNVDKLERISLDILKDK--WSPALQIRTVLLSIQALLNAPNPDDP 121          
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UBE2K_MOUSE (Ubiquitin-conjugating enzyme E2 K OS=Mus musculus GN=Ube2k PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 6.388e-11
Identity = 37/112 (33.04%), Postives = 57/112 (50.89%), Query Frame = 1
Query:   91 IPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 423
            I G   T +EGG + L +   E YP  PPK +F    +HPN+   +G +CL IL +   W  A+T++ +L+ +Q LL    P DP      + + Q+   +K+  R  A  Y
Sbjct:   43 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--WAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 152          
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UBE2K_HUMAN (Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens GN=UBE2K PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 6.388e-11
Identity = 37/112 (33.04%), Postives = 57/112 (50.89%), Query Frame = 1
Query:   91 IPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 423
            I G   T +EGG + L +   E YP  PPK +F    +HPN+   +G +CL IL +   W  A+T++ +L+ +Q LL    P DP      + + Q+   +K+  R  A  Y
Sbjct:   43 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--WAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 152          
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UBE2K_BOVIN (Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN=UBE2K PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 6.388e-11
Identity = 37/112 (33.04%), Postives = 57/112 (50.89%), Query Frame = 1
Query:   91 IPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 423
            I G   T +EGG + L +   E YP  PPK +F    +HPN+   +G +CL IL +   W  A+T++ +L+ +Q LL    P DP      + + Q+   +K+  R  A  Y
Sbjct:   43 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--WAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 152          
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UBC4_ARATH (Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis thaliana GN=UBC4 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.388e-11
Identity = 39/131 (29.77%), Postives = 67/131 (51.15%), Query Frame = 1
Query:   37 KPETLPDGSVNLMVWHCSIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQIL-VGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 423
            K ET+ DG   +  ++    G   + ++GG + + +   + YP K P   F    +HPNV   SG+VCL ++N+   W P   +  +    +  LL  PNP+DP   E   L ++D   Y++RV++  ++Y
Sbjct:   21 KVETINDG---MQEFYVEFNGPKDSLYQGGVWKIRVELPDAYPYKSPSVGFITKIYHPNVDELSGSVCLDVINQT--WSPMFDLVNVFETFLPQLLLYPNPSDPLNGEAAALMMRDRPAYEQRVKEYCEKY 146          
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: RCE1_ARATH (NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thaliana GN=RCE1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.388e-11
Identity = 37/121 (30.58%), Postives = 59/121 (48.76%), Query Frame = 1
Query:   46 TLPDGSVNLMVWHCSIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQ 408
            + P+G  +LM +  SI    G  +  G F  T   S  YP + PK K     +HPN+   G VCL+IL ED  W+P + +  ++ G+  L  +PN  DP   +   +   +   ++  VR+
Sbjct:   51 SFPNGKDDLMNFEVSIKPDDGY-YHNGTFVFTFQVSPVYPHEAPKVKCKTKVYHPNIDLEGNVCLNILRED--WKPVLNINTVIYGLFHLFTEPNSEDPLNHDAAAVLRDNPKLFETNVRR 168          
The following BLAST results are available for this feature:
BLAST of FC925389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 210
Match NameE-valueIdentityDescription
UBE2H_BOVIN2.867e-1131.53Ubiquitin-conjugating enzyme E2 H OS=Bos taurus GN... [more]
UBC6_ARATH3.745e-1129.77Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis t... [more]
UB2L6_HUMAN4.891e-1131.20Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Homo s... [more]
Y1A1_ENCCU6.388e-1127.54Probable ubiquitin-conjugating enzyme E2 ECU01_101... [more]
UE2NL_HUMAN6.388e-1138.78Putative ubiquitin-conjugating enzyme E2 N-like OS... [more]
UBE2K_MOUSE6.388e-1133.04Ubiquitin-conjugating enzyme E2 K OS=Mus musculus ... [more]
UBE2K_HUMAN6.388e-1133.04Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens ... [more]
UBE2K_BOVIN6.388e-1133.04Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN... [more]
UBC4_ARATH6.388e-1129.77Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis t... [more]
RCE1_ARATH6.388e-1130.58NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YH06FM1 TF Citrus clementina cDNA clone KN0AAP3YH06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925389 ID=FC925389; Name=FC925389; organism=Citrus clementina; type=EST; length=604bp
CGAATGTTTCTCTTTGAATTCTAGGGTTTCGTGGCAAAGCCTGAGACGTT
GCCGGACGGTTCGGTGAATCTGATGGTGTGGCATTGCTCTATTCCCGGAA
AAGCCGGAACTGATTGGGAGGGTGGTTTCTTCCCACTCACTCTCCACTTC
AGCGAAGATTACCCTAGCAAGCCACCAAAGTGCAAGTTTCCGCAAGGATT
TTTCCACCCTAATGTCTATCCATCTGGAACTGTTTGTCTATCAATCCTCA
ATGAGGACAATGGGTGGAGACCAGCCATCACAGTGAAGCAAATTCTTGTC
GGTATCCAAGACTTGTTGGACCAGCCAAATCCTGCAGATCCTGCACAAAC
AGAAGGTTATCATCTCTTCATTCAGGATGCTGCAGAGTACAAGAGAAGAG
TTCGGCAGCAAGCCAAGCAATACCCTGCACTCCTCTAAATTTATGTTCTG
GTTTTTTTATGGACTTTTATTAAACTCTTGGTAATTGTGAACTGTCTTTT
GTAAAATGCCATTGCTAAACTTGCTTTGTAAATAAAGTAACCATTTGTAA
CTGTTGCCTATGTTAAACTGCTTGGTTGAACCTGTCTTTAATCTCTTTGG
TGGA
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