FC925389

Overview
NameFC925389
Unique NameFC925389
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length604
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.992e-21
Identity = 48/119 (40.34%), Postives = 68/119 (57.14%), Query Frame = 1
Query:   67 NLMVWHCSIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 423
            +L  W  +I G   + ++GG F LT+HF  DYP KPPK  F    +HPN+  +G++CL IL     W PA+TV ++L+ I  LL  PNP DP   E  H +  D  +Y R  R+  ++Y
Sbjct:   29 DLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQ--WSPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKADREKYNRLAREWTQKY 145          
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.213e-21
Identity = 46/115 (40.00%), Postives = 67/115 (58.26%), Query Frame = 1
Query:   79 WHCSIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 423
            W  +I G + + + GG F +T+HF  DYP KPPK  F    FHPN+  +G++CL IL E   W PA+T+ ++L+ I  LL  PNP DP   E  H++  D  +Y+   R   ++Y
Sbjct:   33 WQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ--WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARTWTQKY 145          
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.809e-21
Identity = 46/119 (38.66%), Postives = 69/119 (57.98%), Query Frame = 1
Query:   67 NLMVWHCSIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 423
            ++  W  +I G A + + GG F +T+HF  DYP KPPK  F    +HPN+  +G++CL IL E   W PA+TV ++L+ I  LL  PNP DP   E  H++  D  +Y+   +   ++Y
Sbjct:   29 DMFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTKVYHPNINSNGSICLDILKEQ--WSPALTVSKVLLSICSLLTDPNPDDPLVPEIAHIYKTDRVKYESTAQSWTQKY 145          
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.809e-21
Identity = 46/115 (40.00%), Postives = 67/115 (58.26%), Query Frame = 1
Query:   79 WHCSIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 423
            W  +I G + + + GG F +T+HF  DYP KPPK  F    FHPN+  +G++CL IL E   W PA+T+ ++L+ I  LL  PNP DP   E  H++  D  +Y+   R   ++Y
Sbjct:   33 WQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ--WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARSWTQKY 145          
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.893e-21
Identity = 47/119 (39.50%), Postives = 68/119 (57.14%), Query Frame = 1
Query:   67 NLMVWHCSIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 423
            +L  W  SI G A + + GG F L++HF  DYP KPPK  F    +HPN+  +G +CL IL +   W PA+T+ ++L+ I  LL   NP DP   E  H++  D  +Y+   R+  K+Y
Sbjct:   30 DLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDILKDQ--WSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATAREWTKKY 146          
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.161e-20
Identity = 44/119 (36.97%), Postives = 68/119 (57.14%), Query Frame = 1
Query:   67 NLMVWHCSIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 423
            +L  W  +I G   + + GG F L +HF  DYP KPPK  F    +HPN+  +G++CL IL +   W PA+T+ ++L+ I  +L  PNP +P   E  H++  D A Y+   R+  ++Y
Sbjct:   29 DLFHWQATIMGPGDSPYSGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQ--WSPALTISKVLLSICSMLTDPNPDEPLVPEIAHVYKTDRARYEATAREWTRKY 145          
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.981e-20
Identity = 44/119 (36.97%), Postives = 69/119 (57.98%), Query Frame = 1
Query:   67 NLMVWHCSIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 423
            +L  W  +I G + + + GG F L +HF  DYP KPPK  F    +HPN+  +G++CL IL +   W PA+T+ ++L+ I  +L  PNP DP   E  H++    A+Y+   R+  ++Y
Sbjct:   29 DLFHWQATIMGPSDSPYAGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQ--WSPALTISKVLLSICSMLTDPNPDDPLVPEIAHVYKTARAQYESTAREWTRKY 145          
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.981e-20
Identity = 44/115 (38.26%), Postives = 67/115 (58.26%), Query Frame = 1
Query:   79 WHCSIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 423
            W  +I G   + + GG F +++HF  DYP KPPK  F    +HPN+  +G++CL IL E   W PA+T+ ++L+ I  LL  PNP DP   E  H++  D ++Y+   R   ++Y
Sbjct:   33 WQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSFKTKVYHPNINSNGSICLDILKEQ--WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYESTARSWTQKY 145          
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UB2D1_MOUSE (Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus GN=Ube2d1 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.981e-20
Identity = 46/119 (38.66%), Postives = 68/119 (57.14%), Query Frame = 1
Query:   67 NLMVWHCSIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 423
            +L  W  +I G   + ++GG F LT+HF  DYP KPPK  F    +HPN+  +G++CL IL     W PA+TV ++L+ I  LL  PNP DP   +   ++  D  +Y R  R+  ++Y
Sbjct:   29 DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQ--WSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKY 145          
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UB2D1_HUMAN (Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.981e-20
Identity = 46/119 (38.66%), Postives = 68/119 (57.14%), Query Frame = 1
Query:   67 NLMVWHCSIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 423
            +L  W  +I G   + ++GG F LT+HF  DYP KPPK  F    +HPN+  +G++CL IL     W PA+TV ++L+ I  LL  PNP DP   +   ++  D  +Y R  R+  ++Y
Sbjct:   29 DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQ--WSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKY 145          
The following BLAST results are available for this feature:
BLAST of FC925389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 210
Match NameE-valueIdentityDescription
UB2D4_HUMAN3.992e-2140.34Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens... [more]
UBC9_ARATH5.213e-2140.00SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC30_ARATH6.809e-2138.66Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC10_ARATH6.809e-2140.00Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBC4_YEAST8.893e-2139.50Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]
UBC1_COLGL1.161e-2036.97Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]
UBC1_MAGGR1.981e-2036.97Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]
UBC11_ARATH1.981e-2038.26Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UB2D1_MOUSE1.981e-2038.66Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus... [more]
UB2D1_HUMAN1.981e-2038.66Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YH06FM1 TF Citrus clementina cDNA clone KN0AAP3YH06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925389 ID=FC925389; Name=FC925389; organism=Citrus clementina; type=EST; length=604bp
CGAATGTTTCTCTTTGAATTCTAGGGTTTCGTGGCAAAGCCTGAGACGTT
GCCGGACGGTTCGGTGAATCTGATGGTGTGGCATTGCTCTATTCCCGGAA
AAGCCGGAACTGATTGGGAGGGTGGTTTCTTCCCACTCACTCTCCACTTC
AGCGAAGATTACCCTAGCAAGCCACCAAAGTGCAAGTTTCCGCAAGGATT
TTTCCACCCTAATGTCTATCCATCTGGAACTGTTTGTCTATCAATCCTCA
ATGAGGACAATGGGTGGAGACCAGCCATCACAGTGAAGCAAATTCTTGTC
GGTATCCAAGACTTGTTGGACCAGCCAAATCCTGCAGATCCTGCACAAAC
AGAAGGTTATCATCTCTTCATTCAGGATGCTGCAGAGTACAAGAGAAGAG
TTCGGCAGCAAGCCAAGCAATACCCTGCACTCCTCTAAATTTATGTTCTG
GTTTTTTTATGGACTTTTATTAAACTCTTGGTAATTGTGAACTGTCTTTT
GTAAAATGCCATTGCTAAACTTGCTTTGTAAATAAAGTAACCATTTGTAA
CTGTTGCCTATGTTAAACTGCTTGGTTGAACCTGTCTTTAATCTCTTTGG
TGGA
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