FC925389

Overview
NameFC925389
Unique NameFC925389
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length604
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UB2E1_HUMAN (Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens GN=UBE2E1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.046e-18
Identity = 45/119 (37.82%), Postives = 67/119 (56.30%), Query Frame = 1
Query:   67 NLMVWHCSIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 423
            N+  W  +I G  G+ +EGG F L + F+ +YP KPPK  F    +H N+   G +CL IL ++  W PA+T+ ++L+ I  LL   NPADP        ++ + AE+ R  RQ  K+Y
Sbjct:   75 NIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDN--WSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRY 191          
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UBC11_SCHPO (Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosaccharomyces pombe GN=ubc11 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.202e-17
Identity = 46/123 (37.40%), Postives = 67/123 (54.47%), Query Frame = 1
Query:   52 PDGSVNLMVWHCSIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 420
            PD   NL+ W  +I G + T +EG  F +++ F  +YP  PP   F    +HPNV  SG +CL IL +   W     V+ IL+ +Q LL +PN A P   +   L+ +D  EYKR + Q+ K+
Sbjct:   52 PDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGNICLDILKDK--WSAVYNVQTILLSLQSLLGEPNNASPLNAQAAELWSKDPIEYKRLLMQRYKE 172          
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UBC7_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC7 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.497e-17
Identity = 42/129 (32.56%), Postives = 65/129 (50.39%), Query Frame = 1
Query:   52 PDGSVNLMVWHCSIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVR 405
            P    N+ +W C I G   T +  G F   L F +DYP  PPK  F     HPN+YP+G VC+SIL+            +  W P  +V++IL+ +  +L +PN    A  +   L+  +  E++R+V+
Sbjct:   28 PKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVK 156          
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UBC20_ARATH (Ubiquitin carrier protein E2 20 OS=Arabidopsis thaliana GN=UBC20 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.965e-17
Identity = 48/117 (41.03%), Postives = 65/117 (55.56%), Query Frame = 1
Query:   67 NLMVWHCSIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAK 417
            N+  W  +I G   T +EG  + L+L FS DYP KPPK KF    FHPNV   G +CL IL +   W  A  V+ IL+ IQ LL +PN + P  T+   L+  +  EY++ V +  K
Sbjct:   63 NIFCWKGTITGSKDTVFEGTEYRLSLSFSNDYPFKPPKVKFETCCFHPNVDVYGNICLDILQDK--WSSAYDVRTILLSIQSLLGEPNISSPLNTQAAQLW-SNQEEYRKMVEKLYK 176          
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UBC_ASFB7 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (strain Badajoz 1971 Vero-adapted) GN=UBC PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.017e-16
Identity = 43/129 (33.33%), Postives = 66/129 (51.16%), Query Frame = 1
Query:   67 NLMVWHCSIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNG------WRPAITVKQILVGIQDLLDQPNPADPAQTEG-----YHLFIQDAAEYKRRVRQQAKQ 420
            N+  W   + G   T +EGG F   + F  +YP  PPK  F    +HPN+YP G +C+SIL+ DN       W PA  +  IL+ +  LL++PNP  PA  +       +++ +D   Y   V++  K+
Sbjct:   29 NITEWDVILRGPPDTLYEGGLFKAKVAFPPEYPYAPPKLTFTSEMWHPNIYPDGRLCISILHGDNAEEQGMTWSPAQKIDTILLSVISLLNEPNPDSPANVDAAKSYRKYVYKEDLESYPMEVKKTVKK 157          
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UBE2N_DROME (Ubiquitin-conjugating enzyme E2 N OS=Drosophila melanogaster GN=ben PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.329e-16
Identity = 45/125 (36.00%), Postives = 67/125 (53.60%), Query Frame = 1
Query:   49 LPDGSVNLMVWHCSIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 423
            +PD + N   +H  + G   + +EGG F L L   EDYP   PK +F    +HPN+   G +CL +L +   W PA+ ++ IL+ IQ LL  PNP DP   +   L+  + AE  R  R+  ++Y
Sbjct:   26 IPDEN-NARYFHVIVTGPNDSPFEGGVFKLELFLPEDYPMSAPKVRFITKIYHPNIDRLGRICLDVLKDK--WSPALQIRTILLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAREWTQKY 147          
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UBC7_WHEAT (Ubiquitin-conjugating enzyme E2 7 OS=Triticum aestivum GN=UBC7 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.329e-16
Identity = 44/133 (33.08%), Postives = 71/133 (53.38%), Query Frame = 1
Query:   67 NLMVWHCSIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL---NEDNG-------WRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQYPALL 435
            N+  W  +I G   T ++GG+F   + F ++YP+ PP  +F    +HPNVYP G VC+SI    ++ NG       W P  TV+ I++ I  +L  PN   PA  E    + +   E+K++VR+  ++   +L
Sbjct:   36 NVFEWQVTIIGPPETLYDGGYFNAIMSFPQNYPNSPPTVRFTSEMWHPNVYPDGRVCISIHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANIEAAKDWREKQDEFKKKVRRAVRKSQEML 168          
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UBC7_CAEEL (Probable ubiquitin-conjugating enzyme E2 7 OS=Caenorhabditis elegans GN=ubc-7 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.329e-16
Identity = 44/121 (36.36%), Postives = 63/121 (52.07%), Query Frame = 1
Query:   79 WHCSIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQ 408
            W   + G   T +EGGFF   L F  DYP KPPK KF    +HPN+   G VC+SIL++           +  W P  TV+ IL+ +  +L  PN   PA  +   +  ++ AE+K++V Q
Sbjct:   36 WEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKKKVAQ 156          
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UBC13_ARATH (Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis thaliana GN=UBC13 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.736e-16
Identity = 43/123 (34.96%), Postives = 63/123 (51.22%), Query Frame = 1
Query:   67 NLMVWHCSIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN-----------EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRV 402
            N+  W  +I G   T +EGGFF   + F ++YP+ PP  +F    +HPNVYP G VC+SIL+               W P  TV+ I++ I  +L  PN   PA  E    + +   E+K++V
Sbjct:   33 NIFEWSVTIIGPPDTLYEGGFFYAIMSFPQNYPNSPPTVRFTSDIWHPNVYPDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWREKRDEFKKKV 155          
BLAST of FC925389 vs. ExPASy Swiss-Prot
Match: UBE2C_SPISO (Ubiquitin-conjugating enzyme E2 C OS=Spisula solidissima GN=UBE2C PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.267e-16
Identity = 47/122 (38.52%), Postives = 67/122 (54.92%), Query Frame = 1
Query:   52 PDGSVNLMVWHCSIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAK 417
            PDG  NL  W  ++ G   T +E   + LTL F  DYP KPP  KF    +HPNV  SG +CL IL E+  W  +  V+ IL+ +Q LL +PN A P   +   ++  +  EYK+ + ++ K
Sbjct:   54 PDGD-NLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKEN--WTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYKKVLHEKYK 171          
The following BLAST results are available for this feature:
BLAST of FC925389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 210
Match NameE-valueIdentityDescription
UB2E1_HUMAN7.046e-1837.82Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens... [more]
UBC11_SCHPO1.202e-1737.40Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosa... [more]
UBC7_YEAST3.497e-1732.56Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBC20_ARATH5.965e-1741.03Ubiquitin carrier protein E2 20 OS=Arabidopsis tha... [more]
UBC_ASFB71.017e-1633.33Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBE2N_DROME1.329e-1636.00Ubiquitin-conjugating enzyme E2 N OS=Drosophila me... [more]
UBC7_WHEAT1.329e-1633.08Ubiquitin-conjugating enzyme E2 7 OS=Triticum aest... [more]
UBC7_CAEEL1.329e-1636.36Probable ubiquitin-conjugating enzyme E2 7 OS=Caen... [more]
UBC13_ARATH1.736e-1634.96Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis ... [more]
UBE2C_SPISO2.267e-1638.52Ubiquitin-conjugating enzyme E2 C OS=Spisula solid... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YH06FM1 TF Citrus clementina cDNA clone KN0AAP3YH06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925389 ID=FC925389; Name=FC925389; organism=Citrus clementina; type=EST; length=604bp
CGAATGTTTCTCTTTGAATTCTAGGGTTTCGTGGCAAAGCCTGAGACGTT
GCCGGACGGTTCGGTGAATCTGATGGTGTGGCATTGCTCTATTCCCGGAA
AAGCCGGAACTGATTGGGAGGGTGGTTTCTTCCCACTCACTCTCCACTTC
AGCGAAGATTACCCTAGCAAGCCACCAAAGTGCAAGTTTCCGCAAGGATT
TTTCCACCCTAATGTCTATCCATCTGGAACTGTTTGTCTATCAATCCTCA
ATGAGGACAATGGGTGGAGACCAGCCATCACAGTGAAGCAAATTCTTGTC
GGTATCCAAGACTTGTTGGACCAGCCAAATCCTGCAGATCCTGCACAAAC
AGAAGGTTATCATCTCTTCATTCAGGATGCTGCAGAGTACAAGAGAAGAG
TTCGGCAGCAAGCCAAGCAATACCCTGCACTCCTCTAAATTTATGTTCTG
GTTTTTTTATGGACTTTTATTAAACTCTTGGTAATTGTGAACTGTCTTTT
GTAAAATGCCATTGCTAAACTTGCTTTGTAAATAAAGTAACCATTTGTAA
CTGTTGCCTATGTTAAACTGCTTGGTTGAACCTGTCTTTAATCTCTTTGG
TGGA
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