FC925393

Overview
NameFC925393
Unique NameFC925393
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925393 vs. ExPASy Swiss-Prot
Match: PYGM_MOUSE (Glycogen phosphorylase, muscle form OS=Mus musculus GN=Pygm PE=1 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 3.567e-23
Identity = 55/141 (39.01%), Postives = 81/141 (57.45%), Query Frame = 2
Query:  311 SAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGL 733
            S +  N + H+ ++         P   +FA A +VRD L+ +W  T  H+ + D K+ YYLS+EF  GRTL N + +L ++NA  +A   LG  +EE+ E E+D            +CFLDSMATL L A+GYG+RY +G+
Sbjct:   26 SELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGI 166          
BLAST of FC925393 vs. ExPASy Swiss-Prot
Match: PYGB_PONAB (Glycogen phosphorylase, brain form OS=Pongo abelii GN=PYGB PE=2 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 4.658e-23
Identity = 54/118 (45.76%), Postives = 73/118 (61.86%), Query Frame = 2
Query:  380 PEQAFFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGL 733
            P    FA A +VRD L+ +W  T  H+ + D K+ YYLS+EF  GRTL N + +L +QNA  +A+  LG  LEE+ E E+D            +CFLDSMATL L A+GYG+RY +G+
Sbjct:   49 PRDYLFALAHTVRDHLVGRWIRTQQHYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQNACDEAIYQLGLDLEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGI 166          
BLAST of FC925393 vs. ExPASy Swiss-Prot
Match: PHS2_DICDI (Glycogen phosphorylase 2 OS=Dictyostelium discoideum GN=glpD PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 6.084e-23
Identity = 50/132 (37.88%), Postives = 84/132 (63.64%), Query Frame = 2
Query:  338 HVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGL 733
            HV+Y+   + ++     +F A +   RDRLI++W +T   F + ++KQ  Y+S+EFL GR+L N++ +L +   Y+DAL +LG  LE++ ++E+D            +CF+DS+AT N P +GYGLRY++G+
Sbjct:  121 HVEYTLAQTKSECTDFSSFQALSYCTRDRLIERWKDTKLFFKQKNVKQVNYMSLEFLLGRSLQNSLSALGLVGKYSDALMDLGFKLEDLYDEERDAGLGNGGLGRLAACFMDSLATCNFPGYGYGLRYKFGM 252          
BLAST of FC925393 vs. ExPASy Swiss-Prot
Match: PYGM_RABIT (Glycogen phosphorylase, muscle form OS=Oryctolagus cuniculus GN=PYGM PE=1 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 7.946e-23
Identity = 54/139 (38.85%), Postives = 80/139 (57.55%), Query Frame = 2
Query:  317 IASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGL 733
            +  N + H+ ++         P   +FA A +VRD L+ +W  T  H+ + D K+ YYLS+EF  GRTL N + +L ++NA  +A   LG  +EE+ E E+D            +CFLDSMATL L A+GYG+RY +G+
Sbjct:   28 LKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGI 166          
BLAST of FC925393 vs. ExPASy Swiss-Prot
Match: PYGM_MACFA (Glycogen phosphorylase, muscle form OS=Macaca fascicularis GN=PYGM PE=2 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 7.946e-23
Identity = 54/139 (38.85%), Postives = 80/139 (57.55%), Query Frame = 2
Query:  317 IASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGL 733
            +  N + H+ ++         P   +FA A +VRD L+ +W  T  H+ + D K+ YYLS+EF  GRTL N + +L ++NA  +A   LG  +EE+ E E+D            +CFLDSMATL L A+GYG+RY +G+
Sbjct:   28 LKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGI 166          
BLAST of FC925393 vs. ExPASy Swiss-Prot
Match: PYGM_HUMAN (Glycogen phosphorylase, muscle form OS=Homo sapiens GN=PYGM PE=1 SV=6)

HSP 1 Score: 107.457 bits (267), Expect = 7.946e-23
Identity = 54/139 (38.85%), Postives = 80/139 (57.55%), Query Frame = 2
Query:  317 IASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGL 733
            +  N + H+ ++         P   +FA A +VRD L+ +W  T  H+ + D K+ YYLS+EF  GRTL N + +L ++NA  +A   LG  +EE+ E E+D            +CFLDSMATL L A+GYG+RY +G+
Sbjct:   28 LKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGI 166          
BLAST of FC925393 vs. ExPASy Swiss-Prot
Match: PYGB_RAT (Glycogen phosphorylase, brain form (Fragment) OS=Rattus norvegicus GN=Pygb PE=1 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 1.038e-22
Identity = 54/118 (45.76%), Postives = 72/118 (61.02%), Query Frame = 2
Query:  380 PEQAFFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGL 733
            P   FFA A +VRD L+ +W  T  H+ + D K+ YYLS+EF  GRTL N + +L +Q A  +A   LG  LEE+ E E+D            +CFLDSMATL L A+GYG+RY +G+
Sbjct:   49 PRDYFFALAHTVRDHLVGRWIRTQQHYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQTACDEATYQLGLDLEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGI 166          
BLAST of FC925393 vs. ExPASy Swiss-Prot
Match: PYGB_MOUSE (Glycogen phosphorylase, brain form OS=Mus musculus GN=Pygb PE=1 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 1.038e-22
Identity = 54/118 (45.76%), Postives = 72/118 (61.02%), Query Frame = 2
Query:  380 PEQAFFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGL 733
            P   FFA A +VRD L+ +W  T  H+ + D K+ YYLS+EF  GRTL N + +L +Q A  +A   LG  LEE+ E E+D            +CFLDSMATL L A+GYG+RY +G+
Sbjct:   49 PRDYFFALAHTVRDHLVGRWIRTQQHYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQTACDEATYQLGLDLEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGI 166          
BLAST of FC925393 vs. ExPASy Swiss-Prot
Match: PYGL_RAT (Glycogen phosphorylase, liver form OS=Rattus norvegicus GN=Pygl PE=1 SV=5)

HSP 1 Score: 106.301 bits (264), Expect = 1.770e-22
Identity = 53/118 (44.92%), Postives = 72/118 (61.02%), Query Frame = 2
Query:  380 PEQAFFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGL 733
            P   +FA A +VRD L+ +W  T  H+     K+ YYLS+EF  GRTL N + +L +QNA  +A+  LG  +EE+ E E+D            +CFLDSMATL L A+GYG+RY YG+
Sbjct:   49 PRDYYFALAHTVRDHLVGRWIRTQQHYYDKCPKRVYYLSLEFYMGRTLQNTMINLGLQNACDEAIYQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEYGI 166          
BLAST of FC925393 vs. ExPASy Swiss-Prot
Match: PYGL_MOUSE (Glycogen phosphorylase, liver form OS=Mus musculus GN=Pygl PE=1 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 1.770e-22
Identity = 53/118 (44.92%), Postives = 72/118 (61.02%), Query Frame = 2
Query:  380 PEQAFFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGL 733
            P   +FA A +VRD L+ +W  T  H+     K+ YYLS+EF  GRTL N + +L +QNA  +A+  LG  +EE+ E E+D            +CFLDSMATL L A+GYG+RY YG+
Sbjct:   49 PRDYYFALAHTVRDHLVGRWIRTQQHYYDKCPKRVYYLSLEFYMGRTLQNTMINLGLQNACDEAIYQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEYGI 166          
The following BLAST results are available for this feature:
BLAST of FC925393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
PYGM_MOUSE3.567e-2339.01Glycogen phosphorylase, muscle form OS=Mus musculu... [more]
PYGB_PONAB4.658e-2345.76Glycogen phosphorylase, brain form OS=Pongo abelii... [more]
PHS2_DICDI6.084e-2337.88Glycogen phosphorylase 2 OS=Dictyostelium discoide... [more]
PYGM_RABIT7.946e-2338.85Glycogen phosphorylase, muscle form OS=Oryctolagus... [more]
PYGM_MACFA7.946e-2338.85Glycogen phosphorylase, muscle form OS=Macaca fasc... [more]
PYGM_HUMAN7.946e-2338.85Glycogen phosphorylase, muscle form OS=Homo sapien... [more]
PYGB_RAT1.038e-2245.76Glycogen phosphorylase, brain form (Fragment) OS=R... [more]
PYGB_MOUSE1.038e-2245.76Glycogen phosphorylase, brain form OS=Mus musculus... [more]
PYGL_RAT1.770e-2244.92Glycogen phosphorylase, liver form OS=Rattus norve... [more]
PYGL_MOUSE1.770e-2244.92Glycogen phosphorylase, liver form OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YD19FM1 TF Citrus clementina cDNA clone KN0AAP11YD19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925393 ID=FC925393; Name=FC925393; organism=Citrus clementina; type=EST; length=734bp
TTACTCACTCACTCTCATGATATCGTGATCGTCAGTCTCTGATATTTTTT
TTTCCCCCTTTAGAAACTCAATCACTTCAAAGTTCTTGTTCGTTTTCCTC
TTCTTAGCATATTTTTTCTTTCTCGCTCCAATACTTTCTTCATAACAATA
TCTTCTCTCACACTTCATTTACATTTTAAACTGCTCTGTCGCTTCTGAAA
CAAGCAATAATTTGTGGAATCAAATGGCGGATGCGAAAGCAAACGGAAAG
AATGAGGCGGCCAAACTGGCGAAAATTCCTGCGGCTGCGAATCCATTGGC
TAATGAACCATCGGCGATTGCATCAAATATAAGTTACCACGTGCAGTACA
GTCCTCATTTCTCGCCGACTAAGTTCGAGCCGGAGCAAGCTTTCTTTGCC
ACGGCGGAGAGTGTCCGCGATCGTCTTATTCAACAATGGAATGAGACATA
CCACCATTTTAATAAAGTTGATCTGAAGCAAACATACTACCTATCAATGG
AATTTCTTCAAGGAAGGACTTTGACTAATGCAATTGGCAGTTTGGACATT
CAGAATGCATATGCTGATGCTTTAAATAATTTGGGGCATGTCCTTGAGGA
GATAGCTGAACAGGAAAAAGATGCTGCACTAGGAAATGGTGGGCTGGGCA
GGCTAGCTTCATGCTTCTTAGACTCCATGGCAACATTGAATTTGCCTGCC
TGGGGTTATGGTTTGAGATACCGGTATGGGCTGT
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