FC925393

Overview
NameFC925393
Unique NameFC925393
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925393 vs. ExPASy Swiss-Prot
Match: PYGM_RAT (Glycogen phosphorylase, muscle form OS=Rattus norvegicus GN=Pygm PE=2 SV=5)

HSP 1 Score: 105.916 bits (263), Expect = 2.312e-22
Identity = 54/141 (38.30%), Postives = 79/141 (56.03%), Query Frame = 2
Query:  311 SAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGL 733
            S +  N + H+ ++         P   +FA A +VRD L+ +W  T  H+   D K+ YYLS+E   GRTL N + +L ++NA  +A   LG  +EE+ E E+D            +CFLDSMATL L A+GYG+RY +G+
Sbjct:   26 SDLKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVDRWIRTQQHYYAKDPKRIYYLSLELYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGI 166          
BLAST of FC925393 vs. ExPASy Swiss-Prot
Match: PYGL_SHEEP (Glycogen phosphorylase, liver form OS=Ovis aries GN=PYGL PE=2 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 2.312e-22
Identity = 53/118 (44.92%), Postives = 73/118 (61.86%), Query Frame = 2
Query:  380 PEQAFFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGL 733
            P   FFA A +VRD L+ +W  T  ++ +   K+ YYLS+EF  GRTL N + +L +QNA  +A+  LG  +EE+ E E+D            +CFLDSMATL L A+GYG+RY YG+
Sbjct:   49 PRDYFFALAHTVRDHLVGRWIRTQQYYYEKCPKRVYYLSLEFYMGRTLQNTMINLGLQNACDEAIYQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEYGI 166          
BLAST of FC925393 vs. ExPASy Swiss-Prot
Match: PYGL_BOVIN (Glycogen phosphorylase, liver form OS=Bos taurus GN=PYGL PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.312e-22
Identity = 53/118 (44.92%), Postives = 73/118 (61.86%), Query Frame = 2
Query:  380 PEQAFFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGL 733
            P   FFA A +VRD L+ +W  T  ++ +   K+ YYLS+EF  GRTL N + +L +QNA  +A+  LG  +EE+ E E+D            +CFLDSMATL L A+GYG+RY YG+
Sbjct:   49 PRDYFFALAHTVRDHLVGRWIRTQQYYYEKCPKRVYYLSLEFYMGRTLQNTMINLGLQNACDEAIYQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEYGI 166          
BLAST of FC925393 vs. ExPASy Swiss-Prot
Match: PYGM_SHEEP (Glycogen phosphorylase, muscle form OS=Ovis aries GN=PYGM PE=2 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 3.019e-22
Identity = 54/139 (38.85%), Postives = 80/139 (57.55%), Query Frame = 2
Query:  317 IASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGL 733
            +  N + H+ ++         P   +FA A +VRD L+ +W  T  H+ + D K+ YYLS+EF  GRTL N + +L ++NA  +A   LG  +EE+ E E+D            +CFLDSMATL L A+GYG+RY +G+
Sbjct:   28 LKKNFNRHLHFTLVKDRNVATPRDYYFALAYTVRDHLVGRWIRTQQHYYEKDPKRIYYLSLEFYIGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGI 166          
BLAST of FC925393 vs. ExPASy Swiss-Prot
Match: PYGM_BOVIN (Glycogen phosphorylase, muscle form OS=Bos taurus GN=PYGM PE=1 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 3.019e-22
Identity = 54/139 (38.85%), Postives = 80/139 (57.55%), Query Frame = 2
Query:  317 IASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGL 733
            +  N + H+ ++         P   +FA A +VRD L+ +W  T  H+ + D K+ YYLS+EF  GRTL N + +L ++NA  +A   LG  +EE+ E E+D            +CFLDSMATL L A+GYG+RY +G+
Sbjct:   28 LKKNFNRHLHFTLVKDRNVATPRDYYFALAYTVRDHLVGRWIRTQQHYYEKDPKRIYYLSLEFYIGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGI 166          
BLAST of FC925393 vs. ExPASy Swiss-Prot
Match: PYGL_HUMAN (Glycogen phosphorylase, liver form OS=Homo sapiens GN=PYGL PE=1 SV=4)

HSP 1 Score: 104.375 bits (259), Expect = 6.726e-22
Identity = 52/114 (45.61%), Postives = 71/114 (62.28%), Query Frame = 2
Query:  392 FFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGL 733
            +FA A +VRD L+ +W  T  H+     K+ YYLS+EF  GRTL N + +L +QNA  +A+  LG  +EE+ E E+D            +CFLDSMATL L A+GYG+RY YG+
Sbjct:   53 YFALAHTVRDHLVGRWIRTQQHYYDKCPKRVYYLSLEFYMGRTLQNTMINLGLQNACDEAIYQLGLDIEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEYGI 166          
BLAST of FC925393 vs. ExPASy Swiss-Prot
Match: PYG_DROME (Glycogen phosphorylase OS=Drosophila melanogaster GN=GlyP PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 8.785e-22
Identity = 51/139 (36.69%), Postives = 79/139 (56.83%), Query Frame = 2
Query:  317 IASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGL 733
            +  N + H+ Y+             +FA A +V+D ++ +W  T  H+ + D K+ YYLS+E+  GR+LTN + +L IQ+   +A+  LG  +E + E E+D            +CFLDSMATL L A+GYG+RY YG+
Sbjct:   28 VKKNFNRHLHYTLVKDRNVSTLRDYYFALANTVKDNMVGRWIRTQQHYYEKDPKRVYYLSLEYYMGRSLTNTMINLGIQSECEEAMYQLGLDIENLEEMEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEYGI 166          
BLAST of FC925393 vs. ExPASy Swiss-Prot
Match: PYGB_SHEEP (Glycogen phosphorylase, brain form OS=Ovis aries GN=PYGB PE=2 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 3.338e-21
Identity = 51/114 (44.74%), Postives = 71/114 (62.28%), Query Frame = 2
Query:  392 FFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGL 733
            + A A +VRD L+ +W  T   + + D K+ YYLS+EF  GRTL N + +L +QNA  +A+  LG  LEE+ E E+D            +CFLDSMATL L A+GYG+RY +G+
Sbjct:   53 YLALAHTVRDHLVGRWIRTQQRYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQNACDEAIYQLGLDLEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGI 166          
BLAST of FC925393 vs. ExPASy Swiss-Prot
Match: PYGB_BOVIN (Glycogen phosphorylase, brain form OS=Bos taurus GN=PYGB PE=2 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 3.338e-21
Identity = 51/114 (44.74%), Postives = 71/114 (62.28%), Query Frame = 2
Query:  392 FFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGL 733
            + A A +VRD L+ +W  T   + + D K+ YYLS+EF  GRTL N + +L +QNA  +A+  LG  LEE+ E E+D            +CFLDSMATL L A+GYG+RY +G+
Sbjct:   53 YLALAHTVRDHLVGRWIRTQQRYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQNACDEAIYQLGLDLEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGI 166          
BLAST of FC925393 vs. ExPASy Swiss-Prot
Match: PHSG_SHIFL (Glycogen phosphorylase OS=Shigella flexneri GN=glgP PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.713e-21
Identity = 55/140 (39.29%), Postives = 79/140 (56.43%), Query Frame = 2
Query:  314 AIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGL 733
            A+  +I+Y + ++    P      +   AT  +VRDRL+++W  +       + +Q YYLSMEFL GRTL+NA+ SL I      AL  +G  LEE+ ++E D            +CFLDS+ATL LP  GYG+RY YG+
Sbjct:   16 ALKHSIAYKLMFTIGKDPVVANKHEWLNATLFAVRDRLVERWLRSNRAQLSQETRQVYYLSMEFLIGRTLSNAMLSLGIYEDVQGALEAMGLNLEELIDEENDPGLGNGGLGRLAACFLDSLATLGLPGRGYGIRYDYGM 155          
The following BLAST results are available for this feature:
BLAST of FC925393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
PYGM_RAT2.312e-2238.30Glycogen phosphorylase, muscle form OS=Rattus norv... [more]
PYGL_SHEEP2.312e-2244.92Glycogen phosphorylase, liver form OS=Ovis aries G... [more]
PYGL_BOVIN2.312e-2244.92Glycogen phosphorylase, liver form OS=Bos taurus G... [more]
PYGM_SHEEP3.019e-2238.85Glycogen phosphorylase, muscle form OS=Ovis aries ... [more]
PYGM_BOVIN3.019e-2238.85Glycogen phosphorylase, muscle form OS=Bos taurus ... [more]
PYGL_HUMAN6.726e-2245.61Glycogen phosphorylase, liver form OS=Homo sapiens... [more]
PYG_DROME8.785e-2236.69Glycogen phosphorylase OS=Drosophila melanogaster ... [more]
PYGB_SHEEP3.338e-2144.74Glycogen phosphorylase, brain form OS=Ovis aries G... [more]
PYGB_BOVIN3.338e-2144.74Glycogen phosphorylase, brain form OS=Bos taurus G... [more]
PHSG_SHIFL9.713e-2139.29Glycogen phosphorylase OS=Shigella flexneri GN=glg... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YD19FM1 TF Citrus clementina cDNA clone KN0AAP11YD19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925393 ID=FC925393; Name=FC925393; organism=Citrus clementina; type=EST; length=734bp
TTACTCACTCACTCTCATGATATCGTGATCGTCAGTCTCTGATATTTTTT
TTTCCCCCTTTAGAAACTCAATCACTTCAAAGTTCTTGTTCGTTTTCCTC
TTCTTAGCATATTTTTTCTTTCTCGCTCCAATACTTTCTTCATAACAATA
TCTTCTCTCACACTTCATTTACATTTTAAACTGCTCTGTCGCTTCTGAAA
CAAGCAATAATTTGTGGAATCAAATGGCGGATGCGAAAGCAAACGGAAAG
AATGAGGCGGCCAAACTGGCGAAAATTCCTGCGGCTGCGAATCCATTGGC
TAATGAACCATCGGCGATTGCATCAAATATAAGTTACCACGTGCAGTACA
GTCCTCATTTCTCGCCGACTAAGTTCGAGCCGGAGCAAGCTTTCTTTGCC
ACGGCGGAGAGTGTCCGCGATCGTCTTATTCAACAATGGAATGAGACATA
CCACCATTTTAATAAAGTTGATCTGAAGCAAACATACTACCTATCAATGG
AATTTCTTCAAGGAAGGACTTTGACTAATGCAATTGGCAGTTTGGACATT
CAGAATGCATATGCTGATGCTTTAAATAATTTGGGGCATGTCCTTGAGGA
GATAGCTGAACAGGAAAAAGATGCTGCACTAGGAAATGGTGGGCTGGGCA
GGCTAGCTTCATGCTTCTTAGACTCCATGGCAACATTGAATTTGCCTGCC
TGGGGTTATGGTTTGAGATACCGGTATGGGCTGT
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