FC925393

Overview
NameFC925393
Unique NameFC925393
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925393 vs. ExPASy Swiss-Prot
Match: PHSG_ECOLI (Glycogen phosphorylase OS=Escherichia coli (strain K12) GN=glgP PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.713e-21
Identity = 55/140 (39.29%), Postives = 79/140 (56.43%), Query Frame = 2
Query:  314 AIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGL 733
            A+  +I+Y + ++    P      +   AT  +VRDRL+++W  +       + +Q YYLSMEFL GRTL+NA+ SL I      AL  +G  LEE+ ++E D            +CFLDS+ATL LP  GYG+RY YG+
Sbjct:   16 ALKHSIAYKLMFTIGKDPVVANKHEWLNATLFAVRDRLVERWLRSNRAQLSQETRQVYYLSMEFLIGRTLSNAMLSLGIYEDVQGALEAMGLNLEELIDEENDPGLGNGGLGRLAACFLDSLATLGLPGRGYGIRYDYGM 155          
BLAST of FC925393 vs. ExPASy Swiss-Prot
Match: PHSG_YEAST (Glycogen phosphorylase OS=Saccharomyces cerevisiae GN=GPH1 PE=1 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 8.222e-20
Identity = 51/128 (39.84%), Postives = 71/128 (55.47%), Query Frame = 2
Query:  389 AFFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNA-------------YADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGL 733
            A+ A + S+RD L+  WN+T   F   D K+ YYLS+EFL GR L NA+ ++ I++                 AL+  G  LE++ +QE D            +CF+DSMAT  +PAWGYGLRY YG+
Sbjct:   91 AYEAASMSIRDNLVIDWNKTQQKFTTRDPKRVYYLSLEFLMGRALDNALINMKIEDPEDPAASKGKPREMIKGALDEGGFKLEDVLDQEPDAGLGNGGLGRLAACFVDSMATEGIPAWGYGLRYEYGI 218          
BLAST of FC925393 vs. ExPASy Swiss-Prot
Match: PHSG_CHLPN (Glycogen phosphorylase OS=Chlamydia pneumoniae GN=glgP PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.392e-19
Identity = 49/124 (39.52%), Postives = 72/124 (58.06%), Query Frame = 2
Query:  362 SPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGL 733
            SP    P   F A A++V + L + W +T + + K D+K+ YYLSMEFL GR+L + + +L I +    AL  L +  + + E E D            +C+LDSMATL +PA+GYG+RY YG+
Sbjct:   32 SPESASPRDIFTAVAKTVMEWLAKGWLKTQNGYYKNDVKRVYYLSMEFLLGRSLKSNLLNLGILDLVRKALKTLNYDFDHLVEMESDAGLGNGGLGRLAACYLDSMATLAVPAYGYGIRYDYGI 155          
BLAST of FC925393 vs. ExPASy Swiss-Prot
Match: PHSG_HAEIN (Glycogen phosphorylase OS=Haemophilus influenzae GN=glgP PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.330e-19
Identity = 54/140 (38.57%), Postives = 75/140 (53.57%), Query Frame = 2
Query:  314 AIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGL 733
            AI  +I Y + +    SP +        AT  +VRD + + W  T       D ++ YYLSMEFL GRTL+NA+ +  I     +AL+ L   LEE+ E+E D            +CF+DS+ATL LP  GYG+RY YG+
Sbjct:   21 AIKKSIVYKLIFLIGRSPREASQRDWLNATLHAVRDLVTEGWITTARQTRAEDSRRVYYLSMEFLIGRTLSNAMIAEGIYGLAQEALSELNVDLEEVLEKEVDPGLGNGGLGRLAACFMDSIATLGLPGMGYGIRYEYGM 160          
BLAST of FC925393 vs. ExPASy Swiss-Prot
Match: PHSG_CHLMU (Glycogen phosphorylase OS=Chlamydia muridarum GN=glgP PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.091e-19
Identity = 46/124 (37.10%), Postives = 74/124 (59.68%), Query Frame = 2
Query:  362 SPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGL 733
            +P        F A A++V + + + W +T   +   D+K+ YY+SMEFL GR+L + + +L + +   +AL++LG+  +++ E E D            +CFLDSMATL +PA+GYGLRY YG+
Sbjct:   28 TPQSASTRDIFTAVAKTVSEWMAKGWLKTQSSYYDNDVKRVYYISMEFLLGRSLKSNLLNLGLLDLVNEALSDLGYDFDQLVEMEHDAGLGNGGLGRLAACFLDSMATLGIPAYGYGLRYDYGI 151          
BLAST of FC925393 vs. ExPASy Swiss-Prot
Match: PHSG_CHLTR (Glycogen phosphorylase OS=Chlamydia trachomatis GN=glgP PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.645e-18
Identity = 46/124 (37.10%), Postives = 73/124 (58.87%), Query Frame = 2
Query:  362 SPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGL 733
            +P        F A A++V + + + W +T   +   D+K+ YY+SMEFL GR+L + + +L + +   +AL +LG+  +++ E E D            +CFLDSMATL +PA+GYGLRY YG+
Sbjct:   28 TPQSASTRDIFTAVAKTVLEWMAKGWLKTQSSYYDNDVKRVYYISMEFLLGRSLKSNLLNLGLLDLVKEALFDLGYDFDQLVEMEHDAGLGNGGLGRLAACFLDSMATLEIPAYGYGLRYDYGI 151          
BLAST of FC925393 vs. ExPASy Swiss-Prot
Match: PHSG_PASMU (Glycogen phosphorylase OS=Pasteurella multocida GN=glgP PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.313e-17
Identity = 50/140 (35.71%), Postives = 76/140 (54.29%), Query Frame = 2
Query:  314 AIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGL 733
            ++  +I Y + +S   SP +        AT  +VRD + + W  T       + ++ YYLSMEFL GRTL+NA+ +  + +    AL+ L   LE++ E+E D            +CF+DS+ATL LP  GYG+RY YG+
Sbjct:   21 SLKKSIVYKLIFSIGRSPKEASQRDWLNATLYAVRDFVTEGWITTARQSRSEETRRVYYLSMEFLIGRTLSNAMLAEGVYDVAKQALSELNVNLEDVLEKEVDPGLGNGGLGRLAACFMDSIATLALPGVGYGIRYEYGM 160          
BLAST of FC925393 vs. ExPASy Swiss-Prot
Match: PHSG_SYNY3 (Glycogen phosphorylase OS=Synechocystis sp. (strain PCC 6803) GN=glgP PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.774e-14
Identity = 46/140 (32.86%), Postives = 74/140 (52.86%), Query Frame = 2
Query:  314 AIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGL 733
            A+A N+ Y     P  + TK      + A A ++RDRL+Q+W  T+  +   D +   YLS E+L G  L N + +L +      A+   G  L+E+ + E++            +CF+DS+ATL +PA GYG+RY +G+
Sbjct:   32 ALADNLFYLQGKFPAIA-TK---NDCYMALAYTIRDRLLQRWLNTFQTYLNCDNRVVCYLSAEYLLGPHLGNNLINLGLWEPVQQAVEESGLSLDELIDIEEEPGLGNGGLGRLAACFMDSLATLEIPAIGYGIRYEFGI 167          
BLAST of FC925393 vs. ExPASy Swiss-Prot
Match: PHSG_BACSU (Glycogen phosphorylase OS=Bacillus subtilis GN=glgP PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.952e-14
Identity = 42/107 (39.25%), Postives = 59/107 (55.14%), Query Frame = 2
Query:  413 VRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGL 733
            VR+ +   W ET         KQTYYLS+EFL G+ L   + +L +++     L  +G  LEEI + E D            +CFLDS+A+LNLP  G G+RY++GL
Sbjct:   40 VREYISADWIETNEKSRSNSGKQTYYLSIEFLLGQLLEQNLMNLGVRDVVEAGLKEIGINLEEILQIENDAGLGNGGLGRLAACFLDSLASLNLPGHGMGIRYKHGL 146          
The following BLAST results are available for this feature:
BLAST of FC925393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
PHSG_ECOLI9.713e-2139.29Glycogen phosphorylase OS=Escherichia coli (strain... [more]
PHSG_YEAST8.222e-2039.84Glycogen phosphorylase OS=Saccharomyces cerevisiae... [more]
PHSG_CHLPN2.392e-1939.52Glycogen phosphorylase OS=Chlamydia pneumoniae GN=... [more]
PHSG_HAEIN5.330e-1938.57Glycogen phosphorylase OS=Haemophilus influenzae G... [more]
PHSG_CHLMU9.091e-1937.10Glycogen phosphorylase OS=Chlamydia muridarum GN=g... [more]
PHSG_CHLTR2.645e-1837.10Glycogen phosphorylase OS=Chlamydia trachomatis GN... [more]
PHSG_PASMU1.313e-1735.71Glycogen phosphorylase OS=Pasteurella multocida GN... [more]
PHSG_SYNY31.774e-1432.86Glycogen phosphorylase OS=Synechocystis sp. (strai... [more]
PHSG_BACSU3.952e-1439.25Glycogen phosphorylase OS=Bacillus subtilis GN=glg... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YD19FM1 TF Citrus clementina cDNA clone KN0AAP11YD19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925393 ID=FC925393; Name=FC925393; organism=Citrus clementina; type=EST; length=734bp
TTACTCACTCACTCTCATGATATCGTGATCGTCAGTCTCTGATATTTTTT
TTTCCCCCTTTAGAAACTCAATCACTTCAAAGTTCTTGTTCGTTTTCCTC
TTCTTAGCATATTTTTTCTTTCTCGCTCCAATACTTTCTTCATAACAATA
TCTTCTCTCACACTTCATTTACATTTTAAACTGCTCTGTCGCTTCTGAAA
CAAGCAATAATTTGTGGAATCAAATGGCGGATGCGAAAGCAAACGGAAAG
AATGAGGCGGCCAAACTGGCGAAAATTCCTGCGGCTGCGAATCCATTGGC
TAATGAACCATCGGCGATTGCATCAAATATAAGTTACCACGTGCAGTACA
GTCCTCATTTCTCGCCGACTAAGTTCGAGCCGGAGCAAGCTTTCTTTGCC
ACGGCGGAGAGTGTCCGCGATCGTCTTATTCAACAATGGAATGAGACATA
CCACCATTTTAATAAAGTTGATCTGAAGCAAACATACTACCTATCAATGG
AATTTCTTCAAGGAAGGACTTTGACTAATGCAATTGGCAGTTTGGACATT
CAGAATGCATATGCTGATGCTTTAAATAATTTGGGGCATGTCCTTGAGGA
GATAGCTGAACAGGAAAAAGATGCTGCACTAGGAAATGGTGGGCTGGGCA
GGCTAGCTTCATGCTTCTTAGACTCCATGGCAACATTGAATTTGCCTGCC
TGGGGTTATGGTTTGAGATACCGGTATGGGCTGT
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