FC925394

Overview
NameFC925394
Unique NameFC925394
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length648
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925394 vs. ExPASy Swiss-Prot
Match: SAP2_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 2 OS=Oryza sativa subsp. japonica GN=SAP2 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.663e-20
Identity = 51/155 (32.90%), Postives = 73/155 (47.10%), Query Frame = 1
Query:  184 LKMAEEHRCQAPRL-CVNNCGFFGSPTTQNLCSKCFRDLQLKAQQSSSAKHALNQTLIXXXXXXXXXXVDLSLRERPATDXXXXXXXXXXXXXXXXXXQSTAANRCITCRRRVGLTGFKCKCGSVFCGTHRYPEQHACSFDFKKMGKELIAKANP 645
            ++   E + + P L C N CGFFGS  T+ LCSKC+R   +    + SA     +             VD      P                      +   +RC  C R VGL GF+C+CG+VFCG HRY ++H C +D++  G++ IA+ANP
Sbjct:    1 MEQGSERQDERPPLPCANGCGFFGSADTRGLCSKCYRQTVMSQASAPSAAAQSAEHDQVVLPAPEGVPVDEGAMPPPPPRHG-----------------AKTKSRCAACGRSVGLMGFECRCGAVFCGAHRYSDRHDCGYDYRGAGRDAIARANP 138          
BLAST of FC925394 vs. ExPASy Swiss-Prot
Match: SAP14_ORYSJ (Zinc finger AN1 domain-containing stress-associated protein 14 OS=Oryza sativa subsp. japonica GN=SAP14 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.578e-19
Identity = 37/53 (69.81%), Postives = 43/53 (81.13%), Query Frame = 1
Query:  487 ANRCITCRRRVGLTGFKCKCGSVFCGTHRYPEQHACSFDFKKMGKELIAKANP 645
            ANRC TCRR+VGLTGFKC+CG  FCG HRY ++H C FD+K  G+ELIAK NP
Sbjct:  174 ANRCATCRRKVGLTGFKCRCGGTFCGGHRYADEHGCGFDYKSSGRELIAKQNP 226          
BLAST of FC925394 vs. ExPASy Swiss-Prot
Match: SAP10_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 10 OS=Oryza sativa subsp. japonica GN=SAP10 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.171e-16
Identity = 48/141 (34.04%), Postives = 62/141 (43.97%), Query Frame = 1
Query:  223 LCVNNCGFFGSPTTQNLCSKCFRDLQLKAQQSSSAKHALNQTLIXXXXXXXXXXVDLSLRERPATDXXXXXXXXXXXXXXXXXXQSTAANRCITCRRRVGLTGFKCKCGSVFCGTHRYPEQHACSFDFKKMGKELIAKANP 645
            +C   CGFFGS  T  LCSKC++      QQ    +H +                DLS                           + A NRC  CR++VGL GF C+CG +FCG       HAC+FD+K  G+E IA+ NP
Sbjct:   17 MCAAGCGFFGSAATDGLCSKCYK------QQQPQPRHLIGTAAGDSDKTSLKVVADLSTL---VIKDNSGVGGEGTTVMAPPATVTKAKNRCKACRKKVGLLGFPCRCGGMFCGA------HACAFDYKAAGREAIARHNP 142          
BLAST of FC925394 vs. ExPASy Swiss-Prot
Match: SAP15_ORYSJ (Zinc finger AN1 domain-containing stress-associated protein 15 OS=Oryza sativa subsp. japonica GN=SAP15 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.691e-15
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 1
Query:  490 NRCITCRRRVGLTGFKCKCGSVFCGTHRYPEQHACSFDFKKMGKELIAKANP 645
            NRC  CR+RVGLTGF+C+CG +FC  HR+ E H CSFD+K  G+E IA+ANP
Sbjct:  113 NRCNVCRKRVGLTGFRCRCGELFCPRHRHSETHECSFDYKTAGREEIARANP 164          
BLAST of FC925394 vs. ExPASy Swiss-Prot
Match: SAP10_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 10 OS=Arabidopsis thaliana GN=SAP10 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.208e-15
Identity = 45/140 (32.14%), Postives = 63/140 (45.00%), Query Frame = 1
Query:  226 CVNNCGFFGSPTTQNLCSKCFRDLQLKAQQSSSAKHALNQTLIXXXXXXXXXXVDLSLRERPATDXXXXXXXXXXXXXXXXXXQSTAANRCITCRRRVGLTGFKCKCGSVFCGTHRYPEQHACSFDFKKMGKELIAKANP 645
            C   CG +G+    NLCS C++   L   Q S A                       LR  P T+                  +     RC  C+R+VG+ GFKC+CG +FCG+HRYPE+H+C FD+K+ G+  +A   P
Sbjct:   10 CEGGCGLYGTRVNNNLCSLCYKKSVL---QHSPA-----------------------LRFEPETEQSQCCPPTNSPAVEE---EPVKKRRCGICKRKVGMLGFKCRCGHMFCGSHRYPEEHSCPFDYKQSGRLALATQLP 120          
BLAST of FC925394 vs. ExPASy Swiss-Prot
Match: ZFAN6_RAT (AN1-type zinc finger protein 6 OS=Rattus norvegicus GN=Zfand6 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.582e-13
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = 1
Query:  490 NRCITCRRRVGLTGFKCKCGSVFCGTHRYPEQHACSFDFKKMGKELIAKANP 645
            NRC  CR++VGLTGF+C+CG+V+CG HRY + H CS+++K    E I K NP
Sbjct:  162 NRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENP 213          
BLAST of FC925394 vs. ExPASy Swiss-Prot
Match: ZFAN6_PONAB (AN1-type zinc finger protein 6 OS=Pongo abelii GN=ZFAND6 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.582e-13
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = 1
Query:  490 NRCITCRRRVGLTGFKCKCGSVFCGTHRYPEQHACSFDFKKMGKELIAKANP 645
            NRC  CR++VGLTGF+C+CG+V+CG HRY + H CS+++K    E I K NP
Sbjct:  147 NRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENP 198          
BLAST of FC925394 vs. ExPASy Swiss-Prot
Match: ZFAN6_MOUSE (AN1-type zinc finger protein 6 OS=Mus musculus GN=Zfand6 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.582e-13
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = 1
Query:  490 NRCITCRRRVGLTGFKCKCGSVFCGTHRYPEQHACSFDFKKMGKELIAKANP 645
            NRC  CR++VGLTGF+C+CG+V+CG HRY + H CS+++K    E I K NP
Sbjct:  162 NRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENP 213          
BLAST of FC925394 vs. ExPASy Swiss-Prot
Match: ZFAN6_HUMAN (AN1-type zinc finger protein 6 OS=Homo sapiens GN=ZFAND6 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.582e-13
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = 1
Query:  490 NRCITCRRRVGLTGFKCKCGSVFCGTHRYPEQHACSFDFKKMGKELIAKANP 645
            NRC  CR++VGLTGF+C+CG+V+CG HRY + H CS+++K    E I K NP
Sbjct:  147 NRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENP 198          
BLAST of FC925394 vs. ExPASy Swiss-Prot
Match: ZFAN6_BOVIN (AN1-type zinc finger protein 6 OS=Bos taurus GN=ZFAND6 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.582e-13
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = 1
Query:  490 NRCITCRRRVGLTGFKCKCGSVFCGTHRYPEQHACSFDFKKMGKELIAKANP 645
            NRC  CR++VGLTGF+C+CG+V+CG HRY + H CS+++K    E I K NP
Sbjct:  147 NRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENP 198          
The following BLAST results are available for this feature:
BLAST of FC925394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
SAP2_ORYSJ8.663e-2032.90Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP14_ORYSJ9.578e-1969.81Zinc finger AN1 domain-containing stress-associate... [more]
SAP10_ORYSJ1.171e-1634.04Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP15_ORYSJ1.691e-1563.46Zinc finger AN1 domain-containing stress-associate... [more]
SAP10_ARATH2.208e-1532.14Zinc finger A20 and AN1 domain-containing stress-a... [more]
ZFAN6_RAT1.582e-1355.77AN1-type zinc finger protein 6 OS=Rattus norvegicu... [more]
ZFAN6_PONAB1.582e-1355.77AN1-type zinc finger protein 6 OS=Pongo abelii GN=... [more]
ZFAN6_MOUSE1.582e-1355.77AN1-type zinc finger protein 6 OS=Mus musculus GN=... [more]
ZFAN6_HUMAN1.582e-1355.77AN1-type zinc finger protein 6 OS=Homo sapiens GN=... [more]
ZFAN6_BOVIN1.582e-1355.77AN1-type zinc finger protein 6 OS=Bos taurus GN=ZF... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP8YI20FM1 TF Citrus clementina cDNA clone KN0AAP8YI20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925394 ID=FC925394; Name=FC925394; organism=Citrus clementina; type=EST; length=648bp
TTACAGGTAACGTTAAATTTTTGTATTAGTTTCTCATAAATAGTTTTTTT
TTTTTTTTGGGTTAATCCATTAACTTGATTTCAAATAGGAATAATATGGA
TAGAATCGAAGTCTTATAAATTTTTATATTAGCTTGCAAGATTTCAATCA
ACTGATTTGGAATGGAAAATTTTGCTGTAAAGGTTGAAGATGGCGGAAGA
GCACAGATGTCAAGCACCCCGTTTGTGCGTGAACAACTGCGGATTTTTCG
GGAGCCCAACAACTCAAAATCTCTGCTCCAAATGTTTTCGCGATCTTCAG
TTGAAAGCACAACAATCTTCCTCGGCCAAACACGCCCTTAACCAAACCCT
GATTTCTTCGTCGTCGTCGTCGCCGTCGCCGTCGGTTGATTTGTCTCTGC
GCGAGAGACCGGCGACGGATGTGGAGGTAGCGGCAGAGGCGGAGAAGCCG
CCGGCTGAAGTGGCCGCTCCGGTGCAGTCGACGGCGGCGAACAGGTGCAT
AACTTGCAGGAGGCGCGTGGGGCTCACGGGGTTCAAGTGCAAGTGCGGGT
CGGTGTTCTGCGGGACCCACAGGTACCCGGAGCAGCACGCGTGCTCGTTC
GATTTCAAAAAGATGGGCAAAGAACTGATTGCGAAGGCAAATCCCTGT
back to top