FC925425

Overview
NameFC925425
Unique NameFC925425
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PRS4_YEAST (26S protease regulatory subunit 4 homolog OS=Saccharomyces cerevisiae GN=RPT2 PE=1 SV=3)

HSP 1 Score: 192.586 bits (488), Expect = 1.229e-48
Identity = 94/174 (54.02%), Postives = 130/174 (74.71%), Query Frame = 1
Query:   64 PSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            P   V L + +  +  +L     P+V++MK++K P  +Y  IGGL+ QI+EIKE +ELP+  PEL+E +GI  PKGV+LYG PGTGKTLLA+AVA+ T  TF+R+ GSEL+QKY+G+G R+ R++F +A E+APSI+F+DEID+ G+ R  S S  G+ E+QRTMLELLNQL+G
Sbjct:  143 PGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNS-GGEREIQRTMLELLNQLDG 315          
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PRS10_SPETR (26S protease regulatory subunit S10B OS=Spermophilus tridecemlineatus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.229e-48
Identity = 99/190 (52.11%), Postives = 128/190 (67.37%), Query Frame = 1
Query:   16 KYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            +YVV            P TRVAL   +  +   LP +V PLV  M  E   + +Y  IGGL +QI+E++EVIELP+  PELF+ +GI  PKG LLYGPPGTGKTLLARAVA   DC F++V  S +V KYIGE +R++RE+F  AR+H P IIFMDEID+ G  R   G+ + D E+QRT++ELLNQ++G
Sbjct:   78 RYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGT-SADREIQRTLMELLNQMDG 266          
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PRS10_MOUSE (26S protease regulatory subunit S10B OS=Mus musculus GN=Psmc6 PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.229e-48
Identity = 99/190 (52.11%), Postives = 128/190 (67.37%), Query Frame = 1
Query:   16 KYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            +YVV            P TRVAL   +  +   LP +V PLV  M  E   + +Y  IGGL +QI+E++EVIELP+  PELF+ +GI  PKG LLYGPPGTGKTLLARAVA   DC F++V  S +V KYIGE +R++RE+F  AR+H P IIFMDEID+ G  R   G+ + D E+QRT++ELLNQ++G
Sbjct:   78 RYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGT-SADREIQRTLMELLNQMDG 266          
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PRS10_HUMAN (26S protease regulatory subunit S10B OS=Homo sapiens GN=PSMC6 PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.229e-48
Identity = 99/190 (52.11%), Postives = 128/190 (67.37%), Query Frame = 1
Query:   16 KYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            +YVV            P TRVAL   +  +   LP +V PLV  M  E   + +Y  IGGL +QI+E++EVIELP+  PELF+ +GI  PKG LLYGPPGTGKTLLARAVA   DC F++V  S +V KYIGE +R++RE+F  AR+H P IIFMDEID+ G  R   G+ + D E+QRT++ELLNQ++G
Sbjct:   78 RYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGT-SADREIQRTLMELLNQMDG 266          
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PRS10_BOVIN (26S protease regulatory subunit S10B OS=Bos taurus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.229e-48
Identity = 99/190 (52.11%), Postives = 128/190 (67.37%), Query Frame = 1
Query:   16 KYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            +YVV            P TRVAL   +  +   LP +V PLV  M  E   + +Y  IGGL +QI+E++EVIELP+  PELF+ +GI  PKG LLYGPPGTGKTLLARAVA   DC F++V  S +V KYIGE +R++RE+F  AR+H P IIFMDEID+ G  R   G+ + D E+QRT++ELLNQ++G
Sbjct:   78 RYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGT-SADREIQRTLMELLNQMDG 266          
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PSMR_SULIY (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=pan PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.099e-48
Identity = 91/174 (52.30%), Postives = 129/174 (74.14%), Query Frame = 1
Query:   64 PSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            P   VAL      +  +LP K  P+V  M++ + P+ TY  IGGL++QIKE++EV+ELP+K PE+F  +G+  PKGVLLYGPPGTGKT+LA+AVA  ++  FI V  SE  QK++GEG+R+VRELF MA+  APSIIF+DEID+ G+ R+  G+ +G+ E+QRT+++LL +L+G
Sbjct:   95 PGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGT-SGEREIQRTLMQLLAELDG 267          
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PSMR_SULIN (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=pan PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.099e-48
Identity = 91/174 (52.30%), Postives = 129/174 (74.14%), Query Frame = 1
Query:   64 PSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            P   VAL      +  +LP K  P+V  M++ + P+ TY  IGGL++QIKE++EV+ELP+K PE+F  +G+  PKGVLLYGPPGTGKT+LA+AVA  ++  FI V  SE  QK++GEG+R+VRELF MA+  APSIIF+DEID+ G+ R+  G+ +G+ E+QRT+++LL +L+G
Sbjct:   95 PGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGT-SGEREIQRTLMQLLAELDG 267          
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PSMR_SULIM (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=pan PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.099e-48
Identity = 91/174 (52.30%), Postives = 129/174 (74.14%), Query Frame = 1
Query:   64 PSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            P   VAL      +  +LP K  P+V  M++ + P+ TY  IGGL++QIKE++EV+ELP+K PE+F  +G+  PKGVLLYGPPGTGKT+LA+AVA  ++  FI V  SE  QK++GEG+R+VRELF MA+  APSIIF+DEID+ G+ R+  G+ +G+ E+QRT+++LL +L+G
Sbjct:   95 PGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGT-SGEREIQRTLMQLLAELDG 267          
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PSMR_SULIL (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=pan PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.099e-48
Identity = 91/174 (52.30%), Postives = 129/174 (74.14%), Query Frame = 1
Query:   64 PSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            P   VAL      +  +LP K  P+V  M++ + P+ TY  IGGL++QIKE++EV+ELP+K PE+F  +G+  PKGVLLYGPPGTGKT+LA+AVA  ++  FI V  SE  QK++GEG+R+VRELF MA+  APSIIF+DEID+ G+ R+  G+ +G+ E+QRT+++LL +L+G
Sbjct:   95 PGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGT-SGEREIQRTLMQLLAELDG 267          
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PSMR_SULIK (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=pan PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.099e-48
Identity = 91/174 (52.30%), Postives = 129/174 (74.14%), Query Frame = 1
Query:   64 PSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            P   VAL      +  +LP K  P+V  M++ + P+ TY  IGGL++QIKE++EV+ELP+K PE+F  +G+  PKGVLLYGPPGTGKT+LA+AVA  ++  FI V  SE  QK++GEG+R+VRELF MA+  APSIIF+DEID+ G+ R+  G+ +G+ E+QRT+++LL +L+G
Sbjct:   95 PGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGT-SGEREIQRTLMQLLAELDG 267          
The following BLAST results are available for this feature:
BLAST of FC925425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
PRS4_YEAST1.229e-4854.0226S protease regulatory subunit 4 homolog OS=Sacch... [more]
PRS10_SPETR1.229e-4852.1126S protease regulatory subunit S10B OS=Spermophil... [more]
PRS10_MOUSE1.229e-4852.1126S protease regulatory subunit S10B OS=Mus muscul... [more]
PRS10_HUMAN1.229e-4852.1126S protease regulatory subunit S10B OS=Homo sapie... [more]
PRS10_BOVIN1.229e-4852.1126S protease regulatory subunit S10B OS=Bos taurus... [more]
PSMR_SULIY6.099e-4852.30Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIN6.099e-4852.30Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIM6.099e-4852.30Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIL6.099e-4852.30Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIK6.099e-4852.30Proteasome-activating nucleotidase OS=Sulfolobus i... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YE07FM1 TF Citrus clementina cDNA clone KN0AAP11YE07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925425 ID=FC925425; Name=FC925425; organism=Citrus clementina; type=EST; length=587bp
GTTCATCCTGATTTTAAATATGTTGTTGATATTGATAAAAGTATTGATAT
AACCAAGATCACTCCGTCAACAAGAGTTGCACTTCGTAATGACAGCTATG
TTCTTCATTTGATCCTGCCAAGCAAAGTATATCCCCTGGTCAACCTTATG
AAGGTTGAAAAGGTCCCTGATTCTACATATGACATGATTGGTGGCCTTGA
TCAGCAAATTAAGGAGATCAAGGAGGTCATTGAGCTTCCTATCAAACCTC
CCGAATTGTTCGAGTCTCTTGGAATAGCTCAACCCAAGGGTGTATTGCTA
TATGGACCACCTGGTACGGGCAAAACGCTGTTGGCTAGAGCTGTGGCTCA
TCATACTGATTGTACTTTCATCAGGGTTTCAGGTTCTGAATTAGTCCAGA
AATACATTGGAGAAGGCTCCAGAATGGTTAGAGAACTTTTTGTTATGGCA
AGGGAACATGCTCCGTCTATCATTTTTATGGATGAAATTGACAGTACCGG
ATCCGCCCGAATGCAATCTGGCAGCCGAAATGGTGACAGTGAGGTGCAGA
GGACTATGCTGGAGCTGCTCAACCAGCTTGAAGGATT
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