FC925425

Overview
NameFC925425
Unique NameFC925425
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PS6AB_ARATH (26S protease regulatory subunit 6A homolog B OS=Arabidopsis thaliana GN=RPT5B PE=1 SV=3)

HSP 1 Score: 181.03 bits (458), Expect = 3.700e-45
Identity = 92/174 (52.87%), Postives = 127/174 (72.99%), Query Frame = 1
Query:   64 PSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            P   V +  DSY++   LPS+    V  M+V++ P   Y+ IGGL++QI+E+ E I LP+   E FE LGI  PKGVLLYGPPGTGKTL+ARA A  T+ TF++++G +LVQ +IG+G+++VR+ F++A+E +P IIF+DEID+ G+ R  S   +GD EVQRTMLELLNQL+G
Sbjct:  131 PGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKEQFEKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFLLAKEKSPCIIFIDEIDAIGTKRFDS-EVSGDREVQRTMLELLNQLDG 303          
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PRS6B_MANSE (26S protease regulatory subunit 6B OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 3.700e-45
Identity = 89/174 (51.15%), Postives = 123/174 (70.69%), Query Frame = 1
Query:   64 PSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            PS  VAL   S  L  +LP +    +++++ ++ PD  Y  IGG+D Q +EI+E +ELP+   EL+  +GI  P+GVL+YGPPG GKT+LA AVAHHT   FIRV GSE VQKY+GEG RMVR++F +A+E++P+IIF+DEID+  + R  +     D EVQR +LELLNQ++G
Sbjct:  123 PSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLANAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDA-QTGADREVQRILLELLNQMDG 295          
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PS6AA_ARATH (26S protease regulatory subunit 6A homolog A OS=Arabidopsis thaliana GN=RPT5A PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 4.832e-45
Identity = 92/174 (52.87%), Postives = 126/174 (72.41%), Query Frame = 1
Query:   64 PSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            P   V +  DSY++   LPS+    V  M+V++ P   Y+ IGGL++QI+E+ E I LP+   E FE LG+  PKGVLLYGPPGTGKTL+ARA A  T+ TF++++G +LVQ +IG+G+++VR+ F +A+E AP IIF+DEID+ G+ R  S   +GD EVQRTMLELLNQL+G
Sbjct:  132 PGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDS-EVSGDREVQRTMLELLNQLDG 304          
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PRS6A_BRACM (26S protease regulatory subunit 6A homolog OS=Brassica campestris GN=TBP1 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 4.832e-45
Identity = 92/174 (52.87%), Postives = 126/174 (72.41%), Query Frame = 1
Query:   64 PSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            P   V +  DSY++   LPS+    V  M+V++ P   Y+ IGGL++QI+E+ E I LP+   E FE LG+  PKGVLLYGPPGTGKTL+ARA A  T+ TF++++G +LVQ +IG+G+++VR+ F +A+E AP IIF+DEID+ G+ R  S   +GD EVQRTMLELLNQL+G
Sbjct:  132 PGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDS-EVSGDREVQRTMLELLNQLDG 304          
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PS10B_ARATH (26S protease regulatory subunit S10B homolog B OS=Arabidopsis thaliana GN=RPT4B PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 6.311e-45
Identity = 94/190 (49.47%), Postives = 124/190 (65.26%), Query Frame = 1
Query:   16 KYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            +YVV              TRV L   +  +   LP +V P+V  M  E   + +Y  +GGL  QI+E++E IELP+  PELF  +GI  PKGVLLYGPPGTGKTLLARA+A + D  F++V  S ++ KYIGE +R++RE+F  AREH P IIFMDEID+ G  R   G+ + D E+QRT++ELLNQL+G
Sbjct:   84 RYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYAREHQPCIIFMDEIDAIGGRRFSEGT-SADREIQRTLMELLNQLDG 272          
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PS10A_ARATH (26S protease regulatory subunit 10B homolog A OS=Arabidopsis thaliana GN=RPT4A PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 6.311e-45
Identity = 94/190 (49.47%), Postives = 124/190 (65.26%), Query Frame = 1
Query:   16 KYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            +YVV              TRV L   +  +   LP +V P+V  M  E   + +Y  +GGL  QI+E++E IELP+  PELF  +GI  PKGVLLYGPPGTGKTLLARA+A + D  F++V  S ++ KYIGE +R++RE+F  AREH P IIFMDEID+ G  R   G+ + D E+QRT++ELLNQL+G
Sbjct:   84 RYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYAREHQPCIIFMDEIDAIGGRRFSEGT-SADREIQRTLMELLNQLDG 272          
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PSMR_SULTO (Proteasome-activating nucleotidase OS=Sulfolobus tokodaii GN=pan PE=3 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 8.242e-45
Identity = 90/174 (51.72%), Postives = 128/174 (73.56%), Query Frame = 1
Query:   64 PSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            P + VAL      +  +LP +    V   +V + P+  Y  IGGL++QI EI+EVIELP+K PELF+ +GI  PKGVLLYGPPGTGKTLLA+AVA  ++ TFI+V  SE  QK++GEG+R+VRE+F +AR  APSI+F+DEID+ G+ R+  G+ +G+ E+QRT+++LL +++G
Sbjct:   95 PGSLVALTQRGSTIVEVLPEREDAYVKSFEVIEKPNVHYSDIGGLNEQINEIREVIELPLKNPELFKEIGIDPPKGVLLYGPPGTGKTLLAKAVATESNATFIQVVASEFAQKFVGEGARIVREVFELARRKAPSIVFIDEIDAIGAKRVDMGT-SGEREIQRTLMQLLAEIDG 267          
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PRS6B_ASPNG (26S protease regulatory subunit 6B homolog OS=Aspergillus niger GN=tbpA PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 8.242e-45
Identity = 94/189 (49.74%), Postives = 128/189 (67.72%), Query Frame = 1
Query:   19 YVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            YVV            PS+ VAL   S  L  ILP +    + ++   + PD TY  +GGLD Q +EI+E +ELP+   +L++ +GI  P+GVLLYGPPGTGKT+L +AVA+ T  +FIRV+GSE VQKY+GEG RMVR++F MARE++P+IIF+DEID+  + R  +     D EVQR +LELLNQ++G
Sbjct:  112 YVVRILSTLDREKLKPSSSVALHRHSNALVDILPPEADSSIAMLGENEKPDVTYADVGGLDMQKQEIREAVELPLTQFDLYKQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTTASFIRVNGSEFVQKYLGEGPRMVRDVFRMARENSPAIIFIDEIDAIATKRFDA-QTGADREVQRILLELLNQMDG 299          
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PRS10_DICDI (26S protease regulatory subunit S10B OS=Dictyostelium discoideum GN=psmC6 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.076e-44
Identity = 89/174 (51.15%), Postives = 121/174 (69.54%), Query Frame = 1
Query:   64 PSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            P  RV L   +  +  ILP +V P++  M  E     +Y  IGGL  QI+E++EV+ELP+  PELF  +GI  PKGVLLYGPPGTGKTLLARA+A + +  F++V  S +V KYIGE +R++RE+F  AR+H P +IFMDEID+ G  R   G+ + D E+QRT++ELLNQ++G
Sbjct:   98 PGARVTLDLTTLTILKILPREVDPIIFNMTAESPGSVSYGEIGGLSNQIRELREVVELPLMIPELFIRVGIKAPKGVLLYGPPGTGKTLLARAIASNLEANFLKVVSSAIVDKYIGESARVIREMFGYARDHQPCVIFMDEIDAIGGRRFSEGT-SADREIQRTLMELLNQMDG 270          
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PRS6A_DICDI (26S protease regulatory subunit 6A homolog OS=Dictyostelium discoideum GN=psmC3 PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.406e-44
Identity = 88/174 (50.57%), Postives = 125/174 (71.84%), Query Frame = 1
Query:   64 PSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            P   V +  DSY++   LP +    V  M++++ P   Y  IGGLD+QI+E+ E + LP+   E FES+GI  PKGVL+YGPPGTGKTLLARA A  T+ T+++++G +LVQ +IG+G+++VR+ F +A+E  P+IIF+DE+D+ G+ R  S   +GD EVQRTMLELLNQL+G
Sbjct:  129 PGDLVGINKDSYIILDTLPPEYDSRVKAMEIDEKPTEEYSDIGGLDKQIQELVEAVVLPMTHKERFESIGIKPPKGVLMYGPPGTGKTLLARACAAQTNSTYLKLAGPQLVQMFIGDGAKLVRDAFALAKEKGPTIIFIDELDAIGTKRFDS-EVSGDREVQRTMLELLNQLDG 301          
The following BLAST results are available for this feature:
BLAST of FC925425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
PS6AB_ARATH3.700e-4552.8726S protease regulatory subunit 6A homolog B OS=Ar... [more]
PRS6B_MANSE3.700e-4551.1526S protease regulatory subunit 6B OS=Manduca sext... [more]
PS6AA_ARATH4.832e-4552.8726S protease regulatory subunit 6A homolog A OS=Ar... [more]
PRS6A_BRACM4.832e-4552.8726S protease regulatory subunit 6A homolog OS=Bras... [more]
PS10B_ARATH6.311e-4549.4726S protease regulatory subunit S10B homolog B OS=... [more]
PS10A_ARATH6.311e-4549.4726S protease regulatory subunit 10B homolog A OS=A... [more]
PSMR_SULTO8.242e-4551.72Proteasome-activating nucleotidase OS=Sulfolobus t... [more]
PRS6B_ASPNG8.242e-4549.7426S protease regulatory subunit 6B homolog OS=Aspe... [more]
PRS10_DICDI1.076e-4451.1526S protease regulatory subunit S10B OS=Dictyostel... [more]
PRS6A_DICDI1.406e-4450.5726S protease regulatory subunit 6A homolog OS=Dict... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YE07FM1 TF Citrus clementina cDNA clone KN0AAP11YE07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925425 ID=FC925425; Name=FC925425; organism=Citrus clementina; type=EST; length=587bp
GTTCATCCTGATTTTAAATATGTTGTTGATATTGATAAAAGTATTGATAT
AACCAAGATCACTCCGTCAACAAGAGTTGCACTTCGTAATGACAGCTATG
TTCTTCATTTGATCCTGCCAAGCAAAGTATATCCCCTGGTCAACCTTATG
AAGGTTGAAAAGGTCCCTGATTCTACATATGACATGATTGGTGGCCTTGA
TCAGCAAATTAAGGAGATCAAGGAGGTCATTGAGCTTCCTATCAAACCTC
CCGAATTGTTCGAGTCTCTTGGAATAGCTCAACCCAAGGGTGTATTGCTA
TATGGACCACCTGGTACGGGCAAAACGCTGTTGGCTAGAGCTGTGGCTCA
TCATACTGATTGTACTTTCATCAGGGTTTCAGGTTCTGAATTAGTCCAGA
AATACATTGGAGAAGGCTCCAGAATGGTTAGAGAACTTTTTGTTATGGCA
AGGGAACATGCTCCGTCTATCATTTTTATGGATGAAATTGACAGTACCGG
ATCCGCCCGAATGCAATCTGGCAGCCGAAATGGTGACAGTGAGGTGCAGA
GGACTATGCTGGAGCTGCTCAACCAGCTTGAAGGATT
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