FC925435

Overview
NameFC925435
Unique NameFC925435
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length790
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925435 vs. ExPASy Swiss-Prot
Match: WRK36_ARATH (Probable WRKY transcription factor 36 OS=Arabidopsis thaliana GN=WRKY36 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.595e-19
Identity = 68/247 (27.53%), Postives = 104/247 (42.11%), Query Frame = 3
Query:  243 KQETGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLM--------------------------------------NKNTENEVG-ISKKRKAESEDHCHTIGFNVHAXXXXXXXXXXXCKRPKDNN-----------------------------TKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQR-SAEDPSILVATYEGEHNHPQPTDS 776
            ++E      ++ ++  EN+KL  +LS +  NYN+L+ Q   ++                                      +K  EN+V  IS K   ES+D    +GF               C++ K  N                             T  K +R  V+AS  + +  + DG QWRKYGQK  + NP PRAY++CS + +CPV+K+VQR   E+ S  + TYEG H+HP P ++
Sbjct:   23 EEELDATKAKVEKVREENEKLKLLLSTILNNYNSLQMQVSKVLGQQQGASSMELDHIDRQDENNDYDVDISLRLGRSEQKISKKEENKVDKISTKNVEESKDKRSALGFGFQIQSYEASKLDDLCRQVKLANAENKCVSSRKDVKSVRNENHQDVLEEHEQTGLKKTRVCVKASCEDPS--INDGCQWRKYGQKTAKTNPLPRAYYRCSMSSNCPVRKQVQRCGEEETSAFMTTYEGNHDHPLPMEA 267          
BLAST of FC925435 vs. ExPASy Swiss-Prot
Match: WRK48_ARATH (Probable WRKY transcription factor 48 OS=Arabidopsis thaliana GN=WRKY48 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.746e-18
Identity = 43/97 (44.33%), Postives = 67/97 (69.07%), Query Frame = 3
Query:  501 KRPKDNNTKAKVSRF-YVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPTDSKAEL 788
            K  K N  KA+ +RF ++  SD ++   + DGY+WRKYGQK  +++P PR+Y++C+    C VKK+V+RS++DPSI++ TYEG+H HP P   +  +
Sbjct:  195 KAKKKNQKKAREARFAFLTKSDIDN---LDDGYRWRKYGQKAVKNSPYPRSYYRCTTV-GCGVKKRVERSSDDPSIVMTTYEGQHTHPFPMTPRGHI 287          
BLAST of FC925435 vs. ExPASy Swiss-Prot
Match: WRK20_ARATH (Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.666e-18
Identity = 37/68 (54.41%), Postives = 52/68 (76.47%), Query Frame = 3
Query:  579 IVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPTDSKA 782
            I+ DGY+WRKYGQKV R NP+PR+Y+KC+ A  CPV+K V+R++ DP  ++ TYEG+H+H  PT   +
Sbjct:  379 ILDDGYRWRKYGQKVVRGNPNPRSYYKCT-AHGCPVRKHVERASHDPKAVITTYEGKHDHDVPTSKSS 445          

HSP 2 Score: 67.781 bits (164), Expect = 7.856e-11
Identity = 31/68 (45.59%), Postives = 44/68 (64.71%), Query Frame = 3
Query:  564 SNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQP 767
            S  +++  DGY WRKYGQK  + +  PR+Y+KC+  P+C VKK  +RS  D  I    Y+G H+HP+P
Sbjct:  204 STPSILADDGYNWRKYGQKHVKGSEFPRSYYKCTH-PNCEVKKLFERS-HDGQITDIIYKGTHDHPKP 269          
BLAST of FC925435 vs. ExPASy Swiss-Prot
Match: WRK24_ARATH (Probable WRKY transcription factor 24 OS=Arabidopsis thaliana GN=WRKY24 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.931e-17
Identity = 58/167 (34.73%), Postives = 86/167 (51.50%), Query Frame = 3
Query:  291 ENKKLNEMLSILCKNYNNLRQQYMD----LMNKNTENEVGISKKRKAESEDHCHTIGFNVHAXXXXXXXXXXXCKRPKDNNTKAKVSR------FYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHP 761
            + + +N MLS L    NN    ++D    +M  +T      S + +  S    +   F+VHA               K    K K SR      F+ R+ D     ++ DGY+WRKYGQK  + N  PR+Y++C++  +C VKK+VQR A+DP+++V TYEG HNHP
Sbjct:    2 DREDINPMLSRLDVENNNTFSSFVDKTLMMMPPST-----FSGEVEPSSSSSWYPESFHVHAPPLPPENDQIG---EKGKELKEKRSRKVPRIAFHTRSDDD----VLDDGYRWRKYGQKSVKHNAHPRSYYRCTYH-TCNVKKQVQRLAKDPNVVVTTYEGVHNHP 155          
BLAST of FC925435 vs. ExPASy Swiss-Prot
Match: WRK28_ARATH (Probable WRKY transcription factor 28 OS=Arabidopsis thaliana GN=WRKY28 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.521e-17
Identity = 34/64 (53.12%), Postives = 53/64 (82.81%), Query Frame = 3
Query:  582 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPTD 773
            ++DGY+WRKYGQK  +++P PR+Y++C+    C VKK+V+RS +DP++++ TYEG+HNHP PT+
Sbjct:  171 LEDGYRWRKYGQKAVKNSPYPRSYYRCT-TQKCNVKKRVERSFQDPTVVITTYEGQHNHPIPTN 233          
BLAST of FC925435 vs. ExPASy Swiss-Prot
Match: WRK71_ARATH (Probable WRKY transcription factor 71 OS=Arabidopsis thaliana GN=WRKY71 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.301e-17
Identity = 35/63 (55.56%), Postives = 52/63 (82.54%), Query Frame = 3
Query:  582 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPT 770
            ++DGY+WRKYGQK  +++P PR+Y++C+    C VKK+V+RS +DPSI++ TYEG+HNHP P+
Sbjct:  135 LEDGYRWRKYGQKAVKNSPYPRSYYRCT-TQKCNVKKRVERSFQDPSIVITTYEGKHNHPIPS 196          
BLAST of FC925435 vs. ExPASy Swiss-Prot
Match: WRKY1_ARATH (WRKY transcription factor 1 OS=Arabidopsis thaliana GN=WRKY1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.617e-17
Identity = 36/63 (57.14%), Postives = 49/63 (77.78%), Query Frame = 3
Query:  579 IVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQP 767
            IV DGY+WRKYGQK  + +P PR+Y++CS +P CPVKK V+RS+ D  +L+ TYEG+H+H  P
Sbjct:  305 IVNDGYRWRKYGQKSVKGSPYPRSYYRCS-SPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP 366          

HSP 2 Score: 68.1662 bits (165), Expect = 6.015e-11
Identity = 36/93 (38.71%), Postives = 56/93 (60.22%), Query Frame = 3
Query:  501 KRPKDNNTKAKVSRFYVRASDSNSTLI----VKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQP 767
            K PK + +   +S      S+ NS  I    ++DGY WRKYGQK+ + N   R+Y++C+  P+C  KK+++RSA    ++   Y GEH+HP+P
Sbjct:   81 KAPKVSESSGALS--LQSGSEGNSPFIREKVMEDGYNWRKYGQKLVKGNEFVRSYYRCTH-PNCKAKKQLERSA-GGQVVDTVYFGEHDHPKP 169          
BLAST of FC925435 vs. ExPASy Swiss-Prot
Match: WRKY8_ARATH (Probable WRKY transcription factor 8 OS=Arabidopsis thaliana GN=WRKY8 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.336e-17
Identity = 33/69 (47.83%), Postives = 54/69 (78.26%), Query Frame = 3
Query:  582 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPTDSKAEL 788
            ++DGY+WRKYGQK  +++P PR+Y++C+    C VKK+V+RS +DP++++ TYE +HNHP PT+ +  +
Sbjct:  182 LEDGYRWRKYGQKAVKNSPYPRSYYRCT-TQKCNVKKRVERSYQDPTVVITTYESQHNHPIPTNRRTAM 249          
BLAST of FC925435 vs. ExPASy Swiss-Prot
Match: WRKY3_ARATH (Probable WRKY transcription factor 3 OS=Arabidopsis thaliana GN=WRKY3 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.336e-17
Identity = 42/98 (42.86%), Postives = 59/98 (60.20%), Query Frame = 3
Query:  507 PKDNNTKAKVSRFYVRA-----------SDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQP 767
            PK  NT+ +VS     +             ++   ++ DGY+WRKYGQKV + NP PR+Y+KC+  P C V+K V+R+A DP  +V TYEG+HNH  P
Sbjct:  378 PKRRNTEVRVSEPVASSHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCT-TPDCGVRKHVERAATDPKAVVTTYEGKHNHDVP 474          

HSP 2 Score: 76.2554 bits (186), Expect = 2.209e-13
Identity = 36/80 (45.00%), Postives = 51/80 (63.75%), Query Frame = 3
Query:  528 AKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQP 767
            +++S F  R+   N+     DGY WRKYGQK  + +  PR+Y+KC+  P+CPVKKKV+RS  D  +    Y+G+HNH  P
Sbjct:  231 SEISVFEHRSQPQNADKPADDGYNWRKYGQKQVKGSDFPRSYYKCTH-PACPVKKKVERSL-DGQVTEIIYKGQHNHELP 308          
BLAST of FC925435 vs. ExPASy Swiss-Prot
Match: WRK56_ARATH (Probable WRKY transcription factor 56 OS=Arabidopsis thaliana GN=WRKY56 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.336e-17
Identity = 41/89 (46.07%), Postives = 60/89 (67.42%), Query Frame = 3
Query:  498 CKRPKDNNTKAKVS-RFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHP 761
            C + K   T A     F+ R+ D     ++ DGY+WRKYGQK  ++N  PR+Y++C++  +C VKK+VQR A+DP+++V TYEG HNHP
Sbjct:   88 CNKGKGKRTLAMQRIAFHTRSDDD----VLDDGYRWRKYGQKSVKNNAHPRSYYRCTYH-TCNVKKQVQRLAKDPNVVVTTYEGVHNHP 171          
The following BLAST results are available for this feature:
BLAST of FC925435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
WRK36_ARATH4.595e-1927.53Probable WRKY transcription factor 36 OS=Arabidops... [more]
WRK48_ARATH1.746e-1844.33Probable WRKY transcription factor 48 OS=Arabidops... [more]
WRK20_ARATH8.666e-1854.41Probable WRKY transcription factor 20 OS=Arabidops... [more]
WRK24_ARATH1.931e-1734.73Probable WRKY transcription factor 24 OS=Arabidops... [more]
WRK28_ARATH2.521e-1753.13Probable WRKY transcription factor 28 OS=Arabidops... [more]
WRK71_ARATH4.301e-1755.56Probable WRKY transcription factor 71 OS=Arabidops... [more]
WRKY1_ARATH5.617e-1757.14WRKY transcription factor 1 OS=Arabidopsis thalian... [more]
WRKY8_ARATH7.336e-1747.83Probable WRKY transcription factor 8 OS=Arabidopsi... [more]
WRKY3_ARATH7.336e-1742.86Probable WRKY transcription factor 3 OS=Arabidopsi... [more]
WRK56_ARATH7.336e-1746.07Probable WRKY transcription factor 56 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YI02FM1 TF Citrus clementina cDNA clone KN0AAP3YI02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925435 ID=FC925435; Name=FC925435; organism=Citrus clementina; type=EST; length=790bp
CTTAGATTCTCAATTTTTTAACAAGCTATAGGCCTATAGCTCTCTGGTCA
TTTGATCAGATTTGCTCGCATATATTTTCTTTTTCAAGTTCTTGTGTTAG
TTCTACAATTTGGTCAATGGATTCAACGTGGGTGGACACCTCTCTTGACC
TCAATCTCAATCTTCTGAATCACAGTAGTGAAGTTCCGAAGAGAGAGTTT
AAGGGAGATCACTTTGCTGAATTTGAAGAGAGAGCTTCAGTTAAACAAGA
GACTGGAATTTTGGTGGAGGAATTGAATAGGATAAGCACTGAGAACAAGA
AGCTGAATGAAATGCTTTCCATTTTGTGTAAGAATTACAACAATTTGCGG
CAGCAGTACATGGATTTGATGAACAAGAACACAGAAAATGAAGTTGGAAT
ATCAAAGAAGAGGAAGGCTGAGAGTGAAGATCATTGCCACACGATTGGCT
TCAATGTACACGCTACTGAGTCCAGCACTAGTACTGACGAAGAGTCATGC
AAAAGGCCAAAGGATAACAACACCAAGGCAAAAGTTTCTAGGTTTTATGT
GAGAGCCAGTGATTCAAATTCAACCCTGATTGTGAAGGATGGGTATCAAT
GGAGAAAGTATGGCCAAAAGGTTACAAGAGACAACCCATCACCTAGGGCT
TACTTCAAGTGTTCTTTCGCCCCAAGCTGTCCCGTAAAGAAGAAGGTGCA
AAGAAGTGCTGAGGATCCATCAATTTTAGTGGCAACTTATGAAGGAGAGC
ATAATCATCCTCAGCCTACGGATTCAAAAGCTGAATTATC
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