FC925445

Overview
NameFC925445
Unique NameFC925445
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC925445 vs. ExPASy Swiss-Prot
Match: SAR1B_BOVIN (GTP-binding protein SAR1b OS=Bos taurus GN=SAR1B PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.356e-45
Identity = 93/169 (55.03%), Postives = 110/169 (65.09%), Query Frame = 2 
Query:    2 LFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 508
            +FLGLDNAGKTTLLHMLKD+RL QH PT +PTSEEL+I  + F  FDLGGH  ARRVW                   ER  ESK+            NVP L+LGNKID P A SEE LR   GL   TTGKG V+L + N RPLEVFMCS++++ GYG+GF+W++QYI
Sbjct:   29 VFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGNVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197
[Close]
BLAST of FC925445 vs. ExPASy Swiss-Prot
Match: SAR1B_HUMAN (GTP-binding protein SAR1b OS=Homo sapiens GN=SAR1B PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.772e-45
Identity = 92/169 (54.44%), Postives = 110/169 (65.09%), Query Frame = 2 
Query:    2 LFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 508
            +FLGLDNAGKTTLLHMLKD+RL QH PT +PTSEEL+I  + F  FDLGGH  ARRVW                   ER  ESK+            NVP L+LGNKID P A SEE LR   GL   TTGKG ++L + N RPLEVFMCS++++ GYG+GF+W++QYI
Sbjct:   29 VFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSISLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197
[Close]
BLAST of FC925445 vs. ExPASy Swiss-Prot
Match: SAR1B_CRIGR (GTP-binding protein SAR1b OS=Cricetulus griseus GN=SAR1B PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.772e-45
Identity = 93/169 (55.03%), Postives = 110/169 (65.09%), Query Frame = 2 
Query:    2 LFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 508
            +FLGLDNAGKTTLLHMLKD+RL QH PT +PTSEEL+I  + F  FDLGGH  ARRVW                   ER  ESK+            NVP L+LGNKID P A SEE LR   GL   TTGKG V+L + N RPLEVFMCS++++ GYG+GF+W++QYI
Sbjct:   29 VFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197
[Close]
BLAST of FC925445 vs. ExPASy Swiss-Prot
Match: SAR1_CRYNE (Small COPII coat GTPase SAR1 OS=Cryptococcus neoformans GN=SAR1 PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.314e-45
Identity = 96/169 (56.80%), Postives = 113/169 (66.86%), Query Frame = 2 
Query:    2 LFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 508
            LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG +KF  +DLGGH  ARR+W                   ERFAESK              VPFL+LGNKID   A SEE+LR+ LGL   TTGKGK+ L D  +RP+EVFMCS+V + GYG+GF+WLSQYI
Sbjct:   24 LFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGNVKFTTYDLGGHIQARRLWRDYFPEVDGIVFLVDSADAERFAESKAELDSLLSIESLAQVPFLILGNKIDAYGAVSEEQLRHELGLYQ-TTGKGKIPLRD--IRPIEVFMCSVVMRQGYGEGFRWLSQYI 189
[Close]
BLAST of FC925445 vs. ExPASy Swiss-Prot
Match: SAR1_YARLI (Small COPII coat GTPase SAR1 OS=Yarrowia lipolytica GN=SAR1 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.148e-44
Identity = 96/169 (56.80%), Postives = 110/169 (65.09%), Query Frame = 2 
Query:    2 LFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 508
            LFLGLDNAGKTTLLHMLK++R+    PT +PTSEELSIG  KF  FDLGGH  ARRVW                    RFAESK              VPFL+LGNKID+P A SE EL+  LGL   TTGKGKV L + N+RP+E+FMCSIV + GYGDG +WLSQY+
Sbjct:   24 LFLGLDNAGKTTLLHMLKNDRMAVSNPTVHPTSEELSIGNCKFTTFDLGGHIQARRVWKDYFPEVNGIVFLVDAADPTRFAESKAELDSLLAIEQLKTVPFLILGNKIDMPQAVSELELKDALGLYQ-TTGKGKVPL-EGNIRPIEIFMCSIVMRQGYGDGIRWLSQYV 190
[Close]
BLAST of FC925445 vs. ExPASy Swiss-Prot
Match: SAR1_NEOFI (Small COPII coat GTPase sar1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=sar1 PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.959e-44
Identity = 94/169 (55.62%), Postives = 111/169 (65.68%), Query Frame = 2 
Query:    2 LFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 508
            LFLGLDNAGKTTLLHMLK++R+   QPT +PTSEEL+IG  +F  FDLGGHQ ARR+W                   ERF ESK              VPFL+LGNKID P A SE+ELR+ LGL   TTGKGKV L    +RP+EVFMCS+V + GYG+G +WLSQY+
Sbjct:   24 LFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 189
[Close]
BLAST of FC925445 vs. ExPASy Swiss-Prot
Match: SAR1_ASPFU (Small COPII coat GTPase sar1 OS=Aspergillus fumigatus GN=sar1 PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.959e-44
Identity = 94/169 (55.62%), Postives = 111/169 (65.68%), Query Frame = 2 
Query:    2 LFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 508
            LFLGLDNAGKTTLLHMLK++R+   QPT +PTSEEL+IG  +F  FDLGGHQ ARR+W                   ERF ESK              VPFL+LGNKID P A SE+ELR+ LGL   TTGKGKV L    +RP+EVFMCS+V + GYG+G +WLSQY+
Sbjct:   24 LFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 189
[Close]
BLAST of FC925445 vs. ExPASy Swiss-Prot
Match: SAR1_ASPCL (Small COPII coat GTPase sar1 OS=Aspergillus clavatus GN=sar1 PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.959e-44
Identity = 94/169 (55.62%), Postives = 111/169 (65.68%), Query Frame = 2 
Query:    2 LFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 508
            LFLGLDNAGKTTLLHMLK++R+   QPT +PTSEEL+IG  +F  FDLGGHQ ARR+W                   ERF ESK              VPFL+LGNKID P A SE+ELR+ LGL   TTGKGKV L    +RP+EVFMCS+V + GYG+G +WLSQY+
Sbjct:   24 LFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELSKVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 189
[Close]
BLAST of FC925445 vs. ExPASy Swiss-Prot
Match: SAR1A_PONAB (GTP-binding protein SAR1a OS=Pongo abelii GN=SAR1A PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.959e-44
Identity = 92/169 (54.44%), Postives = 108/169 (63.91%), Query Frame = 2 
Query:    2 LFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 508
            +FLGLDNAGKTTLLHMLKD+RL QH PT +PTSEEL+I  + F  FDLGGH+ ARRVW                    R  ESK             NVP L+LGNKID   A SEE+LR   GL   TTGKG V L + N RP+EVFMCS++++ GYG+GF+WLSQYI
Sbjct:   29 VFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYI 197
[Close]
BLAST of FC925445 vs. ExPASy Swiss-Prot
Match: SAR1A_HUMAN (GTP-binding protein SAR1a OS=Homo sapiens GN=SAR1A PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.959e-44
Identity = 92/169 (54.44%), Postives = 108/169 (63.91%), Query Frame = 2 
Query:    2 LFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 508
            +FLGLDNAGKTTLLHMLKD+RL QH PT +PTSEEL+I  + F  FDLGGH+ ARRVW                    R  ESK             NVP L+LGNKID   A SEE+LR   GL   TTGKG V L + N RP+EVFMCS++++ GYG+GF+WLSQYI
Sbjct:   29 VFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYI 197
The following BLAST results are available for this feature:
BLAST of FC925445 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
SAR1B_BOVIN1.356e-4555.03GTP-binding protein SAR1b OS=Bos taurus GN=SAR1B P... [more]
SAR1B_HUMAN1.772e-4554.44GTP-binding protein SAR1b OS=Homo sapiens GN=SAR1B... [more]
SAR1B_CRIGR1.772e-4555.03GTP-binding protein SAR1b OS=Cricetulus griseus GN... [more]
SAR1_CRYNE2.314e-4556.80Small COPII coat GTPase SAR1 OS=Cryptococcus neofo... [more]
SAR1_YARLI1.148e-4456.80Small COPII coat GTPase SAR1 OS=Yarrowia lipolytic... [more]
SAR1_NEOFI1.959e-4455.62Small COPII coat GTPase sar1 OS=Neosartorya fische... [more]
SAR1_ASPFU1.959e-4455.62Small COPII coat GTPase sar1 OS=Aspergillus fumiga... [more]
SAR1_ASPCL1.959e-4455.62Small COPII coat GTPase sar1 OS=Aspergillus clavat... [more]
SAR1A_PONAB1.959e-4454.44GTP-binding protein SAR1a OS=Pongo abelii GN=SAR1A... [more]
SAR1A_HUMAN1.959e-4454.44GTP-binding protein SAR1a OS=Homo sapiens GN=SAR1A... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YE16FM1 TF Citrus clementina cDNA clone KN0AAP11YE16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925445 ID=FC925445; Name=FC925445; organism=Citrus clementina; type=EST; length=694bp
CTTGTTTTTAGGCCTTGATAATGCTGGAAAAACAACGTTGCTTCACATGT
TGAAAGATGAGAGATTGGTTCAACATCAGCCAACACAGTATCCCACATCG
GAAGAGCTTAGTATTGGGAAAATTAAGTTCAAGGCGTTTGATTTGGGAGG
CCATCAGATTGCTAGGAGAGTCTGGAAGGATTACTATGCGAAGGTTGATG
CTGTGGTATACCTAGTGGATGCCTATGACAAAGAGAGGTTTGCAGAATCA
AAGAAAGAACTGGATGCACTCCTTTCTGATGAGGCATTGGCCAATGTTCC
TTTTCTTGTGTTAGGAAACAAGATTGACATCCCTTATGCTGCTTCTGAGG
AAGAGTTGCGTTACCACCTTGGCCTATCAAATTTCACCACTGGGAAGGGG
AAGGTTAATCTAGCGGACTCAAATGTCCGTCCACTGGAGGTGTTTATGTG
TAGCATAGTTCGCAAAATGGGATATGGTGATGGTTTCAAATGGCTCTCTC
AATACATTAAGTAGGGTAATGCTCAGGAAGTGTTATAGAAGTAATGCAGA
TTTCAAAATTTCACCCATGCCTACTACACCCTGTTTCACCAAAAAAATTG
TGTTTATCTACTTGTTTGATCTTTTAGTCTGTTAGTGGGACTTGAACCAG
AGGTACTGTGTTTTGAGTCCGGTTGGAAAGTGGTAGTTATGTTA
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