FC925445

Overview
NameFC925445
Unique NameFC925445
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925445 vs. ExPASy Swiss-Prot
Match: SAR1_CAEEL (GTP-binding protein SAR1 OS=Caenorhabditis elegans GN=ZK180.4 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.647e-41
Identity = 81/169 (47.93%), Postives = 108/169 (63.91%), Query Frame = 2
Query:    2 LFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 508
            +FLGLDNAGKTTLLHMLKD+R+ QH PT +PTSE++S+G I F  +DLGGH  ARRVW                   ER  ES+             +VP L+LGNKID P A SE++L++ L + +  TGKG V+  +   RP+EVFMCS++++ GYG+G +WL QY+
Sbjct:   25 VFLGLDNAGKTTLLHMLKDDRIAQHVPTLHPTSEQMSLGGISFTTYDLGGHAQARRVWKDYFPAVDAVVFLIDVADAERMQESRVELESLLQDEQIASVPVLILGNKIDKPGALSEDQLKWQLNIQHMCTGKGDVSRNEMASRPMEVFMCSVLQRQGYGEGIRWLGQYL 193          
BLAST of FC925445 vs. ExPASy Swiss-Prot
Match: SAR1_PICGU (Small COPII coat GTPase SAR1 OS=Pichia guilliermondii GN=SAR1 PE=3 SV=3)

HSP 1 Score: 166.392 bits (420), Expect = 1.314e-40
Identity = 91/169 (53.85%), Postives = 106/169 (62.72%), Query Frame = 2
Query:    2 LFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 508
            LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG ++F  FDLGGHQ ARR+W                   ER AESK              VPFL+LGNKID   A  E EL+  LGL N TTGK    L +   RP+EVFM S+V +MGYG+GFKWLS +I
Sbjct:   24 LFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADTERLAESKAELESLFRIEELSQVPFLILGNKIDKSTAIGEMELKSALGLYN-TTGKDVTKLPEGQ-RPIEVFMVSVVMRMGYGEGFKWLSSFI 190          
BLAST of FC925445 vs. ExPASy Swiss-Prot
Match: SAR1_KLULA (Small COPII coat GTPase SAR1 OS=Kluyveromyces lactis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.314e-40
Identity = 92/169 (54.44%), Postives = 105/169 (62.13%), Query Frame = 2
Query:    2 LFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 508
            LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG IKF  FDLGGH  ARR+W                   ERF E++             NVPF VLGNKID P A SE ELR  LGL N TTG  K+       RP+E+FMCS+V K GY + FKWLS+YI
Sbjct:   27 LFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHLQARRLWKDYFPEVNGIVFLVDAADPERFNEARIELDALFQIKELDNVPFAVLGNKIDSPSAVSETELRAALGLMN-TTGYTKI----EGQRPIELFMCSVVMKSGYSEAFKWLSEYI 190          
BLAST of FC925445 vs. ExPASy Swiss-Prot
Match: SAR1_ASHGO (Small COPII coat GTPase SAR1 OS=Ashbya gossypii GN=SAR1 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.478e-39
Identity = 89/169 (52.66%), Postives = 105/169 (62.13%), Query Frame = 2
Query:    2 LFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 508
            LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG IKF  FDLGGH  ARR+W                   ERF E++              VPF++LGNKID P A SE ELR  LGL N TTG  ++       RP+E+FMCS+V K GY + F+WLSQYI
Sbjct:   27 LFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGSIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADSERFNEARVELDALFQIPELKTVPFVILGNKIDAPSAVSETELRAALGLLN-TTGDARI----EGQRPVELFMCSVVMKSGYLEAFQWLSQYI 190          
BLAST of FC925445 vs. ExPASy Swiss-Prot
Match: SAR1_YEAST (Small COPII coat GTPase SAR1 OS=Saccharomyces cerevisiae GN=SAR1 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.236e-39
Identity = 89/169 (52.66%), Postives = 106/169 (62.72%), Query Frame = 2
Query:    2 LFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 508
            LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG IKF  FDLGGH  ARR+W                   ERF E++             +VPF++LGNKID P A SE ELR  LGL N TTG  ++       RP+EVFMCS+V + GY + F+WLSQYI
Sbjct:   27 LFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLN-TTGSQRI----EGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190          
BLAST of FC925445 vs. ExPASy Swiss-Prot
Match: SAR1_CANGA (Small COPII coat GTPase SAR1 OS=Candida glabrata GN=SAR1 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.673e-38
Identity = 87/169 (51.48%), Postives = 105/169 (62.13%), Query Frame = 2
Query:    2 LFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 508
            LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG IKF  FDLGGH  ARR+W                   +RF E++             +VPF++LGNKID   A SE ELR  LGL N TTG  ++       RP+EVFMCS+V + GY + F+WLSQYI
Sbjct:   26 LFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHVQARRLWKDYFPEVNGIVFLVDSADPDRFDEARVELDALFNITELKDVPFVILGNKIDAANAVSEAELRSALGLLN-TTGSQRI----EGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 189          
BLAST of FC925445 vs. ExPASy Swiss-Prot
Match: SAR1_GIALA (GTP-binding protein Sar1 OS=Giardia lamblia GN=SAR1 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.248e-35
Identity = 75/169 (44.38%), Postives = 99/169 (58.58%), Query Frame = 2
Query:    2 LFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 508
            +F+GLDNAGK+TLL MLK+       PTQ PTS+EL +G I+FK FDLGGH++AR++W                    RF ES++              P L+L NK+DI  A S E +    G+ +  TGKG  NL  S+ RPLEVF CS++ + GY DGFKWLS+Y+
Sbjct:   24 VFVGLDNAGKSTLLAMLKNSATTTVAPTQQPTSQELVMGSIRFKTFDLGGHEVARQLWEQYVTNSDGIVFLVDSADPSRFEESRRTLQELLDNHDLATTPILILSNKVDIQTAVSMETMVQSFGIQHLLTGKGGSNLR-SDQRPLEVFPCSVINRFGYTDGFKWLSKYL 191          
BLAST of FC925445 vs. ExPASy Swiss-Prot
Match: SAR1B_DICDI (GTP-binding protein Sar1B OS=Dictyostelium discoideum GN=sarB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.705e-14
Identity = 53/168 (31.55%), Postives = 71/168 (42.26%), Query Frame = 2
Query:    2 LFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVW-XXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQ 502
            + +GL NAGKTTLLH+L    L  H PT  P +E  + G + FKA+DLGG Q  R +W                        ESK               P L+LG+K D     + E L   L +  F  G     L +SN  P ++ M S + + G  D   WL +
Sbjct:   24 VIIGLGNAGKTTLLHLLVTGSLKSHIPTLRPNAESFTYGNVNFKAYDLGGQQNLRFLWKQYVPDSKTIIVFMVDSSDYNSIIESKSEIHDILGDEHLSQSPLLILGSKCDAKGHHNRENLIDLLDIRRFELG-----LNNSNNVPFDLIMTSSITRYGITDMLNWLDK 186          
BLAST of FC925445 vs. ExPASy Swiss-Prot
Match: SAR1_ENCCU (Small COPII coat GTPase SAR1 OS=Encephalitozoon cuniculi GN=SAR1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.811e-12
Identity = 54/185 (29.19%), Postives = 77/185 (41.62%), Query Frame = 2
Query:    2 LFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLAD-SNVRPLEVFMCSIVRKMG------YGDGFKWLSQYIK*GNAQEVL 535
            LFLG+DNAGKTTL++ LK +    + PT +P++  + IG +K +  DLGGH  AR  W                   ERF E ++              P +VL NKID+     E     +   S  +   G  N  D    + +++F  +I               FKWL   I   N +E L
Sbjct:   39 LFLGIDNAGKTTLVNKLKSDSTDVYMPTHHPSTSYIEIGNLKAQVIDLGGHTAARLAWRDYFYDCHGIVFIVDVHDVERFQEVRE--AYETVLSLEKRAPVVVLMNKIDLEGHTPETAEADYQWKSWLSQETGIENQEDPERGQVVKIFYVTITSGSANSITGPLARAFKWLEAMITYNNKKESL 221          
BLAST of FC925445 vs. ExPASy Swiss-Prot
Match: ARL3_CAEEL (ADP-ribosylation factor-like protein 3 OS=Caenorhabditis elegans GN=arl-3 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 48/171 (28.07%), Postives = 69/171 (40.35%), Query Frame = 2
Query:    2 LFLGLDNAGKTTLLHMLKDERLVQHQPTQ-YPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 511
            L LGLDNAGKTT+L  L  E +    PT+ +      ++G I+   +D+GG +  R  W                   +RF E                VP L+  NK D+  AAS EE+              K+NL     R   +  CS ++  G  DG  W++  +K
Sbjct:   21 LLLGLDNAGKTTILKQLSSEDVQHVTPTKGFNVKTVAAMGDIRLNVWDIGGQRSIRPYWSNYYENIDTLIFVIDSNDKKRFDEMNIELGELLDEEKLRKVPVLIFANKQDLVTAASSEEI------------TRKLNLDLLRDRTWHIQACSALKNEGINDGITWVASNLK 179          
The following BLAST results are available for this feature:
BLAST of FC925445 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
SAR1_CAEEL2.647e-4147.93GTP-binding protein SAR1 OS=Caenorhabditis elegans... [more]
SAR1_PICGU1.314e-4053.85Small COPII coat GTPase SAR1 OS=Pichia guilliermon... [more]
SAR1_KLULA1.314e-4054.44Small COPII coat GTPase SAR1 OS=Kluyveromyces lact... [more]
SAR1_ASHGO2.478e-3952.66Small COPII coat GTPase SAR1 OS=Ashbya gossypii GN... [more]
SAR1_YEAST3.236e-3952.66Small COPII coat GTPase SAR1 OS=Saccharomyces cere... [more]
SAR1_CANGA4.673e-3851.48Small COPII coat GTPase SAR1 OS=Candida glabrata G... [more]
SAR1_GIALA8.248e-3544.38GTP-binding protein Sar1 OS=Giardia lamblia GN=SAR... [more]
SAR1B_DICDI4.705e-1431.55GTP-binding protein Sar1B OS=Dictyostelium discoid... [more]
SAR1_ENCCU9.811e-1229.19Small COPII coat GTPase SAR1 OS=Encephalitozoon cu... [more]
ARL3_CAEEL4.869e-1128.07ADP-ribosylation factor-like protein 3 OS=Caenorha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP11YE16FM1 TF Citrus clementina cDNA clone KN0AAP11YE16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925445 ID=FC925445; Name=FC925445; organism=Citrus clementina; type=EST; length=694bp
CTTGTTTTTAGGCCTTGATAATGCTGGAAAAACAACGTTGCTTCACATGT
TGAAAGATGAGAGATTGGTTCAACATCAGCCAACACAGTATCCCACATCG
GAAGAGCTTAGTATTGGGAAAATTAAGTTCAAGGCGTTTGATTTGGGAGG
CCATCAGATTGCTAGGAGAGTCTGGAAGGATTACTATGCGAAGGTTGATG
CTGTGGTATACCTAGTGGATGCCTATGACAAAGAGAGGTTTGCAGAATCA
AAGAAAGAACTGGATGCACTCCTTTCTGATGAGGCATTGGCCAATGTTCC
TTTTCTTGTGTTAGGAAACAAGATTGACATCCCTTATGCTGCTTCTGAGG
AAGAGTTGCGTTACCACCTTGGCCTATCAAATTTCACCACTGGGAAGGGG
AAGGTTAATCTAGCGGACTCAAATGTCCGTCCACTGGAGGTGTTTATGTG
TAGCATAGTTCGCAAAATGGGATATGGTGATGGTTTCAAATGGCTCTCTC
AATACATTAAGTAGGGTAATGCTCAGGAAGTGTTATAGAAGTAATGCAGA
TTTCAAAATTTCACCCATGCCTACTACACCCTGTTTCACCAAAAAAATTG
TGTTTATCTACTTGTTTGATCTTTTAGTCTGTTAGTGGGACTTGAACCAG
AGGTACTGTGTTTTGAGTCCGGTTGGAAAGTGGTAGTTATGTTA
back to top