FC925452

Overview
NameFC925452
Unique NameFC925452
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length767
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925452 vs. ExPASy Swiss-Prot
Match: RER1_SCHPO (Protein rer1 OS=Schizosaccharomyces pombe GN=rer1 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.851e-33
Identity = 68/159 (42.77%), Postives = 95/159 (59.75%), Query Frame = 2
Query:  149 AWRLYQYYLDKTTPHAVYRWIGTLVIVAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEIEVA------DGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRPIAHMIKYRYIPFNI 607
            A RLY++++D+T P+  YRW+    ++A++ +R+  V+                      P  DP +E A      +  +LPT   DEF+PFIRRLPEFKFWYS  +A   A V +FF +FDVPVFWPIL+ Y++VL     RR I HM+KYRY+PF+I
Sbjct:   18 AVRLYRHWVDRTIPYTTYRWLTVSGLIALFFIRILLVRGWYIVCYTLAIYLLNLFLAFLTPKFDPSVEQAMKDEEIEEGVLPTSKDDEFRPFIRRLPEFKFWYSSMRATLFALVASFFRIFDVPVFWPILVVYYLVLSFFCFRRQIQHMLKYRYVPFDI 176          
BLAST of FC925452 vs. ExPASy Swiss-Prot
Match: RER1_YEAST (Protein RER1 OS=Saccharomyces cerevisiae GN=RER1 PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 6.583e-31
Identity = 67/152 (44.08%), Postives = 92/152 (60.53%), Query Frame = 2
Query:  158 LYQYYLDKTTPHAVYRWIGTLVIVAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEIEVAD--GPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRPIAHMIKYRYIPFNI 607
            LYQ+YLDK TPHA  RW     ++ ++ +R+   +                      P  D  ++  +    L   + S+EF+PFIRRLPEFKFWY+  +A  I+ +++ FS+FD+PVFWPILL Y+I+LF LTMRR I HMIKYRYIP +I
Sbjct:   27 LYQHYLDKVTPHAKERWAVLGGLLCLFMVRITMAEGWYVICYGLGLFLLNQFLAFLTPKFDMSLQQDEENNELEAGEKSEEFRPFIRRLPEFKFWYNSIRATVISLLLSLFSIFDIPVFWPILLMYFILLFFLTMRRQIQHMIKYRYIPLDI 178          
BLAST of FC925452 vs. ExPASy Swiss-Prot
Match: RER1_SACPS (Protein RER1 OS=Saccharomyces pastorianus GN=RER1 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.583e-31
Identity = 66/152 (43.42%), Postives = 92/152 (60.53%), Query Frame = 2
Query:  158 LYQYYLDKTTPHAVYRWIGTLVIVAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEIEVAD--GPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRPIAHMIKYRYIPFNI 607
            LYQ+YLDK TPHA  RW     ++ ++ +R+   +                      P  D  ++  +    L   + S+EF+PFIRRLPEFKFWY+  +A  I+ V++ FS+FD+PVFWPILL Y+++LF LTMRR I HM+KYRYIP +I
Sbjct:   27 LYQHYLDKVTPHAKQRWAVLGGLLCLFMVRITMAEGWYVICYGLGLFLLNQFLAFLTPKFDMSLQQDEENNELEAGEKSEEFRPFIRRLPEFKFWYNSIRATVISLVLSLFSIFDIPVFWPILLMYFVLLFFLTMRRQIQHMMKYRYIPLDI 178          
BLAST of FC925452 vs. ExPASy Swiss-Prot
Match: RER1_DICDI (Protein RER1 homolog OS=Dictyostelium discoideum GN=rer1 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.133e-25
Identity = 64/155 (41.29%), Postives = 82/155 (52.90%), Query Frame = 2
Query:  155 RLYQYYLDKTTPHAVYRWIGTLVIVAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXX-PLVDPEIEVADGPLLPT---KGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRPIAHMIKYRYIPFNI 607
            R YQ  ++KT      RW     +  +Y LRV                           P  DPE+E   G  LPT   +  DE KPFIRRLPEF FW+S+ KA  I+   TF    D+PVFWPILL Y+I++F +TM++ I HMIKY+YIPF +
Sbjct:   24 RKYQNLIEKTISFIPQRWAFVGFLSFLYILRVSLSSGGWYVITYALGIFLLTRFIAFLSPKWDPELEEDSGDSLPTTLNRNDDEAKPFIRRLPEFLFWHSIFKALFISIFCTFIPFLDLPVFWPILLLYFIIIFSVTMKKQIKHMIKYKYIPFTV 178          
The following BLAST results are available for this feature:
BLAST of FC925452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RER1_SCHPO1.851e-3342.77Protein rer1 OS=Schizosaccharomyces pombe GN=rer1 ... [more]
RER1_YEAST6.583e-3144.08Protein RER1 OS=Saccharomyces cerevisiae GN=RER1 P... [more]
RER1_SACPS6.583e-3143.42Protein RER1 OS=Saccharomyces pastorianus GN=RER1 ... [more]
RER1_DICDI4.133e-2541.29Protein RER1 homolog OS=Dictyostelium discoideum G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YJ20FM1 TF Citrus clementina cDNA clone KN0AAP8YJ20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925452 ID=FC925452; Name=FC925452; organism=Citrus clementina; type=EST; length=767bp
TCAATTCGCTTCCCTCAAATCAATTTGAGTCCTTTTACGTGAACATCGAA
AGACTCGTTTCAAGGACTTTTCATACTTCGATTGAATGGAAGGAATTGGA
GGCGACACTGCCTCGGCGGCATCCCCTGTATCACAATGGGGACATGATGC
TTGGAGGCTATATCAGTATTACCTGGACAAGACTACTCCACATGCAGTTT
ATAGGTGGATTGGAACCCTTGTAATTGTGGCAATCTACTGTTTGCGGGTT
TTTTATGTGCAAGGATTCTACATCATATCCTATGGTCTTGGGATCTATCT
CCTGAATTTGCTTATTGGGTTTTTGTCGCCTCTGGTTGATCCTGAAATCG
AAGTCGCTGATGGGCCTTTGTTGCCGACAAAGGGTTCTGATGAATTCAAG
CCTTTTATTCGCCGACTCCCAGAGTTTAAATTTTGGTACTCCATGACCAA
GGCTTTCTGCATAGCTTTTGTAATGACATTCTTTTCTGTGTTTGATGTTC
CTGTGTTTTGGCCTATATTACTTTGTTACTGGATTGTTCTGTTTGTTCTT
ACAATGAGACGCCCAATCGCACACATGATCAAATACAGATATATCCCGTT
CAACATTGGAAAACAGAAGTATGGTGGTAAGAAACCTTCATCAAGTGGGG
GTGGCTCCCGTGGGGACTGAAGCAGAACTTAATTCACGAGCCAGTAGAAA
AAGGACGGGATGGGGATAAAAAAAAAGGTTATGGGAAGATATTAAAATTG
AATTTTTTCCTTTCAGG
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