FC925461

Overview
NameFC925461
Unique NameFC925461
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length457
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_CLAPU (Glyceraldehyde-3-phosphate dehydrogenase OS=Claviceps purpurea GN=GPD-1 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.233e-11
Identity = 29/50 (58.00%), Postives = 40/50 (80.00%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAK 151
            +D   ++ SSI DA+AGI+L+K FVKL++WYDNEWGY  RV+DL+  +AK
Sbjct:  283 SDMNGNTNSSIFDAKAGISLNKNFVKLIAWYDNEWGYSRRVLDLLAYVAK 332          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_CANFA (Glyceraldehyde-3-phosphate dehydrogenase OS=Canis familiaris GN=GAPDH PE=2 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 7.233e-11
Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = 2
Query:    5 DFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAKTQ 157
            DF  D+ SS  DA AGIAL+  FVKL+SWYDNE+GY  RVVDL+V MA  +
Sbjct:  283 DFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVYMASKE 333          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_SCHMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.447e-11
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAK 151
            +DF   + SSI DA+AGI+L+  FVKLVSWYDNE+GY  RVVDLI  M K
Sbjct:  285 SDFVGSTSSSIFDAKAGISLNNNFVKLVSWYDNEFGYSCRVVDLITHMHK 334          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_CRYNE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus neoformans GN=GPD PE=3 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 9.447e-11
Identity = 32/45 (71.11%), Postives = 35/45 (77.78%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLI 136
            TDF   + SSI DAQAGIAL+  FVKLVSWYDNE+GY  RV DLI
Sbjct:  284 TDFIGSTESSIFDAQAGIALNANFVKLVSWYDNEYGYSRRVCDLI 328          
The following BLAST results are available for this feature:
BLAST of FC925461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
G3P_CLAPU7.233e-1158.00Glyceraldehyde-3-phosphate dehydrogenase OS=Clavic... [more]
G3P_CANFA7.233e-1162.75Glyceraldehyde-3-phosphate dehydrogenase OS=Canis ... [more]
G3P_SCHMA9.447e-1164.00Glyceraldehyde-3-phosphate dehydrogenase OS=Schist... [more]
G3P_CRYNE9.447e-1171.11Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP11YE23FM1 TF Citrus clementina cDNA clone KN0AAP11YE23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925461 ID=FC925461; Name=FC925461; organism=Citrus clementina; type=EST; length=457bp
CACCGACTTTGCTCTTGACAGTAGGTCCAGTATCCTTGATGCCCAGGCTG
GTATTGCTTTGAGTAAGAAATTTGTGAAGCTTGTCTCCTGGTATGACAAT
GAGTGGGGCTACCGTACTCGTGTGGTGGATTTGATTGTCCCCATGGCGAA
GACCCAGTAACTTACCTCGCGTGGCTTGAGTATGTAACACGCTTAGTTGT
GCTAAGTGTGGTGTTTCTTTGCGCTAAATGTGGTGTTTCTTTGCCCTAAA
TGTGGTGTTTGTGTTTCTATGTAGAGGGTCTGAGTTTAAATAAAATTGTT
TCCAAGACATTATCCAGAGCCTTACCTGCTCATGCAGGGTTGTGCTTAGA
TTTTCCCTTGTAGTATGCAAGAAGAGTTGGTGAACCCACTTATGTTTTGT
TAGCGAGAAAACAATTGTCTATTGGAAACTTGCTTTTATAAAAAAAAAAA
AAAAAAA
back to top