FC925461

Overview
NameFC925461
Unique NameFC925461
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length457
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_ATRNU (Glyceraldehyde-3-phosphate dehydrogenase OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.138e-14
Identity = 37/51 (72.55%), Postives = 42/51 (82.35%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAKT 154
            TDF  D+RSSI DA+AGI L+  FVKLVSWYDNEWGY +RVVDLI  M+KT
Sbjct:  286 TDFVGDNRSSIFDAKAGICLNGNFVKLVSWYDNEWGYSSRVVDLIRHMSKT 336          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3PC_PETHY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petunia hybrida GN=GAPC PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.990e-14
Identity = 38/52 (73.08%), Postives = 42/52 (80.77%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAKTQ 157
            TDF  D+RSSI DA+AGIALSK FVKLVSWYDNE GY TRVVDLI  +A  +
Sbjct:  286 TDFIGDNRSSIFDAKAGIALSKNFVKLVSWYDNEMGYSTRVVDLIKHIASVE 337          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3PC_PETCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petroselinum crispum GN=GAPC PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.192e-13
Identity = 36/49 (73.47%), Postives = 40/49 (81.63%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMA 148
            TDF  DSRSSI DA+AGIAL+  FVK+VSWYDNEWGY  RV+DLI  MA
Sbjct:  285 TDFVGDSRSSIFDAKAGIALNGNFVKVVSWYDNEWGYSNRVIDLIRHMA 333          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3PC_MAGLI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Magnolia liliiflora GN=GAPC PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.192e-13
Identity = 38/54 (70.37%), Postives = 44/54 (81.48%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVD--LIVPMAKTQ 157
            TDF  D+RSSI DA+AGIAL++ FVKLVSWYDNEWGY +RV+D  LIV MA  Q
Sbjct:  288 TDFIGDNRSSIFDAKAGIALNEHFVKLVSWYDNEWGYSSRVIDLILIVHMASCQ 341          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P2_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Candida glabrata GN=GPD2 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.557e-13
Identity = 37/50 (74.00%), Postives = 41/50 (82.00%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAK 151
            +DF  DSRSSI DA AGI LS KFVKLVSWYDNE+GY TRVVDL+  +AK
Sbjct:  282 SDFLGDSRSSIFDASAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVAK 331          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_PHANO (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeosphaeria nodorum GN=GPD1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.034e-13
Identity = 35/50 (70.00%), Postives = 42/50 (84.00%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAK 151
            TD   D+RSSI DA+AGI+L+K FVKLVSWYDNEWGY  RV+DL+V +AK
Sbjct:  283 TDLNGDTRSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLVYIAK 332          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_CURLU (Glyceraldehyde-3-phosphate dehydrogenase OS=Curvularia lunata GN=GPD PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.034e-13
Identity = 35/50 (70.00%), Postives = 42/50 (84.00%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAK 151
            TD   D+RSSI DA+AGI+L+K FVKLVSWYDNEWGY  RV+DL+V +AK
Sbjct:  283 TDLNGDNRSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLVYIAK 332          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_COCHE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cochliobolus heterostrophus GN=GPD1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.034e-13
Identity = 35/50 (70.00%), Postives = 42/50 (84.00%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAK 151
            TD   D+RSSI DA+AGI+L+K FVKLVSWYDNEWGY  RV+DL+V +AK
Sbjct:  283 TDLNGDNRSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLVYIAK 332          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_RHIMI (Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizomucor miehei GN=GPD PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.656e-13
Identity = 35/50 (70.00%), Postives = 42/50 (84.00%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAK 151
            TDF  DS SSI DA+AGI+L+  FVKL+SWYDNE+GY TRVVDL+V +AK
Sbjct:  282 TDFIGDSHSSIFDAKAGISLNPNFVKLISWYDNEYGYSTRVVDLLVHIAK 331          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_PHYIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Phytophthora infestans GN=GPDA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.656e-13
Identity = 35/52 (67.31%), Postives = 41/52 (78.85%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAKTQ 157
            +DF  DS SSI DA+AGIAL+  FVKLVSWYDNEWGY +RV+DLI  M K +
Sbjct:  281 SDFIGDSHSSIFDAEAGIALTDDFVKLVSWYDNEWGYSSRVLDLIEHMVKNE 332          
The following BLAST results are available for this feature:
BLAST of FC925461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
G3P_ATRNU3.138e-1472.55Glyceraldehyde-3-phosphate dehydrogenase OS=Atripl... [more]
G3PC_PETHY6.990e-1473.08Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PETCR1.192e-1373.47Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MAGLI1.192e-1370.37Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_CANGA1.557e-1374.00Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Cand... [more]
G3P_PHANO2.034e-1370.00Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeos... [more]
G3P_CURLU2.034e-1370.00Glyceraldehyde-3-phosphate dehydrogenase OS=Curvul... [more]
G3P_COCHE2.034e-1370.00Glyceraldehyde-3-phosphate dehydrogenase OS=Cochli... [more]
G3P_RHIMI2.656e-1370.00Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizom... [more]
G3P_PHYIN2.656e-1367.31Glyceraldehyde-3-phosphate dehydrogenase OS=Phytop... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YE23FM1 TF Citrus clementina cDNA clone KN0AAP11YE23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925461 ID=FC925461; Name=FC925461; organism=Citrus clementina; type=EST; length=457bp
CACCGACTTTGCTCTTGACAGTAGGTCCAGTATCCTTGATGCCCAGGCTG
GTATTGCTTTGAGTAAGAAATTTGTGAAGCTTGTCTCCTGGTATGACAAT
GAGTGGGGCTACCGTACTCGTGTGGTGGATTTGATTGTCCCCATGGCGAA
GACCCAGTAACTTACCTCGCGTGGCTTGAGTATGTAACACGCTTAGTTGT
GCTAAGTGTGGTGTTTCTTTGCGCTAAATGTGGTGTTTCTTTGCCCTAAA
TGTGGTGTTTGTGTTTCTATGTAGAGGGTCTGAGTTTAAATAAAATTGTT
TCCAAGACATTATCCAGAGCCTTACCTGCTCATGCAGGGTTGTGCTTAGA
TTTTCCCTTGTAGTATGCAAGAAGAGTTGGTGAACCCACTTATGTTTTGT
TAGCGAGAAAACAATTGTCTATTGGAAACTTGCTTTTATAAAAAAAAAAA
AAAAAAA
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