FC925461

Overview
NameFC925461
Unique NameFC925461
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length457
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P3_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Saccharomyces cerevisiae GN=TDH3 PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 5.917e-13
Identity = 36/50 (72.00%), Postives = 40/50 (80.00%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAK 151
            +DF  DS SSI DA AGI LS KFVKLVSWYDNE+GY TRVVDL+  +AK
Sbjct:  282 SDFLGDSHSSIFDASAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVAK 331          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_TRISI (Glyceraldehyde-3-phosphate dehydrogenase OS=Trionyx sinensis GN=GAPDH PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 7.728e-13
Identity = 36/52 (69.23%), Postives = 41/52 (78.85%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAKTQ 157
            +DF  DSRSSI DA AGIAL+  FVKLVSWYDNE+GY  RVVDL+V MA  +
Sbjct:  282 SDFNGDSRSSIFDAAAGIALNDNFVKLVSWYDNEFGYSNRVVDLLVHMASKE 333          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_EMENI (Glyceraldehyde-3-phosphate dehydrogenase OS=Emericella nidulans GN=gpdA PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 7.728e-13
Identity = 34/50 (68.00%), Postives = 40/50 (80.00%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAK 151
            TD   D+RSSI DA+AGIAL+  F+KLVSWYDNEWGY  RVVDLI  ++K
Sbjct:  283 TDLNGDTRSSIFDAKAGIALNSNFIKLVSWYDNEWGYSRRVVDLITYISK 332          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P2_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Saccharomyces cerevisiae GN=TDH2 PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 7.728e-13
Identity = 36/50 (72.00%), Postives = 40/50 (80.00%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAK 151
            +DF  DS SSI DA AGI LS KFVKLVSWYDNE+GY TRVVDL+  +AK
Sbjct:  282 SDFLGDSNSSIFDAAAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVAK 331          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_PICAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia angusta GN=GPD PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.009e-12
Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAK 151
            +DF  DSRSS+ DA+AGI L+  FVKLVSWYDNE+GY TRVVDL+  +AK
Sbjct:  283 SDFLTDSRSSVFDAKAGILLTPTFVKLVSWYDNEYGYSTRVVDLLQHVAK 332          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_YARLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrowia lipolytica GN=GPD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.318e-12
Identity = 34/50 (68.00%), Postives = 40/50 (80.00%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAK 151
            TDF  D+ SSI DA+AGI L+  FVKL+SWYDNE+GY  RVVDLIV +AK
Sbjct:  284 TDFIGDTHSSIFDAKAGIGLNDNFVKLISWYDNEYGYSARVVDLIVAVAK 333          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_PARBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=GPD PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.318e-12
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAK 151
            TD   D RSSI DA AGIAL+ +FVKL+SWYDNEWGY  RV+DLI  +AK
Sbjct:  284 TDLNGDPRSSIFDASAGIALNDRFVKLISWYDNEWGYSRRVLDLIAYIAK 333          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_LENED (Glyceraldehyde-3-phosphate dehydrogenase OS=Lentinula edodes GN=gpd PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.318e-12
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAK 151
            TDF  D+ SSI DA AGI L+K FVKL++WYDNEWGY  RVVDL+V  AK
Sbjct:  283 TDFIGDNHSSIFDATAGIQLNKNFVKLIAWYDNEWGYSGRVVDLLVFAAK 332          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_AJECA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ajellomyces capsulata GN=GPD PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.318e-12
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAK 151
            +D   DSRSSI DA AGIAL+  F+KL+SWYDNEWGY  RVVDLI  +AK
Sbjct:  283 SDLNGDSRSSIFDASAGIALNDHFIKLISWYDNEWGYSRRVVDLIAYIAK 332          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_OMPOL (Glyceraldehyde-3-phosphate dehydrogenase OS=Omphalotus olearius GN=GPD PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.722e-12
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAK 151
            TDF  ++ SSI DA AGIAL+K FVKL++WYDNEWGY  RVVDLI  +A+
Sbjct:  283 TDFTGNTHSSIFDASAGIALNKNFVKLIAWYDNEWGYSRRVVDLITFVAQ 332          
The following BLAST results are available for this feature:
BLAST of FC925461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
G3P3_YEAST5.917e-1372.00Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Sacc... [more]
G3P_TRISI7.728e-1369.23Glyceraldehyde-3-phosphate dehydrogenase OS=Triony... [more]
G3P_EMENI7.728e-1368.00Glyceraldehyde-3-phosphate dehydrogenase OS=Emeric... [more]
G3P2_YEAST7.728e-1372.00Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Sacc... [more]
G3P_PICAN1.009e-1268.00Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_YARLI1.318e-1268.00Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrow... [more]
G3P_PARBA1.318e-1268.00Glyceraldehyde-3-phosphate dehydrogenase OS=Paraco... [more]
G3P_LENED1.318e-1268.00Glyceraldehyde-3-phosphate dehydrogenase OS=Lentin... [more]
G3P_AJECA1.318e-1268.00Glyceraldehyde-3-phosphate dehydrogenase OS=Ajello... [more]
G3P_OMPOL1.722e-1266.00Glyceraldehyde-3-phosphate dehydrogenase OS=Omphal... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YE23FM1 TF Citrus clementina cDNA clone KN0AAP11YE23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925461 ID=FC925461; Name=FC925461; organism=Citrus clementina; type=EST; length=457bp
CACCGACTTTGCTCTTGACAGTAGGTCCAGTATCCTTGATGCCCAGGCTG
GTATTGCTTTGAGTAAGAAATTTGTGAAGCTTGTCTCCTGGTATGACAAT
GAGTGGGGCTACCGTACTCGTGTGGTGGATTTGATTGTCCCCATGGCGAA
GACCCAGTAACTTACCTCGCGTGGCTTGAGTATGTAACACGCTTAGTTGT
GCTAAGTGTGGTGTTTCTTTGCGCTAAATGTGGTGTTTCTTTGCCCTAAA
TGTGGTGTTTGTGTTTCTATGTAGAGGGTCTGAGTTTAAATAAAATTGTT
TCCAAGACATTATCCAGAGCCTTACCTGCTCATGCAGGGTTGTGCTTAGA
TTTTCCCTTGTAGTATGCAAGAAGAGTTGGTGAACCCACTTATGTTTTGT
TAGCGAGAAAACAATTGTCTATTGGAAACTTGCTTTTATAAAAAAAAAAA
AAAAAAA
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