FC925461

Overview
NameFC925461
Unique NameFC925461
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length457
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_XENLA (Glyceraldehyde-3-phosphate dehydrogenase OS=Xenopus laevis GN=gapdh PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 6.542e-12
Identity = 34/52 (65.38%), Postives = 39/52 (75.00%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAKTQ 157
            TDF  D+ SSI DA AGIAL++ FVKLVSWYDNE GY  RVVDL+  MA  +
Sbjct:  282 TDFNGDTHSSIFDADAGIALNENFVKLVSWYDNECGYSNRVVDLVCHMASKE 333          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_PICPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia pastoris GN=GPD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.542e-12
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAK 151
            +DF  D RSSI DA AGI L+  FVKL+SWYDNE+GY TRVVDL+  +AK
Sbjct:  283 SDFLGDERSSIFDASAGIQLTPSFVKLISWYDNEYGYSTRVVDLLQHVAK 332          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_PICCI (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia ciferrii GN=GPD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.542e-12
Identity = 31/45 (68.89%), Postives = 39/45 (86.67%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLI 136
            +DF  D+RSSI DA+AGI LS +FVKL++WYDNE+GY TRVVDL+
Sbjct:  283 SDFLTDNRSSIFDAEAGIWLSPRFVKLIAWYDNEYGYSTRVVDLL 327          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_MASBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Mastigamoeba balamuthi GN=GAPD PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.542e-12
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIV 139
            +DF  +  SSI DA+AGIAL K FVKLVSWYDNEWGY  RVVDL++
Sbjct:  288 SDFVGEPMSSIFDAKAGIALDKTFVKLVSWYDNEWGYSNRVVDLLL 333          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_HOMAM (Glyceraldehyde-3-phosphate dehydrogenase OS=Homarus americanus PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 8.545e-12
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAK 151
            +DF  D+RSSI DA+AGI LSK FVK+VSWYDNE+GY  RV+DL+  M K
Sbjct:  280 SDFIGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYSQRVIDLLKHMQK 329          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_ASPNG (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus niger GN=gpdA PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 8.545e-12
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAK 151
            +D   D  SSI DA+AGIAL+  FVKLVSWYDNEWGY  RVVDLI  ++K
Sbjct:  283 SDLNGDDHSSIFDAKAGIALNSNFVKLVSWYDNEWGYSRRVVDLIAYISK 332          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P3_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Rhizomucor racemosus GN=GPD3 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.545e-12
Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMA 148
            TDF  D+ SSI DA+AGI LS  FVKL+SWYDNE+GY TRVVDL+  +A
Sbjct:  285 TDFVGDAHSSIFDAKAGIQLSPTFVKLISWYDNEFGYSTRVVDLLAYVA 333          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P3_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluyveromyces marxianus GN=GAP3 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.545e-12
Identity = 34/50 (68.00%), Postives = 40/50 (80.00%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAK 151
            +DF  D+ SSI DA AGI LS +FVKLVSWYDNE+GY TRVVDL+  +AK
Sbjct:  281 SDFLGDTHSSIFDAAAGIQLSPQFVKLVSWYDNEFGYSTRVVDLVELVAK 330          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P2_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces marxianus GN=GAP2 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 8.545e-12
Identity = 34/50 (68.00%), Postives = 40/50 (80.00%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAK 151
            +DF  D+ SSI DA AGI LS +FVKLVSWYDNE+GY TRVVDL+  +AK
Sbjct:  281 SDFLGDTHSSIFDAAAGIQLSPQFVKLVSWYDNEFGYSTRVVDLVELVAK 330          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_SCLSC (Glyceraldehyde-3-phosphate dehydrogenase OS=Sclerotinia sclerotiorum GN=GPD PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.116e-11
Identity = 32/50 (64.00%), Postives = 40/50 (80.00%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAK 151
            TD   D+ SSI DA+AGI+L+K FVKLVSWYDNEWGY  RV+DL+  ++K
Sbjct:  284 TDMNGDNHSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLHYISK 333          
The following BLAST results are available for this feature:
BLAST of FC925461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
G3P_XENLA6.542e-1265.38Glyceraldehyde-3-phosphate dehydrogenase OS=Xenopu... [more]
G3P_PICPA6.542e-1266.00Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_PICCI6.542e-1268.89Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_MASBA6.542e-1269.57Glyceraldehyde-3-phosphate dehydrogenase OS=Mastig... [more]
G3P_HOMAM8.545e-1266.00Glyceraldehyde-3-phosphate dehydrogenase OS=Homaru... [more]
G3P_ASPNG8.545e-1266.00Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3P3_RHIRA8.545e-1267.35Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Rhiz... [more]
G3P3_KLUMA8.545e-1268.00Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluy... [more]
G3P2_KLUMA8.545e-1268.00Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3P_SCLSC1.116e-1164.00Glyceraldehyde-3-phosphate dehydrogenase OS=Sclero... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YE23FM1 TF Citrus clementina cDNA clone KN0AAP11YE23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925461 ID=FC925461; Name=FC925461; organism=Citrus clementina; type=EST; length=457bp
CACCGACTTTGCTCTTGACAGTAGGTCCAGTATCCTTGATGCCCAGGCTG
GTATTGCTTTGAGTAAGAAATTTGTGAAGCTTGTCTCCTGGTATGACAAT
GAGTGGGGCTACCGTACTCGTGTGGTGGATTTGATTGTCCCCATGGCGAA
GACCCAGTAACTTACCTCGCGTGGCTTGAGTATGTAACACGCTTAGTTGT
GCTAAGTGTGGTGTTTCTTTGCGCTAAATGTGGTGTTTCTTTGCCCTAAA
TGTGGTGTTTGTGTTTCTATGTAGAGGGTCTGAGTTTAAATAAAATTGTT
TCCAAGACATTATCCAGAGCCTTACCTGCTCATGCAGGGTTGTGCTTAGA
TTTTCCCTTGTAGTATGCAAGAAGAGTTGGTGAACCCACTTATGTTTTGT
TAGCGAGAAAACAATTGTCTATTGGAAACTTGCTTTTATAAAAAAAAAAA
AAAAAAA
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