FC925461

Overview
NameFC925461
Unique NameFC925461
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length457
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3PT_RAT (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Rattus norvegicus GN=Gapdhs PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.904e-11
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLI 136
            TDF  DS SSI DA+AGIAL+  FVKLVSWYDNE+GY  RVVDL+
Sbjct:  380 TDFNGDSHSSIFDAKAGIALNDNFVKLVSWYDNEYGYSHRVVDLL 424          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3PA_GUITH (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Guillardia theta GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.904e-11
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAK 151
            TDF  +  SS  DA+AGI+L+ +FVKLV+WYDNEWGY  RV DL+V +AK
Sbjct:  330 TDFETEPISSTFDAEAGISLNPRFVKLVAWYDNEWGYSNRVKDLMVHVAK 379          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_PHARH (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaffia rhodozyma GN=GPD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.486e-11
Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLI 136
            TDF  DS SS  DAQ GI+L+  FVKLVSWYDNEWGY  RV DL+
Sbjct:  284 TDFTGDSASSTFDAQGGISLNGNFVKLVSWYDNEWGYSARVCDLV 328          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_GLOMM (Glyceraldehyde-3-phosphate dehydrogenase OS=Glossina morsitans morsitans GN=Gapdh PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.486e-11
Identity = 30/45 (66.67%), Postives = 37/45 (82.22%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLI 136
            TDF  D+ SS+ DA+AGI L+ KFVKL+SWYDNE+GY  RV+DLI
Sbjct:  281 TDFVGDTHSSVFDAKAGIPLNDKFVKLISWYDNEFGYSNRVIDLI 325          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_COTJA (Glyceraldehyde-3-phosphate dehydrogenase OS=Coturnix coturnix japonica GN=GAPDH PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 2.486e-11
Identity = 34/51 (66.67%), Postives = 38/51 (74.51%), Query Frame = 2
Query:    5 DFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAKTQ 157
            DF  DS SS  DA AGIAL+  FVKLVSWYDNE+GY  RVVDL+V MA  +
Sbjct:  283 DFNGDSHSSTFDAGAGIALNDNFVKLVSWYDNEFGYSNRVVDLMVHMASKE 333          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_COLLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Columba livia GN=GAPDH PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 2.486e-11
Identity = 34/51 (66.67%), Postives = 38/51 (74.51%), Query Frame = 2
Query:    5 DFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAKTQ 157
            DF  DS SS  DA AGIAL+  FVKLVSWYDNE+GY  RVVDL+V MA  +
Sbjct:  283 DFNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEYGYSNRVVDLMVHMASKE 333          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3PC_GRAVE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Gracilaria verrucosa GN=GAPC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.486e-11
Identity = 31/52 (59.62%), Postives = 37/52 (71.15%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAKTQ 157
            TDF  +  S + DA AGI L+ +F KLV+WYDNEWGY  RVVDLI  +AK Q
Sbjct:  284 TDFIHEEASCVFDAGAGIMLNSRFCKLVAWYDNEWGYSNRVVDLIAHVAKLQ 335          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P1_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Trichoderma koningii GN=gpd1 PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 2.486e-11
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAK 151
            TD   D  SS  DA+AGIAL+K FVK++SWYDNE+GY  RVVDLIV ++K
Sbjct:  282 TDILTDPHSSTFDAKAGIALNKNFVKVMSWYDNEYGYSRRVVDLIVYVSK 331          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P1_JACOR (Glyceraldehyde-3-phosphate dehydrogenase, muscle OS=Jaculus orientalis PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 2.486e-11
Identity = 34/52 (65.38%), Postives = 39/52 (75.00%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAKTQ 157
            +DF  DS SS  DA AGIAL+  FVKLVSWYDNE+GY  RVVDL+V MA  +
Sbjct:  312 SDFNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEFGYSNRVVDLMVHMASKE 363          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_COLLN (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum lindemuthianum GN=GPDA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.247e-11
Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAK 151
            TD   +  SSI DA+AGI+L+  FVKLVSWYDNEWGY  RV+DL+  +AK
Sbjct:  283 TDMIGNPNSSIFDAKAGISLNNNFVKLVSWYDNEWGYSRRVLDLLAHVAK 332          
The following BLAST results are available for this feature:
BLAST of FC925461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
G3PT_RAT1.904e-1173.33Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3PA_GUITH1.904e-1162.00Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3P_PHARH2.486e-1168.89Glyceraldehyde-3-phosphate dehydrogenase OS=Phaffi... [more]
G3P_GLOMM2.486e-1166.67Glyceraldehyde-3-phosphate dehydrogenase OS=Glossi... [more]
G3P_COTJA2.486e-1166.67Glyceraldehyde-3-phosphate dehydrogenase OS=Coturn... [more]
G3P_COLLI2.486e-1166.67Glyceraldehyde-3-phosphate dehydrogenase OS=Columb... [more]
G3PC_GRAVE2.486e-1159.62Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P1_TRIKO2.486e-1164.00Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Tric... [more]
G3P1_JACOR2.486e-1165.38Glyceraldehyde-3-phosphate dehydrogenase, muscle O... [more]
G3P_COLLN3.247e-1162.00Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YE23FM1 TF Citrus clementina cDNA clone KN0AAP11YE23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925461 ID=FC925461; Name=FC925461; organism=Citrus clementina; type=EST; length=457bp
CACCGACTTTGCTCTTGACAGTAGGTCCAGTATCCTTGATGCCCAGGCTG
GTATTGCTTTGAGTAAGAAATTTGTGAAGCTTGTCTCCTGGTATGACAAT
GAGTGGGGCTACCGTACTCGTGTGGTGGATTTGATTGTCCCCATGGCGAA
GACCCAGTAACTTACCTCGCGTGGCTTGAGTATGTAACACGCTTAGTTGT
GCTAAGTGTGGTGTTTCTTTGCGCTAAATGTGGTGTTTCTTTGCCCTAAA
TGTGGTGTTTGTGTTTCTATGTAGAGGGTCTGAGTTTAAATAAAATTGTT
TCCAAGACATTATCCAGAGCCTTACCTGCTCATGCAGGGTTGTGCTTAGA
TTTTCCCTTGTAGTATGCAAGAAGAGTTGGTGAACCCACTTATGTTTTGT
TAGCGAGAAAACAATTGTCTATTGGAAACTTGCTTTTATAAAAAAAAAAA
AAAAAAA
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